View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3628_low_31 (Length: 272)
Name: NF3628_low_31
Description: NF3628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3628_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 5 - 253
Target Start/End: Complemental strand, 9424082 - 9423834
Alignment:
| Q |
5 |
gaggagcaattgttgggttgaatattagggtcaacaactcgtattgtgtaattgttgtaattgattgattgcacaaaatattcagcatcaaacagcttca |
104 |
Q |
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| T |
9424082 |
gaggagcaattgttgggttgaatattagggtcaacaactcgtattgtgtaattattgtaattgattgattgcacaaaatattcagcatcaaacagcttca |
9423983 |
T |
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| Q |
105 |
atactgtaacgttgtttagacaattcaactcgtacaaattgttgccacagtggtctgggtcgtgttttagtcggaatggatgagttatgttagaaatttt |
204 |
Q |
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| T |
9423982 |
atactgtaacgttgtttacgcaattcaactcgtacaaattgttgccacagtggtctgggtcgtgttttagtcggaatggatgatttatgttggaaatttt |
9423883 |
T |
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| Q |
205 |
tccacaggaagaagaacaaggttgtgaataagttttgtgtggaagtaga |
253 |
Q |
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| T |
9423882 |
tccacaggaagaagaacaaggttgtgaataagttttgtgtggaagtaga |
9423834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 5 - 253
Target Start/End: Complemental strand, 9444315 - 9444067
Alignment:
| Q |
5 |
gaggagcaattgttgggttgaatattagggtcaacaactcgtattgtgtaattgttgtaattgattgattgcacaaaatattcagcatcaaacagcttca |
104 |
Q |
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| T |
9444315 |
gaggagcagttggtaggttgaatgtttgggtcaacaactcgtattgtgtaattgttgtaattgattgattgcaccaaatattcagcatcatacagcttca |
9444216 |
T |
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| Q |
105 |
atactgtaacgttgtttagacaattcaactcgtacaaattgttgccacagtggtctgggtcgtgttttagtcggaatggatgagttatgttagaaatttt |
204 |
Q |
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| T |
9444215 |
atactgtaacgttgtttagacaattcaactcgtacaaattgttgccacagtggtctgggtcgtgttttagtcggaatggataagttatgttggaaatttt |
9444116 |
T |
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| Q |
205 |
tccacaggaagaagaacaaggttgtgaataagttttgtgtggaagtaga |
253 |
Q |
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| T |
9444115 |
tccacaggaagaagaacaaggttgtgaataagttttgtgtggaagtaga |
9444067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 5 - 172
Target Start/End: Original strand, 9417938 - 9418105
Alignment:
| Q |
5 |
gaggagcaattgttgggttgaatattagggtcaacaactcgtattgtgtaattgttgtaattgattgattgcacaaaatattcagcatcaaacagcttca |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
9417938 |
gaggagcaattgttgggttgaatattagggtcaacaactcgtattgtgtaattcttgtaattgattgattgcacaaaatattcagcatcatacagcttca |
9418037 |
T |
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| Q |
105 |
atactgtaacgttgtttagacaattcaactcgtacaaattgttgccacagtggtctgggtcgtgtttt |
172 |
Q |
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| T |
9418038 |
atactgtaacgttgtttagacaattcaactcgtacaaattgttgccacagtggtctgggtcgtgtttt |
9418105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 9418102 - 9418154
Alignment:
| Q |
201 |
tttttccacaggaagaagaacaaggttgtgaataagttttgtgtggaagtaga |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9418102 |
tttttccacaggaagaagaacaaggttgtgaataagttttgtgtggaagtaga |
9418154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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