View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3628_low_49 (Length: 226)
Name: NF3628_low_49
Description: NF3628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3628_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 80 - 218
Target Start/End: Original strand, 9480046 - 9480188
Alignment:
| Q |
80 |
gaatatatggtccaatatttcctacaaa----acgacatcgaaattgtgttttcttcccaatcaagaagaaaattaagagagcaatgataaattgttaca |
175 |
Q |
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| T |
9480046 |
gaatatatggtccaatattgcctacaaattaaacgacatcgaaattgtgttttcttcctaattaagaagaaaattatgagagtaatgataaattattaca |
9480145 |
T |
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| Q |
176 |
tatttgatttgacctccttgtgttttcttcttcccatattctt |
218 |
Q |
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| T |
9480146 |
tatttgatttgacctccttgtgttttcttcttcccattttctt |
9480188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 9480005 - 9480044
Alignment:
| Q |
20 |
atataatactgttatttgtcgtaggtggttaccttgccat |
59 |
Q |
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| T |
9480005 |
atatgatactgttatttgtcgtaggtggttaccttgccat |
9480044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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