View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3628_low_26 (Length: 304)
Name: NF3628_low_26
Description: NF3628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3628_low_26 |
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| [»] chr7 (11 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 11 - 304
Target Start/End: Complemental strand, 39355263 - 39354970
Alignment:
| Q |
11 |
cacagaccactccaaaccaatcatcgcatacactataatgccatagaccacagcttgtacaaaaacatatgggagctctattaaaacctgcaatgcaaga |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39355263 |
cacagaccactccaaaccaatcatcgcatacactataatgccatagaccacagcttgtacaaaaacatatgggagctctatcaaaacctgcaatgcaaga |
39355164 |
T |
|
| Q |
111 |
taattaactgttttttgttatgttcttacgatattaaagtcattaatcttggtaccagaagatatattttataaattggtatggatacttgcctgcccaa |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39355163 |
taattaactgttttttgttatgttcttacgatattaaagtcattaatcttggtaccagaagatatattttataaattggtaaggatacttgcctgcccaa |
39355064 |
T |
|
| Q |
211 |
acgcatatggaaaagtagaatacattccggctgctctttctctataaaagaccgttctttcaacaataaccaccggctgcactgaattacaatt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39355063 |
acgcatatggaaaagtagaatacattccggctgctctttctctataaaagaccgttctttcaacaacaaccaccggctgcactgaattacaatt |
39354970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 14 - 300
Target Start/End: Complemental strand, 39340439 - 39340154
Alignment:
| Q |
14 |
agaccactccaaaccaatcatcgcatacactataatgccatagaccacagcttgtacaaaaacatatgggagctc-tattaaaacctgcaatgcaagata |
112 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| || |
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| T |
39340439 |
agaccactcaaaaccaatcatcgcatacactataatgccatagaccacagcttgtacaaaaacatatgggagcttatattacaacctgcaatgcaagcta |
39340340 |
T |
|
| Q |
113 |
attaactgttttttgttatgttcttacgatattaaagtcattaatcttggtaccagaagatatattttataaattggtatggatacttgcctgcccaaac |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39340339 |
attaactgttttttgttatgttcttacgatattaaagtcatcaaacttggtaccagaagatat--tttataaattggtatggatacttgcctgcccaaaa |
39340242 |
T |
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| Q |
213 |
gcatatggaaaagtagaatacattccggctgctctttctctataaaagaccgttctttcaacaataaccaccggctgcactgaattac |
300 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39340241 |
gcatatggaaaagctgaatacattccggccgctctttctctataaaagaccgttctttcaacagcaaccaccggctgcactgaattac |
39340154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 11 - 299
Target Start/End: Original strand, 39562556 - 39562845
Alignment:
| Q |
11 |
cacagaccactccaaaccaatcatcgcatacactataatgccatagaccacagcttgtacaaaaacatatgggagctctattaaaacctgcaatgcaaga |
110 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
39562556 |
cacagaccattcaaaaccaatcatagcatacactataatgccatagactacagcttgtacaaaaacatatgggagctcaattacaacctgcaatgcaaga |
39562655 |
T |
|
| Q |
111 |
taattaactgttttttgttatgttct-tacgatattaaagtcattaatcttggtaccagaagatatattttataaattggtatggatacttgcctgccca |
209 |
Q |
| |
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||||| |||||||||||||||||||| || |||| ||||| ||| || |||||||| || |||||||||||||| | | |||||||||||| || |
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| T |
39562656 |
taatttactgttttttgttatgttctataagataataaagacatctatgatggtaccaaaatcaatattttataaatttttttagatacttgcctgagca |
39562755 |
T |
|
| Q |
210 |
aacgcatatggaaaagtagaatacattccggctgctctttctctataaaagaccgttctttcaacaataaccaccggctgcactgaatta |
299 |
Q |
| |
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|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||| |
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| T |
39562756 |
aaagcatatggaaaagctgaatacattccggctgctctttctctataaaagaccgttctttcgacagcaaccactggctgcactgaatta |
39562845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 175 - 300
Target Start/End: Complemental strand, 39367693 - 39367568
Alignment:
| Q |
175 |
tattttataaattggtatggatacttgcctgcccaaacgcatatggaaaagtagaatacattccggctgctctttctctataaaagaccgttctttcaac |
274 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| | || ||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
39367693 |
tattttataaattggtttggattcttgcctgagctaaagcatatggaaaagctgagtacattcgggctgctctttctctataaaagaccgttctttcgac |
39367594 |
T |
|
| Q |
275 |
aataaccaccggctgcactgaattac |
300 |
Q |
| |
|
| |||||| |||||||||||||||| |
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|
