View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3628_low_4 (Length: 494)
Name: NF3628_low_4
Description: NF3628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3628_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 484
Target Start/End: Original strand, 30321207 - 30321668
Alignment:
| Q |
18 |
tcattgtgtcaaattcatcgccgggagaagaaaaaatatatatataattagcccttgggtgaccctattgtctctctaacaaaatcttagtttagattct |
117 |
Q |
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| T |
30321207 |
tcattgtgtcaaattcatcgccgggagaagaaaaaatatata----attagctcttgggtgaccctattgtctctctaacaaaatcttagtttagattat |
30321302 |
T |
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| Q |
118 |
taaaagattgaattttgataaatttgatccataaattaatttagagctaaaattttatcaaagagaatagatatagactagaaaggattaaatccaagag |
217 |
Q |
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| T |
30321303 |
taaaagattgaattttgataaatttgatccataaattaatttagagctaaaattttatcaaagagaatagatatagactagaaaggattaaatccaagag |
30321402 |
T |
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| Q |
218 |
agtaaaatgtgtgaaagatannnnnnnnnnnnnnnnnnaaatcttagatatttttacactgattaaagtaattaccagaacacgtcaattaaaatttata |
317 |
Q |
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| T |
30321403 |
agtaaaatgtgtgagagatattttttgtttatttttt-aaatcttagatatttttacactgattaaagtaattaccagaacacgtcaattaaaatttcta |
30321501 |
T |
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| Q |
318 |
tttatatcaacaacaaaaaatgtaattgttttatcttgttagtatcatttactgttcctgtaaaaagtaataaaaacaagggaaattagtgtggacctca |
417 |
Q |
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| T |
30321502 |
tttatatcaacaacaaaaaatgtaattgttttatcttgttagtatcatttactgttcctgtaaaaagtaataaaaacaagggaaattagtgtggacctca |
30321601 |
T |
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| Q |
418 |
cactattgtgtttatgtgaacaaaagcactacattaactcattaagcatatgaacttcacaggttct |
484 |
Q |
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| T |
30321602 |
cactattgtgtttatgtgaacaaaaacactacattaactcattaagcatatgaacttcacaggttct |
30321668 |
T |
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