View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3628_low_47 (Length: 237)
Name: NF3628_low_47
Description: NF3628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3628_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 39354987 - 39354766
Alignment:
| Q |
1 |
ctgcactgaattacaattcatgacgccaattaggataacagcagaatacatggaccccatggcattaaaaagatcttgctccttttcactgcaataatga |
100 |
Q |
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| T |
39354987 |
ctgcactgaattacaattcatgacgccaattaggataacagcagaatacatggaccccatggcattaaaaagatcttgctccttttcactgcaataatga |
39354888 |
T |
|
| Q |
101 |
aatgaaattttacaaattcaagagtttgaagccgtaaaaaattctagttttccaatttgaatttacattttggagccaaggtcccaaaacatgcttccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39354887 |
aatgaaattttacaaattcaagagtttgaagccgtaaaaaattctagttttccaatttgaatttacattttggagccaaggtcccaaaacatgcttccaa |
39354788 |
T |
|
| Q |
201 |
gcaaaacagccacggcggttga |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
39354787 |
gcaaaacagccacggcggttga |
39354766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 39340167 - 39339945
Alignment:
| Q |
1 |
ctgcactgaattacaattcatgacgccaattaggataacagcagaatacatggaccccatggcattaaaaagatcttgctccttttcactgcaataatga |
100 |
Q |
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|||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39340167 |
ctgcactgaattaccattcatgacgccaataaggataacagcagcatacatggaccccatggcattaaaaagatcttgctccttttcactgcaataatga |
39340068 |
T |
|
| Q |
101 |
aatgaaattttacaaattcaagagtttgaagccgtaaaaaa-ttctagttttccaatttgaatttacattttggagccaaggtcccaaaacatgcttcca |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
39340067 |
aatgaaattttacaaattcaagagtttgaagccgtaaaaaatttctagttttccaatttgattttacattttggagctaaggtcccaaaacatgcttcct |
39339968 |
T |
|
| Q |
200 |
agcaaaacagccacggcggttga |
222 |
Q |
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|||||||||||||| |||||||| |
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| T |
39339967 |
agcaaaacagccactgcggttga |
39339945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 39367581 - 39367367
Alignment:
| Q |
1 |
ctgcactgaattacaattcatgacgccaattaggataacagcagaatacatggaccccatggcattaaaaagatcttgctccttttcactgcaataatga |
100 |
Q |
| |
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|||||||||||||| ||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| || ||||||||||||| |||| |
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| T |
39367581 |
ctgcactgaattactattcatggcgccaattaggataacagcagcatacatggatcccatggcattaaaaagatcttggtctttttcactgcaatgatga |
39367482 |
T |
|
| Q |
101 |
aatgaaattttacaaattcaagagtttgaagccgtaaaaaa-ttctagttttccaatttgaatttacattttggagccaaggtcccaaaacatgcttcca |
199 |
Q |
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|||||||||||||||| |||||||| ||||||| |||||||||| |||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
39367481 |
aatgaaattttacaaa--------cttgaagccataaaaaatttctagttttacaatttgatcttacattttggagccaaggttccaaaacatgcttcca |
39367390 |
T |
|
| Q |
200 |
agcaaaacagccacggcggttga |
222 |
Q |
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|||||||||||||| || ||||| |
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| T |
39367389 |
agcaaaacagccaccgcagttga |
39367367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 39562833 - 39563054
Alignment:
| Q |
1 |
ctgcactgaattacaattcatgacgccaattaggataacagcagaatacatggaccccatggcattaaaaagatcttgctccttttcactgcaataa-tg |
99 |
Q |
| |
|
||||||||||||| |||| ||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| || || || |
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| T |
39562833 |
ctgcactgaattagcattcttgatgccaattacgatcacagcagaatacatggaccccatggcattaaaaagatcttgttccttttcactgaaaaaattg |
39562932 |
T |
|
| Q |
100 |
aaatgaaattttacaaattcaagagtttgaagccgtaaaaaattctagttttccaatttgaatttacattttggagccaaggtcccaaaacatgcttcca |
199 |
Q |
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| | ||||| ||||||| || ||||||||||||| | ||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39562933 |
atacgaaatattacaaactcgagagtttgaagccat-taaatttatagttttccaatttgatcttacattttggagccaaggtcccaaaacatgcttcca |
39563031 |
T |
|
| Q |
200 |
agcaaaacagccacggcggttga |
222 |
Q |
| |
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| ||||||||| || |||||||| |
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| T |
39563032 |
aacaaaacagcaactgcggttga |
39563054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 39546027 - 39546120
Alignment:
| Q |
1 |
ctgcactgaattacaattcatgacgccaattaggataacagcagaatacatggaccccatggcattaaaaagatcttgctccttttcactgcaa |
94 |
Q |
| |
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|||||| | ||||| |||| ||| ||||||||||| ||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39546027 |
ctgcacagcattactattcttgatgccaattaggagaacggctgaatacatggaccccatggcattaaaaagatcttgttccttttcactgcaa |
39546120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 1083349 - 1083447
Alignment:
| Q |
16 |
attcatgacgccaattaggataacagcagaatacatggaccccatggcattaaaaagatcttgctccttttcactgcaataa--tgaaatgaaatttta |
112 |
Q |
| |
|
|||| ||| |||||||| | ||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||| |
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| T |
1083349 |
attcttgatgccaattattagaacagcacaatacatggatcccatggcattaaaaagatcttgttccttttcactgcaataatttgatatgaaatttta |
1083447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 39536710 - 39536787
Alignment:
| Q |
1 |
ctgcactgaattacaattcatgacgccaattaggataacagcagaatacatggaccccatggcattaaaaagatcttg |
78 |
Q |
| |
|
|||||||| ||||| |||| ||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
39536710 |
ctgcactgcattaccattcttgattccaattaggagaacagcagaatacattgaccccatggcattaaaaagatcttg |
39536787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 219
Target Start/End: Original strand, 39536866 - 39536943
Alignment:
| Q |
142 |
ttctagttttccaatttgaatttacattttggagccaaggtcccaaaacatgcttccaagcaaaacagccacggcggt |
219 |
Q |
| |
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|||||||||| |||||||| |||||||||||||||||||| |||||||||| ||||||||| |||||| || ||||| |
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| T |
39536866 |
ttctagtttttcaatttgatcttacattttggagccaaggttccaaaacatggttccaagcataacagctaccgcggt |
39536943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 39546182 - 39546261
Alignment:
| Q |
142 |
ttctagttttccaatttgaatttacattttggagccaaggtcccaaaacatgcttccaagcaaaacagccacggcggttga |
222 |
Q |
| |
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||||||||||||||||| | |||||| ||||||||||||| |||||||||| |||||||||||||||| |||| |||||| |
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| T |
39546182 |
ttctagttttccaattt-atcttacatattggagccaaggttccaaaacatggttccaagcaaaacagctacggaggttga |
39546261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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