| T |
39367593 |
accaaccactggctgcactgaattac |
39367568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 39367955 - 39367864
Alignment:
| Q |
17 |
ccactccaaaccaatcatcgcatacactataatgccatagaccacagcttgtacaaaaacatatgggagctctattaaaacctgcaatgcaa |
108 |
Q |
| |
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|||||| ||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
39367955 |
ccactcaaaaccaatcataacatacactacaatgccatagaccacagcttgcacaaaaacatatgggagctctattacaacctgcaatgcaa |
39367864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 198 - 294
Target Start/End: Original strand, 1083245 - 1083341
Alignment:
| Q |
198 |
cttgcctgcccaaacgcatatggaaaagtagaatacattccggctgctctttctctataaaagaccgttctttcaacaataaccaccggctgcactg |
294 |
Q |
| |
|
|||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||| |
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| T |
1083245 |
cttgcctgaccaaaagcatatggaaaatctgaatacattccggctgctctttctctataaaagacggttctttcaacagcaaccatcggctgcactg |
1083341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 39545596 - 39545695
Alignment:
| Q |
11 |
cacagaccactccaaaccaatcatcgcatacactataatgccatagaccacagcttgtacaaaaacatatgggagctctattaaaacctgcaatgcaaga |
110 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||| ||| ||||| |||| |||||||||||||||| |
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|
| T |
39545596 |
cacagaccactcaaaaccaatcatagcataaactataaatccatagaccacagattgtacaaaaacatgtggaagctcaattacaacctgcaatgcaaga |
39545695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 195 - 292
Target Start/End: Original strand, 39545935 - 39546032
Alignment:
| Q |
195 |
atacttgcctgcccaaacgcatatggaaaagtagaatacattccggctgctctttctctataaaagaccgttctttcaacaataaccaccggctgcac |
292 |
Q |
| |
|
||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||| |
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|
| T |
39545935 |
atacttgcctgagcaaaagcatatggaaaagctgaatacattccggctgctctttctcgataaaagaccgttctttcaacagctaccactggctgcac |
39546032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 39536304 - 39536395
Alignment:
| Q |
17 |
ccactccaaaccaatcatcgcatacactataatgccatagaccacagcttgtacaaaaacatatgggagctctattaaaacctgcaatgcaa |
108 |
Q |
| |
|
|||||| ||||||||||| ||||| ||||||| ||||||||||||| ||||||||||||| ||| ||||| |||| |||||||||||||| |
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| T |
39536304 |
ccactcaaaaccaatcatagcataaactataaatccatagaccacagactgtacaaaaacatgtggaagctcaattacaacctgcaatgcaa |
39536395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 198 - 300
Target Start/End: Original strand, 39536621 - 39536723
Alignment:
| Q |
198 |
cttgcctgcccaaacgcatatggaaaagtagaatacattccggctgctctttctctataaaagaccgttctttcaacaataaccaccggctgcactgaat |
297 |
Q |
| |
|
|||||||| |||| ||||| || |||| ||||||||||| || |||||||||||||||||||| |||||||||||| |||||| |||||||||| || |
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|
| T |
39536621 |
cttgcctgagcaaaagcatacggcaaagctgaatacattccagccgctctttctctataaaagactgttctttcaacagaaaccactggctgcactgcat |
39536720 |
T |
|
| Q |
298 |
tac |
300 |
Q |
| |
|
||| |
|
|
| T |
39536721 |
tac |
39536723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 1082910 - 1083003
Alignment:
| Q |
17 |
ccactccaaaccaatcatcgcatacactataatgccatagaccacagcttgtacaaaaacatatgggagctctattaaaacctgcaatgcaaga |
110 |
Q |
| |
|
|||||| ||||||||||| ||||| ||||||| ||||||| ||||| |||||||||||||| ||| ||||| |||| |||||| ||||||||| |
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|
| T |
1082910 |
ccactcaaaaccaatcatagcataaactataaatccatagatcacagattgtacaaaaacatgtggaagctcaattacaacctgaaatgcaaga |
1083003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 2879094 - 2879046
Alignment:
| Q |
227 |
agaatacattccggctgctctttctctataaaagaccgttctttcaaca |
275 |
Q |
| |
|
|||||||||||| || ||||||||||||||||| || |||||||||||| |
|
|
| T |
2879094 |
agaatacattccagcagctctttctctataaaaaacagttctttcaaca |
2879046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 2895811 - 2895859
Alignment:
| Q |
227 |
agaatacattccggctgctctttctctataaaagaccgttctttcaaca |
275 |
Q |
| |
|
|||||||||||| || |||||||||||||| ||||| | |||||||||| |
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| T |
2895811 |
agaatacattccagcagctctttctctatagaagacagatctttcaaca |
2895859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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