View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3628_low_43 (Length: 240)

Name: NF3628_low_43
Description: NF3628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3628_low_43
NF3628_low_43
[»] chr5 (9 HSPs)
chr5 (144-220)||(19907783-19907859)
chr5 (115-211)||(27692729-27692824)
chr5 (39-82)||(43300738-43300781)
chr5 (42-82)||(41958107-41958147)
chr5 (42-81)||(18739128-18739167)
chr5 (42-76)||(3175257-3175291)
chr5 (42-84)||(13626766-13626808)
chr5 (41-78)||(22270199-22270236)
chr5 (42-79)||(38394981-38395018)
[»] chr4 (10 HSPs)
chr4 (115-215)||(15857245-15857344)
chr4 (115-211)||(49227930-49228025)
chr4 (42-84)||(9816458-9816500)
chr4 (42-84)||(33753007-33753049)
chr4 (41-84)||(16401265-16401308)
chr4 (42-76)||(23217291-23217325)
chr4 (42-83)||(29947674-29947716)
chr4 (42-83)||(38115928-38115969)
chr4 (42-78)||(3186696-3186732)
chr4 (42-78)||(20038724-20038760)
[»] chr8 (6 HSPs)
chr8 (1-41)||(10679779-10679819)
chr8 (42-76)||(1669119-1669153)
chr8 (42-76)||(16659913-16659947)
chr8 (41-79)||(32382405-32382443)
chr8 (41-79)||(32436360-32436398)
chr8 (42-76)||(38520297-38520331)
[»] chr7 (7 HSPs)
chr7 (40-83)||(8363951-8363994)
chr7 (115-211)||(23559264-23559359)
chr7 (115-211)||(44380060-44380155)
chr7 (42-83)||(38871472-38871513)
chr7 (115-211)||(44371206-44371301)
chr7 (42-82)||(44660873-44660913)
chr7 (42-83)||(21451990-21452031)
[»] chr1 (4 HSPs)
chr1 (42-84)||(3288021-3288063)
chr1 (46-83)||(20727825-20727862)
chr1 (39-84)||(5733846-5733891)
chr1 (1-41)||(32161749-32161789)
[»] chr6 (6 HSPs)
chr6 (42-83)||(6807395-6807436)
chr6 (115-211)||(20714593-20714688)
chr6 (42-83)||(7171737-7171778)
chr6 (42-83)||(32398534-32398575)
chr6 (39-75)||(9303612-9303648)
chr6 (51-83)||(10894901-10894933)
[»] chr3 (5 HSPs)
chr3 (41-76)||(2337886-2337921)
chr3 (41-83)||(2736795-2736837)
chr3 (41-83)||(40925842-40925884)
chr3 (40-84)||(14195158-14195202)
chr3 (42-78)||(22126360-22126396)
[»] chr2 (3 HSPs)
chr2 (41-76)||(3934364-3934399)
chr2 (45-84)||(41318321-41318360)
chr2 (42-76)||(38974743-38974777)
[»] scaffold0393 (1 HSPs)
scaffold0393 (42-76)||(10626-10660)
[»] scaffold0024 (1 HSPs)
scaffold0024 (42-79)||(11736-11773)


Alignment Details
Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 144 - 220
Target Start/End: Complemental strand, 19907859 - 19907783
Alignment:
Q  144 tttaaaaagtaaagatatattatcagatccatactgttgtttattagagaaattagggaacatatacaaccattgat 220  Q
    |||||||||||||| ||||| ||||||  |||||  |||| ||||||||||||||||||||||| ||||||||||||    
T  19907859 tttaaaaagtaaaggtatatgatcagaggcatacctttgtatattagagaaattagggaacataaacaaccattgat 19907783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 27692824 - 27692729
Alignment:
Q  115 tatatccaaatgagagttaggaaaatgtttttaaaaagtaaagatatattatcagatccatactgttgtttattagagaaattagggaacatataca 211  Q
    |||||||||||||||||||  ||| | |||| ||||||||||| ||||| ||||||  |||||  |||| ||||||| |||||| ||||||||||||    
T  27692824 tatatccaaatgagagttac-aaatttttttaaaaaagtaaaggtatatgatcagaggcatacctttgtatattagaaaaattatggaacatataca 27692729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 43300781 - 43300738
Alignment:
Q  39 aatcagtggcggagccagacaaaaaagtttgaggtggccgccat 82  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||    
T  43300781 aatcagtggcggagccagacaaaaatgtttggggtggccgccat 43300738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 41958107 - 41958147
Alignment:
Q  42 cagtggcggagccagacaaaaaagtttgaggtggccgccat 82  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  41958107 cagtggcggagccagacaaaaatgtttggggtggccgccat 41958147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 18739128 - 18739167
Alignment:
Q  42 cagtggcggagccagacaaaaaagtttgaggtggccgcca 81  Q
    |||||||||||| ||||||||||||||| |||||||||||    
T  18739128 cagtggcggagcaagacaaaaaagtttggggtggccgcca 18739167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Complemental strand, 3175291 - 3175257
Alignment:
Q  42 cagtggcggagccagacaaaaaagtttgaggtggc 76  Q
    |||||||||||||||||||||||||||| ||||||    
T  3175291 cagtggcggagccagacaaaaaagtttggggtggc 3175257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 13626766 - 13626808
Alignment:
Q  42 cagtggcggagccagacaaaaaagtttgaggtggccgccatca 84  Q
    ||||||||||||||||||||||  ||||||||||||| |||||    
T  13626766 cagtggcggagccagacaaaaatatttgaggtggccgtcatca 13626808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 22270199 - 22270236
Alignment:
Q  41 tcagtggcggagccagacaaaaaagtttgaggtggccg 78  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  22270199 tcagtggcggagccagacaaaaatgtttggggtggccg 22270236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 38394981 - 38395018
Alignment:
Q  42 cagtggcggagccagacaaaaaagtttgaggtggccgc 79  Q
    |||||||||||||||||||||| ||||| |||||||||    
T  38394981 cagtggcggagccagacaaaaaggtttggggtggccgc 38395018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 15857245 - 15857344
Alignment:
Q  115 tatatccaaatgagagttaggaaaatgtttttaaaaagtaaagatatattatcagatccatactgttgtttattagagaaattagggaacatatacaacc 214  Q
    ||||||||||||||||||   || || |||||||||||||||| ||||| ||||||  |||||  |||| ||||||||||||||||||||||| ||||||    
T  15857245 tatatccaaatgagagtttc-aatatttttttaaaaagtaaaggtatatgatcagaggcatacctttgtatattagagaaattagggaacataaacaacc 15857343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 49228025 - 49227930
Alignment:
Q  115 tatatccaaatgagagttaggaaaatgtttttaaaaa-gtaaagatatattatcagatccatactgttgtttattagagaaattagggaacatataca 211  Q
    |||||||||||||||||||  ||||| |||||||||| |||||| ||||| ||||||  |||||  |||| ||||||| |||||| ||||||||||||    
T  49228025 tatatccaaatgagagtta--aaaatttttttaaaaaagtaaaggtatatgatcagaggcatacctttgtatattagaaaaattatggaacatataca 49227930  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 84
Target Start/End: Complemental strand, 9816500 - 9816458
Alignment:
Q  42 cagtggcggagccagacaaaaaagtttgaggtggccgccatca 84  Q
    |||||||||||||||||||||||||||| |||| |||||||||    
T  9816500 cagtggcggagccagacaaaaaagtttggggtgaccgccatca 9816458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 84
Target Start/End: Complemental strand, 33753049 - 33753007
Alignment:
Q  42 cagtggcggagccagacaaaaaagtttgaggtggccgccatca 84  Q
    ||||||| |||||||||||||||||||| ||||||||||||||    
T  33753049 cagtggcagagccagacaaaaaagtttggggtggccgccatca 33753007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 16401308 - 16401265
Alignment:
Q  41 tcagtggcggagccagacaaaaaagtttgaggtggccgccatca 84  Q
    |||||| |||||||||||||||||||||||||| ||| ||||||    
T  16401308 tcagtgacggagccagacaaaaaagtttgaggtagcctccatca 16401265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 23217291 - 23217325
Alignment:
Q  42 cagtggcggagccagacaaaaaagtttgaggtggc 76  Q
    |||||||||||||||||||||||||||| ||||||    
T  23217291 cagtggcggagccagacaaaaaagtttggggtggc 23217325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 29947716 - 29947674
