View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3628_low_42 (Length: 240)
Name: NF3628_low_42
Description: NF3628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3628_low_42 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 2019891 - 2020095
Alignment:
| Q |
1 |
tgcttattttcttgtcaaagcttacttcatctaagtttatcttattgtttgcttaaacctccatcgacgattgaaggcttt-agaacttgaaaagtcgtt |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
2019891 |
tgcttattttcttgtcaaagcttacttcatctaagtttatcttattgtttgcttaaacctccatcgacgattgaaggctttaagaacttgaaaagtctta |
2019990 |
T |
|
| Q |
100 |
a-------ctaattactatgtctcaagatgcttttgagaatttgatatatggttgccatctgcttgaaaaattgatattggatgaatttgatggtttcac |
192 |
Q |
| |
|
| | ||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
2019991 |
agttggatcacattactatgtctcaagatgattttgagattttgatatctggttgccctctgcttgaaagattgatattgattgaatttgatggtttcac |
2020090 |
T |
|
| Q |
193 |
aaaaa |
197 |
Q |
| |
|
||||| |
|
|
| T |
2020091 |
aaaaa |
2020095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 2010678 - 2010882
Alignment:
| Q |
1 |
tgcttattttcttgtcaaagcttacttcatctaagtttatcttattgtttgcttaaacctccatcgacgattgaaggcttt-agaacttgaaaagtcgtt |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||| ||||||||||||||| | |
|
|
| T |
2010678 |
tgcttattttcttgtcaaagcttacttcatctaagtttatcttatggtttgcttaaacctccatcgacaattgtaggctttaagaacttgaaaagtcttg |
2010777 |
T |
|
| Q |
100 |
a-------ctaattactatgtctcaagatgcttttgagaatttgatatatggttgccatctgcttgaaaaattgatattggatgaatttgatggtttcac |
192 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||| ||| |||||||| | ||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
2010778 |
agttggatcactttactatgtctcaagatgcttttgagaatttgttatttggttgccctttgcttgaaaaattgatattcgatgaatttgagggtttcac |
2010877 |
T |
|
| Q |
193 |
aaaaa |
197 |
Q |
| |
|
||||| |
|
|
| T |
2010878 |
aaaaa |
2010882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 2012088 - 2012287
Alignment:
| Q |
1 |
tgcttattttcttgtcaaagcttacttcatctaagtttatcttattgtttgcttaaacctccatcgacgattgaaggctt-tagaacttgaaaagtcgtt |
99 |
Q |
| |
|
||||||||||||||||||||||||| | |||||| |||| || ||||||||||||||||||||||| |||||||||||| ||||||||||||||| || |
|
|
| T |
2012088 |
tgcttattttcttgtcaaagcttacattatctaacattattttcttgtttgcttaaacctccatcgatgattgaaggcttgaagaacttgaaaagtcttt |
2012187 |
T |
|
| Q |
100 |
act-------aattactatgtctcaagatgcttttgagaatttgatatatggttgccatctgcttgaaaaattgatattggatgaatttgatggtttcac |
192 |
Q |
| |
|
| | | ||||||| ||||||||||||||||||| |||||||| | |||||| |||||||||||||||||| |||| |||||||| |||||||| |
|
|
| T |
2012188 |
atttagttaaagttactatttctcaagatgcttttgagagtttgatatctagttgccctctgcttgaaaaattgatgttggcagaatttgacggtttcac |
2012287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 2006595 - 2006794
Alignment:
| Q |
1 |
tgcttattttcttgtcaaagcttacttcatctaagtttatcttattgtttgcttaaacctccatcgacgattgaaggctt-tagaacttgaaaagtcgtt |
99 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| | |
|
|
| T |
2006595 |
tgcttattttcttgtcaaagtttacatcatctaacattatattattgtttgcttaaacctccatcgacgattgaaggcttgaagaacttaaaaagtcttg |
2006694 |
T |
|
| Q |
100 |
a-------ctaattactatgtctcaagatgcttttgagaatttgatatatggttgccatctgcttgaaaaattgatattggatgaatttgatggtttcac |
192 |
Q |
| |
|
| | ||| |||||||| ||||||||||||||||||||| | |||||| |||||||||||| |||| |||| ||| ||||||||||||| |
|
|
| T |
2006695 |
atttggatcatgttagcatgtctcagtatgcttttgagaatttgatatctagttgccctctgcttgaaaatttgacattgacagaacttgatggtttcac |
2006794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 4334845 - 4334794
Alignment:
| Q |
46 |
tgtttgcttaaacctccatcgacgattgaaggctttag-aacttgaaaagtc |
96 |
Q |
| |
|
|||||||||||||||||| ||| | ||||||||||||| ||||||||||||| |
|
|
| T |
4334845 |
tgtttgcttaaacctccaacgatgtttgaaggctttagaaacttgaaaagtc |
4334794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 192
Target Start/End: Original strand, 20953257 - 20953335
Alignment:
| Q |
114 |
ctcaagatgcttttgagaatttgatatatggttgccatctgcttgaaaaattgatattggatgaatttgatggtttcac |
192 |
Q |
| |
|
|||||||||||||||| || ||||| | ||| |||| ||||||||||||||||| |||| ||| ||||||||||||| |
|
|
| T |
20953257 |
ctcaagatgcttttgaaaacttgatctctggctgccctctgcttgaaaaattgaaattgatagaagttgatggtttcac |
20953335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 20923621 - 20923717
Alignment:
| Q |
1 |
tgcttattttcttgtcaaagcttacttcatctaagtttatcttattgtttgcttaaacctccatcgacgattgaaggcttta-gaacttgaaaagtc |
96 |
Q |
| |
|
|||||||| ||||||||||| |||| |||| ||| ||| | || || || ||||||||||||| ||| | |||||||||| | |||||||||||||| |
|
|
| T |
20923621 |
tgcttattctcttgtcaaagtttacatcatttaaatttgttttgttcttcgcttaaacctccagcgatgtttgaaggcttcatgaacttgaaaagtc |
20923717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 20934719 - 20934777
Alignment:
| Q |
114 |
ctcaagatgcttttgagaatttgatatatggttgccatctgcttgaaaaattgatattg |
172 |
Q |
| |
|
|||||||||||||||| || ||||||| ||| |||| |||||||||||||||| |||| |
|
|
| T |
20934719 |
ctcaagatgcttttgaaaacttgatatctggctgccccctgcttgaaaaattgaaattg |
20934777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University