View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3628_low_32 (Length: 271)

Name: NF3628_low_32
Description: NF3628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3628_low_32
NF3628_low_32
[»] chr1 (3 HSPs)
chr1 (13-271)||(9424139-9424397)
chr1 (13-214)||(9444408-9444606)
chr1 (17-197)||(9417627-9417804)


Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 271
Target Start/End: Complemental strand, 9424397 - 9424139
Alignment:
Q  13 cagaaggatgtgagagtaacaagcttaacacgacattgaggctccaatattccaagttgtgggtccccaacaatagcatatatgttgtgttgacccatgc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9424397 cagaaggatgtgagagtaacaagcttaacacgacattgaggctccaatattccaagttgtgggtccccaacaatagcatatatgttgtgttgacccatgc 9424298  T
Q  113 aagaagatgtatccgtataatacatattcacgttgttactaggtggacttgtacagttcatgtaaattacaggcctagataaatcaattccatcgaaata 212  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  9424297 aagaagatgtatccgtataatacatattcacattgttactaggtggacttgtacagttcatgtaaattacaggcctagataaatcaattccatcgaaaac 9424198  T
Q  213 ataagaggtggaagataaatcaattccatcgtaagaacttgatcgaagtaagctgtatt 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9424197 ataagaggtggaagataaatcaattccatcgtaagaacttgatcgaagtaagctgtatt 9424139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 13 - 214
Target Start/End: Complemental strand, 9444606 - 9444408
Alignment:
Q  13 cagaaggatgtgagagtaacaagcttaacacgacattgaggctccaatattccaagttgtgggtccccaacaatagcatatatgttgtgttgacccatgc 112  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||| |||||    |||||| | ||| ||    
T  9444606 cagaaggatgtgagagtaacaagcttaacacggcattgaggctgcaatattccaagttgtgggtccccgacaataacatat---gtgtgttcatccaggc 9444510  T
Q  113 aagaagatgtatccgtataatacatattcacgttgttactaggtggacttgtacagttcatgtaaattacaggcctagataaatcaattccatcgaaata 212  Q
    | |||| |||||||||||||||  ||| |||   ||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||| |||| ||||    
T  9444509 atgaagttgtatccgtataatatttatccacaacgttactaggtggacttgtacacttcaggtaaattacaggcctggataaatcaattctatcggaata 9444410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 9417627 - 9417804
Alignment:
Q  17 aggatgtgagagtaacaagcttaacacgacattgaggctccaatattccaagttgtgggtccccaacaatagcatatatgttgtgttgacccatgcaaga 116  Q
    ||||||||||||||||||||| |||||| |||||||||| |||||||||||  ||||| |||||||||||| |||||  ||| |||||| ||| ||| ||    
T  9417627 aggatgtgagagtaacaagctcaacacggcattgaggctgcaatattccaaagtgtggatccccaacaataacatat--gtt-tgttgatccaggcatga 9417723  T
Q  117 agatgtatccgtataatacatattcacgttgttactaggtggacttgtacagttcatgtaaattacaggcctagataaatc 197  Q
    || |||||||| ||||||||||||||| |  |||||||||||||||||||| |||| |||||||||||||| |||||||||    
T  9417724 agctgtatccgcataatacatattcacatcattactaggtggacttgtacacttcaggtaaattacaggccaagataaatc 9417804  T

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