Alignment:
Q  42 cagtggcggagccagacaa-aaaagtttgaggtggccgccatc 83  Q
    ||||||||||||||||||| ||||||||| |||||||||||||    
T  29947716 cagtggcggagccagacaaaaaaagtttggggtggccgccatc 29947674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 38115969 - 38115928
Alignment:
Q  42 cagtggcggagccagacaaaaaagtttgaggtggccgccatc 83  Q
    ||||||||||||| |||||||||||||| |||||||| ||||    
T  38115969 cagtggcggagcccgacaaaaaagtttggggtggccggcatc 38115928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 3186696 - 3186732
Alignment:
Q  42 cagtggcggagccagacaaaaaagtttgaggtggccg 78  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  3186696 cagtggcggagccagacaaaaatgtttggggtggccg 3186732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 20038760 - 20038724
Alignment:
Q  42 cagtggcggagccagacaaaaaagtttgaggtggccg 78  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  20038760 cagtggcggagccagacaaaaaaatttggggtggccg 20038724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 10679819 - 10679779
Alignment:
Q  1 ttattttgtcttgtgcattaacaaatcaaatatggtacaat 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  10679819 ttattttgtcttgtgcattaacaaatcaaatatggtacaat 10679779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Complemental strand, 1669153 - 1669119
Alignment:
Q  42 cagtggcggagccagacaaaaaagtttgaggtggc 76  Q
    |||||||||||||||||||||||||||| ||||||    
T  1669153 cagtggcggagccagacaaaaaagtttggggtggc 1669119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Complemental strand, 16659947 - 16659913
Alignment:
Q  42 cagtggcggagccagacaaaaaagtttgaggtggc 76  Q
    |||||||||||||||||||||||||||| ||||||    
T  16659947 cagtggcggagccagacaaaaaagtttggggtggc 16659913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 32382443 - 32382405
Alignment:
Q  41 tcagtggcggagccagacaaaaaagtttgaggtggccgc 79  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  32382443 tcagtggcggagccagacaaaaaaatttggggtggccgc 32382405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 32436398 - 32436360
Alignment:
Q  41 tcagtggcggagccagacaaaaaagtttgaggtggccgc 79  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  32436398 tcagtggcggagccagacaaaaaaatttggggtggccgc 32436360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 38520297 - 38520331
Alignment:
Q  42 cagtggcggagccagacaaaaaagtttgaggtggc 76  Q
    |||||||||||||||||||||||||||| ||||||    
T  38520297 cagtggcggagccagacaaaaaagtttggggtggc 38520331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 8363994 - 8363951
Alignment:
Q  40 atcagtggcggagccagacaaaaaagtttgaggtggccgccatc 83  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  8363994 atcagtggcggagccagacaaaaaagtttggggtggccgccatc 8363951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 211
Target Start/End: Original strand, 23559264 - 23559359
Alignment:
Q  115 tatatccaaatgagagttaggaaaatgtttttaaaaagtaaagatatattatcagatccatactgttgtttattagagaaattagggaacatataca 211  Q
    |||||||||||||||||||  ||| | |||| ||||||||||| ||||| ||||||  |||||  |||| ||||||| |||||| ||||||||||||    
T  23559264 tatatccaaatgagagttac-aaatttttttaaaaaagtaaaggtatatgatcagaggcatacctttgtatattagaaaaattatggaacatataca 23559359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 44380155 - 44380060
Alignment:
Q  115 tatatccaaatgagagttaggaaaatgtttttaaaaagtaaagatatattatcagatccatactgttgtttattagagaaattagggaacatataca 211  Q
