View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3628_low_36 (Length: 253)

Name: NF3628_low_36
Description: NF3628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3628_low_36
NF3628_low_36
[»] chr1 (3 HSPs)
chr1 (11-193)||(37582330-37582512)
chr1 (23-93)||(2987806-2987876)
chr1 (22-86)||(4652122-4652186)
[»] chr8 (4 HSPs)
chr8 (22-105)||(5214989-5215072)
chr8 (22-118)||(30235798-30235895)
chr8 (22-85)||(35062795-35062858)
chr8 (31-85)||(10552604-10552658)
[»] chr5 (5 HSPs)
chr5 (28-118)||(24436130-24436220)
chr5 (22-93)||(31721998-31722069)
chr5 (48-118)||(31742466-31742536)
chr5 (48-92)||(24071970-24072014)
chr5 (33-78)||(30097675-30097721)
[»] chr3 (4 HSPs)
chr3 (25-118)||(1652561-1652654)
chr3 (22-118)||(7966748-7966843)
chr3 (23-90)||(30935060-30935127)
chr3 (41-93)||(22948427-22948480)
[»] chr7 (3 HSPs)
chr7 (22-86)||(38485900-38485964)
chr7 (22-118)||(9350015-9350111)
chr7 (48-80)||(16828809-16828841)
[»] chr2 (6 HSPs)
chr2 (22-118)||(18681381-18681477)
chr2 (22-115)||(6173899-6173993)
chr2 (49-105)||(29043993-29044049)
chr2 (22-118)||(31902094-31902190)
chr2 (59-118)||(915159-915217)
chr2 (49-78)||(24165886-24165915)
[»] chr6 (5 HSPs)
chr6 (24-105)||(27774910-27774991)
chr6 (48-118)||(6946878-6946949)
chr6 (27-118)||(12794419-12794511)
chr6 (48-92)||(17278171-17278215)
chr6 (48-104)||(9224249-9224305)
[»] chr4 (2 HSPs)
chr4 (48-105)||(43077282-43077339)
chr4 (49-118)||(43373801-43373870)


Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 11 - 193
Target Start/End: Complemental strand, 37582512 - 37582330
Alignment:
Q  11 cagagacatgcgttacagaaagtacaaactaagacgacgtatataggcggaacacccgaaaacaaacatcaacaaagacacccttacgatcaacaaccat 110  Q
    ||||||||| ||||| |||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37582512 cagagacatacgttatagaaagtacaaactaagacgacgtatattgacggaacacccgaaaataaacatcaacaaagacacccttacgatcaacaaccat 37582413  T
Q  111 aaggacaagtgcatgcaagtgcttatgaattattcaccacgtcaaatgcaacctttattgtgaaatttggatttgtgattagt 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37582412 aaggacaagtgcatgcaagtgcttatgaattattcaccacgtcaaatgcaacctttattgtgaaatttggatttgtgattagt 37582330  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 2987806 - 2987876
Alignment:
Q  23 ttacagaaagtacaaactaagacgacgtatataggcggaacacccgaaaacaaacatcaacaaagacaccc 93  Q
    |||| |||||||||||||||| || ||||||||||||||||| ||||||||||||| ||||||| ||||||    
T  2987806 ttaccgaaagtacaaactaaggcgccgtatataggcggaacatccgaaaacaaacaccaacaaaaacaccc 2987876  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 4652186 - 4652122
Alignment:
Q  22 gttacagaaagtacaaactaagacgacgtatataggcggaacacccgaaaacaaacatcaacaaa 86  Q
    |||| |||||||||||||||||||  ||||||||||||||||||| ||||||||||| |||||||    
T  4652186 gttatagaaagtacaaactaagacaccgtatataggcggaacacctgaaaacaaacaccaacaaa 4652122  T

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Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 5214989 - 5215072
Alignment:
Q  22 gttacagaaagtacaaactaagacgacgtatataggcggaacacccgaaaacaaacatcaacaaagacacccttacgatcaaca 105  Q
    |||||||||||||||||||||| || |||||||||||| |||||||||||||||||   ||||||||||||| |||||||||||    
T  5214989 gttacagaaagtacaaactaaggcgccgtatataggcgaaacacccgaaaacaaactctaacaaagacacccctacgatcaaca 5215072  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 30235798 - 30235895
