View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3628_low_34 (Length: 271)
Name: NF3628_low_34
Description: NF3628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3628_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 45218054 - 45217797
Alignment:
| Q |
1 |
caagaactcaatctcataaactgtttcgatacagaaccgtccatgtcgatgaactcatcatcggaatcaaatcatggtaatgaattagagccaagggttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45218054 |
caagaactcaatctcataaactgtttcgatacagaaccgtccatgtcgatgaattcatcatcggaatcaaatcatggtaatgaattagagccaaggattt |
45217955 |
T |
|
| Q |
101 |
tctcatgcaactattgccaaagaaagttttatagttcacaggcacttggtggacaccaaaatgcacacaaaagagaaagaactatggcaaaaagaggaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45217954 |
tctcatgcaactattgccaaagaaagttttatagttcacaggcacttggtggacaccaaaatgcacacaaaagagaaagaactatggcaaaaagaggaaa |
45217855 |
T |
|
| Q |
201 |
caaatctgcggtttcgctagattttgaacacaggtactcaagtatggcttctctacct |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45217854 |
caaatctgcggtttcgctagattttgaacacaggtactcaagtatggcttctctacct |
45217797 |
T |
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Back To:
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Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 97 - 197
Target Start/End: Complemental strand, 687173 - 687073
Alignment:
| Q |
97 |
gttttctcatgcaactattgccaaagaaagttttatagttcacaggcacttggtggacaccaaaatgcacacaaaagagaaagaactatggcaaaaagag |
196 |
Q |
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| T |
687173 |
gttttttcatgcaactactgccaaagaaagttttatagttctcaagcacttggaggacaccaaaatgcacacaagcgcgaaagaactttggcgagaagag |
687074 |
T |
|
| Q |
197 |
g |
197 |
Q |
| |
|
| |
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|
| T |
687073 |
g |
687073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 97 - 197
Target Start/End: Complemental strand, 704540 - 704440
Alignment:
| Q |
97 |
gttttctcatgcaactattgccaaagaaagttttatagttcacaggcacttggtggacaccaaaatgcacacaaaagagaaagaactatggcaaaaagag |
196 |
Q |
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| T |
704540 |
gttttttcatgcaactactgccaaagaaagttttatagttctcaagcacttggaggacaccaaaatgcacacaagcgcgaaagaactttggcgagaagag |
704441 |
T |
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| Q |
197 |
g |
197 |
Q |
| |
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| |
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| T |
704440 |
g |
704440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 170
Target Start/End: Original strand, 53465301 - 53465371
Alignment:
| Q |
100 |
ttctcatgcaactattgccaaagaaagttttatagttcacaggcacttggtggacaccaaaatgcacacaa |
170 |
Q |
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| T |
53465301 |
ttctcatgcaactattgtcaaagaaagttttatagctctcaagctttgggaggacaccaaaatgctcacaa |
53465371 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 196
Target Start/End: Complemental strand, 33032649 - 33032544
Alignment:
| Q |
91 |
ccaagggttttctcatgcaactattgccaaagaaagttttatagttcacaggcacttggtggacaccaaaatgcacacaaaagagaaagaactatggcaa |
190 |
Q |
| |
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||||| |||||||||||||| || || || |||||||||| ||||| || || ||||||||||||||||||||||| |||||||||||||| | |||| |
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| T |
33032649 |
ccaagagttttctcatgcaattactgtcagagaaagtttttcagttctcaagctcttggtggacaccaaaatgcacataaaagagaaagaacattagcaa |
33032550 |
T |
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| Q |
191 |
aaagag |
196 |
Q |
| |
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|||||| |
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|
| T |
33032549 |
aaagag |
33032544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 198
Target Start/End: Complemental strand, 2867206 - 2867117
Alignment:
| Q |
109 |
aactattgccaaagaaagttttatagttcacaggcacttggtggacaccaaaatgcacacaaaagagaaagaactatggcaaaaagagga |
198 |
Q |
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| T |
2867206 |
aactattgtcatagaaaattctatagctcacaagcattaggtggacaccaaaatgctcacaaaagagagagatcaatagcaaaaagagga |
2867117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 182
Target Start/End: Complemental strand, 29335361 - 29335318
Alignment:
| Q |
139 |
caggcacttggtggacaccaaaatgcacacaaaagagaaagaac |
182 |
Q |
| |
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|||||||||||||| || |||||||||||||| ||||||||||| |
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| T |
29335361 |
caggcacttggtggtcatcaaaatgcacacaagagagaaagaac |
29335318 |
T |
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