    |||||||||||||||||||  ||| | |||| ||||||||||| ||||| ||||||  |||||  |||| ||||||| |||||| ||||||||||||    
T  44380155 tatatccaaatgagagttac-aaatttttttaaaaaagtaaaggtatatgatcagaggcatacctttgtatattagaaaaattatggaacatataca 44380060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 38871472 - 38871513
Alignment:
Q  42 cagtggcggagccagacaaaaaagtttgaggtggccgccatc 83  Q
    ||||||||||||||||||||||||||||  ||||||||||||    
T  38871472 cagtggcggagccagacaaaaaagtttggagtggccgccatc 38871513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 44371301 - 44371206
Alignment:
Q  115 tatatccaaatgagagttaggaaaatgtttttaaaaagtaaagatatattatcagatccatactgttgtttattagagaaattagggaacatataca 211  Q
    |||||||||||||||||||  ||| | |||  ||||||||||| ||||| ||||||  |||||  |||| ||||||| |||||| ||||||||||||    
T  44371301 tatatccaaatgagagttac-aaattttttaaaaaaagtaaaggtatatgatcagaggcatacctttgtatattagaaaaattatggaacatataca 44371206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 44660913 - 44660873
Alignment:
Q  42 cagtggcggagccagacaaaaaagtttgaggtggccgccat 82  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  44660913 cagtggcggagccagacaaaaatgtttggggtggccgccat 44660873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 21451990 - 21452031
Alignment:
Q  42 cagtggcggagccagacaaaaaagtttgaggtggccgccatc 83  Q
    ||||||||||||||| ||||||| |||| |||||||||||||    
T  21451990 cagtggcggagccagccaaaaaattttggggtggccgccatc 21452031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 3288021 - 3288063
Alignment:
Q  42 cagtggcggagccagacaaaaaagtttgaggtggccgccatca 84  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  3288021 cagtggcggagccagacaaaaaagtttggggtggccgccatca 3288063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 20727862 - 20727825
Alignment:
Q  46 ggcggagccagacaaaaaagtttgaggtggccgccatc 83  Q
    |||||||||||||||||||||||| |||||||||||||    
T  20727862 ggcggagccagacaaaaaagtttggggtggccgccatc 20727825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 5733891 - 5733846
Alignment:
Q  39 aatcagtggcggagccagacaaaaaagtttgaggtggccgccatca 84  Q
    |||||||||||||||||||| ||||| |||| ||||||||| ||||    
T  5733891 aatcagtggcggagccagaccaaaaattttggggtggccgctatca 5733846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 32161749 - 32161789
Alignment:
Q  1 ttattttgtcttgtgcattaacaaatcaaatatggtacaat 41  Q
    ||||||||||||||||||||||| |||||| | ||||||||    
T  32161749 ttattttgtcttgtgcattaacatatcaaacaaggtacaat 32161789  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 6807436 - 6807395
Alignment:
Q  42 cagtggcggagccagacaaaaaagtttgaggtggccgccatc 83  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  6807436 cagtggcggagccagacaaaaaagtttggggtggccgccatc 6807395  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 20714688 - 20714593
Alignment:
Q  115 tatatccaaatgagagttaggaaaatgtttttaaaaagtaaagatatattatcagatccatactgttgtttattagagaaattagggaacatataca 211  Q
    |||||||||||||||||||  ||| | |||| ||||||||||| ||||| ||||||  |||||  |||| ||||||| |||||| ||||||||||||    
T  20714688 tatatccaaatgagagttac-aaatttttttaaaaaagtaaaggtatatgatcagaggcatacctttgtatattagaaaaattatggaacatataca 20714593  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 7171778 - 7171737
Alignment:
Q  42 cagtggcggagccagacaaaaaagtttgaggtggccgccatc 83  Q
    |||||||||||||||||||||| ||||| |||||||| ||||    
T  7171778 cagtggcggagccagacaaaaatgtttggggtggccgtcatc 7171737  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 32398575 - 32398534
Alignment:
Q  42 cagtggcggagccagacaaaaaagtttgaggtggccgccatc 83  Q
    ||||||||||||||| ||||||| |||| |||||||||||||    
T  32398575 cagtggcggagccagccaaaaaattttggggtggccgccatc 32398534  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 9303648 - 9303612
Alignment:
Q  39 aatcagtggcggagccagacaaaaaagtttgaggtgg 75  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  9303648 aatcagtggtggagccagacaaaaaagtttggggtgg 9303612  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 10894901 - 10894933
Alignment:
Q  51 agccagacaaaaaagtttgaggtggccgccatc 83  Q
    ||||||||||||||||||| |||||||||||||    
T  10894901 agccagacaaaaaagtttggggtggccgccatc 10894933  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 76
Target Start/End: Original strand, 2337886 - 2337921
Alignment:
Q  41 tcagtggcggagccagacaaaaaagtttgaggtggc 76  Q
    ||||||||||||||||||||||||||||| ||||||    
T  2337886 tcagtggcggagccagacaaaaaagtttggggtggc 2337921  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 2736837 - 2736795
Alignment:
Q  41 tcagtggcggagccagacaaaaaagtttgaggtggccgccatc 83  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||    
T  2736837 tcagtggcggagccagacaaaaatgtttggggtggccgtcatc 2736795  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 40925884 - 40925842
Alignment:
Q  41 tcagtggcggagccagacaaaaaagtttgaggtggccgccatc 83  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||    
T  40925884 tcagtggcggagccagacaaaaatgtttggggtggccgtcatc 40925842  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 14195158 - 14195202
Alignment:
Q  40 atcagtggcggagccagacaaaaaagtttgaggtggccgccatca 84  Q
    ||||||||||||| |||||||||||||||| |||| | |||||||    
T  14195158 atcagtggcggagtcagacaaaaaagtttggggtgactgccatca 14195202  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 22126360 - 22126396
Alignment:
Q  42 cagtggcggagccagacaaaaaagtttgaggtggccg 78  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  22126360 cagtggcggagccagacaaaaatgtttggggtggccg 22126396  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 76
Target Start/End: Original strand, 3934364 - 3934399
Alignment:
Q  41 tcagtggcggagccagacaaaaaagtttgaggtggc 76  Q
    ||||||||||||||||||||||||||||| ||||||    
T  3934364 tcagtggcggagccagacaaaaaagtttggggtggc 3934399  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 84
Target Start/End: Complemental strand, 41318360 - 41318321
Alignment:
Q  45 tggcggagccagacaaaaaagtttgaggtggccgccatca 84  Q
    |||||||| |||||||||||||||| ||||||||||||||    
T  41318360 tggcggagtcagacaaaaaagtttggggtggccgccatca 41318321  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 38974743 - 38974777
Alignment:
Q  42 cagtggcggagccagacaaaaaagtttgaggtggc 76  Q
    |||||||||||||||||||||||||||| ||||||    
T  38974743 cagtggcggagccagacaaaaaagtttggggtggc 38974777  T

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Target: scaffold0393 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 10626 - 10660
Alignment:
Q  42 cagtggcggagccagacaaaaaagtttgaggtggc 76  Q
    |||||||||||||||||||||||||||| ||||||    
T  10626 cagtggcggagccagacaaaaaagtttggggtggc 10660  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 11736 - 11773
Alignment:
Q  42 cagtggcggagccagacaaaaaagtttgaggtggccgc 79  Q
    |||||||||||||||||||||| ||||| |||||||||    
T  11736 cagtggcggagccagacaaaaaggtttggggtggccgc 11773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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