Alignment:
Q  22 gttacagaaagtacaaactaa-gacgacgtatataggcggaacacccgaaaacaaacatcaacaaagacacccttacgatcaacaaccataaggacaa 118  Q
    ||||||||| ||||||||||| | |  ||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||| ||| ||||||||    
T  30235798 gttacagaaggtacaaactaaaggctccgtatataggcggaacatccgaaaacaaacaccaacaaagacacccttgcgatcaacacccaaaaggacaa 30235895  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 35062858 - 35062795
Alignment:
Q  22 gttacagaaagtacaaactaagacgacgtatataggcggaacacccgaaaacaaacatcaacaa 85  Q
    |||||||||| |||||| ||| ||| ||||||||| | ||||||||||||||||||| ||||||    
T  35062858 gttacagaaaatacaaattaatacgccgtatatagacagaacacccgaaaacaaacaccaacaa 35062795  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 10552658 - 10552604
Alignment:
Q  31 agtacaaactaagacgacgtatataggcggaacacccgaaaacaaacatcaacaa 85  Q
    ||||| ||||||  || ||||||||||||||||| ||||||||||||| ||||||    
T  10552658 agtaccaactaaagcgccgtatataggcggaacatccgaaaacaaacaccaacaa 10552604  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 28 - 118
Target Start/End: Complemental strand, 24436220 - 24436130
Alignment:
Q  28 gaaagtacaaactaagacgacgtatataggcggaacacccgaaaacaaacatcaacaaagacacccttacgatcaacaaccataaggacaa 118  Q
    ||||||||||||||||||| | ||||||| ||||||| |||||||||||||  ||||||||||| | |||||||||||  |||||||||||    
T  24436220 gaaagtacaaactaagacgtcatatatagtcggaacatccgaaaacaaacactaacaaagacactcctacgatcaacactcataaggacaa 24436130  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 31722069 - 31721998
Alignment:
Q  22 gttacagaaagtacaaactaagacgacgtatataggcggaacacccgaaaacaaacatcaacaaagacaccc 93  Q
    |||||||||||||||||||||| || ||||||||| |||||||||||||||||||||  ||||||| |||||    
T  31722069 gttacagaaagtacaaactaaggcgccgtatatagacggaacacccgaaaacaaacactaacaaaggcaccc 31721998  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 118
Target Start/End: Complemental strand, 31742536 - 31742466
Alignment:
Q  48 cgtatataggcggaacacccgaaaacaaacatcaacaaagacacccttacgatcaacaaccataaggacaa 118  Q
    ||||||||||||||||||||||||||||||| |  ||||||| ||||| ||||||| | ||||||||||||    
T  31742536 cgtatataggcggaacacccgaaaacaaacacctgcaaagactcccttgcgatcaaaacccataaggacaa 31742466  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 24071970 - 24072014
Alignment:
Q  48 cgtatataggcggaacacccgaaaacaaacatcaacaaagacacc 92  Q
    ||||||||||||||||||||||||| ||||||||  |||||||||    
T  24071970 cgtatataggcggaacacccgaaaataaacatcataaaagacacc 24072014  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 30097721 - 30097675
Alignment:
Q  33 tacaaactaa-gacgacgtatataggcggaacacccgaaaacaaaca 78  Q
    |||||||||| |||| ||||||||||||||||||||||||| |||||    
T  30097721 tacaaactaaagacgccgtatataggcggaacacccgaaaataaaca 30097675  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 1652561 - 1652654
Alignment:
Q  25 acagaaagtacaaactaa-gacgacgtatataggcggaacacccgaaaacaaacatcaacaaagacacccttacgatcaacaaccataaggacaa 118  Q
    |||||||||||||||||| | || ||||||||||||||||||||||||  ||||| | |||||||||||||| |||||||||  |||||||||||    
T  1652561 acagaaagtacaaactaaaggcgtcgtatataggcggaacacccgaaat-aaacacccacaaagacacccttgcgatcaacactcataaggacaa 1652654  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 7966748 - 7966843
Alignment:
Q  22 gttacagaaagtacaaactaagacgacgtatataggcggaacacccgaaaacaaacatcaacaaagacacccttacgatcaacaaccataaggacaa 118  Q
    ||||||||||||||||  ||||| | ||||||||| |||||||||||||||||||||  |||||||||||| || ||||| ||| |||||| |||||    
T  7966748 gttacagaaagtacaat-taagatgccgtatatagacggaacacccgaaaacaaacacaaacaaagacacctttgcgatccacacccataaagacaa 7966843  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 30935060 - 30935127
Alignment:
Q  23 ttacagaaagtacaaactaagacgacgtatataggcggaacacccgaaaacaaacatcaacaaagaca 90  Q
    |||| |||| |||||||||||  | |||||||| ||| |||||||||||||||||| |||||||||||    
T  30935060 ttactgaaaatacaaactaaggtgtcgtatataagcgaaacacccgaaaacaaacaccaacaaagaca 30935127  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 22948427 - 22948480
Alignment:
Q  41 aagacgacgtatataggcggaacacccgaaaacaaa-catcaacaaagacaccc 93  Q
    |||||| |||||||| |||||||||| ||||||||| || ||||||||||||||    
T  22948427 aagacgccgtatatatgcggaacacctgaaaacaaaacaccaacaaagacaccc 22948480  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 38485964 - 38485900
Alignment:
Q  22 gttacagaaagtacaaactaagacgacgtatataggcggaacacccgaaaacaaacatcaacaaa 86  Q
    ||||||||||||| |||||||| || |||| |||||||||||||||||||||||||| |||||||    
T  38485964 gttacagaaagtataaactaaggcgtcgtaaataggcggaacacccgaaaacaaacaccaacaaa 38485900  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 9350111 - 9350015
Alignment:
Q  22 gttacagaaagtacaaactaagacgacgtatataggcggaacacccgaaaacaaacatcaacaaagacacccttacgatcaacaaccataaggacaa 118  Q
    |||||| ||||||||||| ||| || ||||||||||||||||||| | ||| || || |||||||||||||| | | ||||||  ||||||||||||    
T  9350111 gttacaaaaagtacaaaccaaggcgccgtatataggcggaacacctggaaaaaatcaccaacaaagacacccctgcaatcaacccccataaggacaa 9350015  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 16828809 - 16828841
Alignment:
Q  48 cgtatataggcggaacacccgaaaacaaacatc 80  Q
    ||||||||||||||||||||||||| |||||||    
T  16828809 cgtatataggcggaacacccgaaaataaacatc 16828841  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 18681477 - 18681381
Alignment:
Q  22 gttacagaaagtacaaactaagacgacgtatataggcggaacacccgaaaacaaacatcaacaaagacacccttacgatcaacaaccataaggacaa 118  Q
    ||||||||||||||||||||||  | ||||||||||||||||||||||||||||| |  |||||||| |||  | | ||||||| ||||||| ||||    
T  18681477 gttacagaaagtacaaactaaggtgtcgtatataggcggaacacccgaaaacaaatactaacaaagaaacctctgcaatcaacacccataagaacaa 18681381  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 6173899 - 6173993
Alignment:
Q  22 gttacagaaagtacaaact-aagacgacgtatataggcggaacacccgaaaacaaacatcaacaaagacacccttacgatcaacaaccataagga 115  Q
    ||||| ||||||||||||| |||||  |||||||||| ||||||||| |||||||||| ||| | |||||||| | |||||| || |||||||||    
T  6173899 gttacggaaagtacaaactaaagacatcgtatataggtggaacacccaaaaacaaacaccaaaagagacacccctgcgatcagcacccataagga 6173993  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 29043993 - 29044049
Alignment:
Q  49 gtatataggcggaacacccgaaaacaaacatcaacaaagacacccttacgatcaaca 105  Q
    |||||||||||||||||| ||||||||| | |||||||||||||| | |||||||||    
T  29043993 gtatataggcggaacacctgaaaacaaaaaccaacaaagacacccctgcgatcaaca 29044049  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 31902094 - 31902190
Alignment:
Q  22 gttacagaaagtacaaactaagacgacgtatataggcggaacacccgaaaacaaacatcaacaaagacacccttacgatcaacaaccataaggacaa 118  Q
