View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3628_low_38 (Length: 250)
Name: NF3628_low_38
Description: NF3628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3628_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 71 - 242
Target Start/End: Original strand, 50675613 - 50675784
Alignment:
| Q |
71 |
atgaaatatataaggcatattcttttgtcaaaattttactggccatgcaaattgatgatcattcaagtgttttgaattttataagggtgtgcaatgctag |
170 |
Q |
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| T |
50675613 |
atgaaatatataaggcatattcttttgtcaaaattttactggccatgcaaattgatgatcattcaagtgttttgaattttagaagggtgtgcaatgctag |
50675712 |
T |
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| Q |
171 |
ttcaaatgatatttcagtagaaaatgttttctcctttgtacaatgattttcgtttaaatgacttttcttctc |
242 |
Q |
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| T |
50675713 |
ttcaaatgatatttcagtagaaaatattttatcctttgtacaatgattttcgtttaaatgacttttcttctc |
50675784 |
T |
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Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 98 - 235
Target Start/End: Original strand, 48885871 - 48886008
Alignment:
| Q |
98 |
tcaaaattttactggccatgcaaattgatgatcattcaagtgttttgaattttataagggtgtgcaatgctagttcaaatgatatttcagtagaaaatgt |
197 |
Q |
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| T |
48885871 |
tcaaaatttgactgcccatgcaaattgacaatcattcaagtgttgtgaattttagaagtgtttgcaacgctagttcaaatgatggttcattacaaaatgt |
48885970 |
T |
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| Q |
198 |
tttctcctttgtacaatgattttcgtttaaatgacttt |
235 |
Q |
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| T |
48885971 |
tttctcctttgtatagtgattgtcttttaaatgtcttt |
48886008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 25048984 - 25049054
Alignment:
| Q |
108 |
actggccatgcaaattgatgatcattcaagtgttttgaattttataagggtgtgcaatgctagttcaaatg |
178 |
Q |
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| T |
25048984 |
actgaccatgcaaaatgatgataattcaagtgttttgaattttagaggggtttgcaatactagtttaaatg |
25049054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 210
Target Start/End: Original strand, 45245908 - 45245989
Alignment:
| Q |
131 |
attcaagtgttttgaattttataagggtgtgcaatgcta--gttcaaatgatatttcagtagaaaatgttttctcctttgta |
210 |
Q |
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|||||| || ||||||||||| |||||| ||| |||||| ||||||||||| |||| |||| ||||||||||| |||||| |
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| T |
45245908 |
attcaaatgatttgaattttagaagggtttgccatgctatagttcaaatgatggttcattagagaatgttttctcttttgta |
45245989 |
T |
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