    |||||||||||||||||  ||  || ||||||||||  |||||||||||||| |||| |||| ||| || || | ||||||||| | ||||||||||    
T  31902094 gttacagaaagtacaaatcaaagcgccgtatataggtagaacacccgaaaactaacaccaaccaaggcaaccctgcgatcaacaccaataaggacaa 31902190  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 915159 - 915217
Alignment:
Q  59 ggaacacccgaaaacaaacatcaacaaagacacccttacgatcaacaaccataaggacaa 118  Q
    ||||||||||||||||||||  ||||||||||||| |||| ||| || ||||||||||||    
T  915159 ggaacacccgaaaacaaacactaacaaagacacccctacg-tcaccacccataaggacaa 915217  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 78
Target Start/End: Original strand, 24165886 - 24165915
Alignment:
Q  49 gtatataggcggaacacccgaaaacaaaca 78  Q
    ||||||||||||||||||||||||||||||    
T  24165886 gtatataggcggaacacccgaaaacaaaca 24165915  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 27774991 - 27774910
Alignment:
Q  24 tacagaaagtacaaactaagacgacgtatataggcggaacacccgaaaacaaacatcaacaaagacacccttacgatcaaca 105  Q
    |||| ||||||||||||||| || |||||||||  |||||| || |||||||||| |||||||||||| | |||||||||||    
T  27774991 tacaaaaagtacaaactaaggcgtcgtatatagatggaacatccaaaaacaaacaccaacaaagacactcctacgatcaaca 27774910  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 118
Target Start/End: Original strand, 6946878 - 6946949
Alignment:
Q  48 cgtatataggcggaacacccgaaaacaaa-catcaacaaagacacccttacgatcaacaaccataaggacaa 118  Q
    |||||||||  ||||||| |||||||||| || |||||||||||||||| ||||||||| ||||||||||||    
T  6946878 cgtatatagatggaacactcgaaaacaaaacaccaacaaagacacccttgcgatcaacacccataaggacaa 6946949  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 12794511 - 12794419
Alignment:
Q  27 agaaagtacaaactaa-gacgacgtatataggcggaacacccgaaaacaaacatcaacaaagacacccttacgatcaacaaccataaggacaa 118  Q
    |||| ||||||||||| | || ||||||||| ||||||| |||||||| |||| ||||||||||||   | ||||||||| ||| ||||||||    
T  12794511 agaaggtacaaactaaaggcgccgtatatagacggaacatccgaaaacgaacaccaacaaagacacatctgcgatcaacacccaaaaggacaa 12794419  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 17278171 - 17278215
Alignment:
Q  48 cgtatataggcggaacacccgaaaacaaacatcaacaaagacacc 92  Q
    ||||||||||||||||||||||||| ||||||||  |||||||||    
T  17278171 cgtatataggcggaacacccgaaaataaacatcataaaagacacc 17278215  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 9224305 - 9224249
Alignment:
Q  48 cgtatataggcggaacacccgaaaacaaacatcaacaaagacacccttacgatcaac 104  Q
    |||||||||  |||||||||||||| ||||| ||||||||||| || | ||||||||    
T  9224305 cgtatatagaaggaacacccgaaaataaacaccaacaaagacatccctgcgatcaac 9224249  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 43077339 - 43077282
Alignment:
Q  48 cgtatataggcggaacacccgaaaacaaacatcaacaaagacacccttacgatcaaca 105  Q
    ||||||||||| ||||||| ||||| ||||| |||||||||||||| | |||||||||    
T  43077339 cgtatataggcagaacacctgaaaataaacaccaacaaagacacccctgcgatcaaca 43077282  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 118
Target Start/End: Original strand, 43373801 - 43373870
Alignment:
Q  49 gtatataggcggaacacccgaaaacaaacatcaacaaagacacccttacgatcaacaaccataaggacaa 118  Q
    ||||||||||| ||||||||||||||||   |||||||||||||| |  ||||||||  |||||||||||    
T  43373801 gtatataggcgaaacacccgaaaacaaaacccaacaaagacacccatgtgatcaacacacataaggacaa 43373870  T

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