View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3628_low_7 (Length: 424)
Name: NF3628_low_7
Description: NF3628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3628_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 17 - 421
Target Start/End: Complemental strand, 3042998 - 3042594
Alignment:
| Q |
17 |
caatcaacgtcaatcaaagtctcaaactcatagagatcatttctgtttttacttagttcatcttctgcacatccttgcatgaagtttggctcgcaagtac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3042998 |
caatcaacgtcaatcaaagtctcaaactcatagagatcatttctgtttttacttagttcatcttctgcacatccttgcatgaagtttggctcgcaagtac |
3042899 |
T |
|
| Q |
117 |
caagtggatcatcggcatcaaccagtgagtaactttttggacactgacatgttggtcacttatcaactcccaaagtgcagaagctattatatccacaaac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3042898 |
caagtggatcatcggcatcaaccagtgagtaactttttggacactgacatgttggtcacttatcaactcccaaagtgcagaagctattatatccacaaac |
3042799 |
T |
|
| Q |
217 |
accactacctgcactgacagtataagtacatatattatcaggcttagaccacacagtggtccaaccttcaccatcaattgaattcttcggatgcttgtaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3042798 |
accactacctgcactgacagtataagtacatatattatcaggcttagaccacacagtggtccaaccttcaccatcaattgaattcttcggatgcttgtaa |
3042699 |
T |
|
| Q |
317 |
actgcgaacacaccatcaaaattaagagttgctctaagataataaagcgtggtagagactttactctcttcttctgacacattgtatttcgtattcatct |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
3042698 |
actgcgaacacaccatcaaaattaagagttgctctaagataataaagcgtggtagagactttactctcttcttctgacacattgtatttcgtattgttct |
3042599 |
T |
|
| Q |
417 |
ctctc |
421 |
Q |
| |
|
||||| |
|
|
| T |
3042598 |
ctctc |
3042594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 406
Target Start/End: Complemental strand, 3034956 - 3034567
Alignment:
| Q |
17 |
caatcaacgtcaatcaaagtctcaaactcatagagatcatttctgtttttacttagttcatcttctgcacatccttgcatgaagtttggctcgcaagtac |
116 |
Q |
| |
|
||||||| |||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||| ||| ||| |
|
|
| T |
3034956 |
caatcaatgtcagtcatagtctcaaactcatagagatcatttctgtttttacttggttcatcttctgcacatccttgtatgaagtctggcttgcagctac |
3034857 |
T |
|
| Q |
117 |
caagtggatcatcggcatcaaccagtgagtaactttttggacactgacatgttggtcacttatcaactcccaaagtgcagaagctattatatccacaaac |
216 |
Q |
| |
|
||| |||||| || | ||||||||| ||||| | |||||||||||||||| | |||| |||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
3034856 |
caaatggatcttcaggatcaaccagcgagtatcgttttggacactgacatttcggtctcttatcaacttccaaagtgcataagctattatatccacaaac |
3034757 |
T |
|
| Q |
217 |
accactacctgcactgacagtataagtacatatattatcaggcttagaccacacagtggtccaaccttcaccatcaattgaattcttcggatgcttgtaa |
316 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3034756 |
accactacctgcactaacaatataagtacatatattatcaggcttagaccacactgtggtccaaccttcaccatcaattgaattcttcggatgcttgtaa |
3034657 |
T |
|
| Q |
317 |
actgcgaacacaccatcaaaattaagagttgctctaagataataaagcgtggtagagactttactctcttcttctgacacattgtatttc |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3034656 |
actgcgaacacaccatcaaaattaagagttgctctaagataataaagagtggtagagactttactctcttgctctgacacattgtatttc |
3034567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 406
Target Start/End: Complemental strand, 3055818 - 3055429
Alignment:
| Q |
17 |
caatcaacgtcaatcaaagtctcaaactcatagagatcatttctgtttttacttagttcatcttctgcacatccttgcatgaagtttggctcgcaagtac |
116 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||| ||| |
|
|
| T |
3055818 |
caatcaatgtcagtcaaagtctcaaactcatagagatcatttctgtttttacttagttcatcttctgcacatccttgtatgaagtctggcttgcagctac |
3055719 |
T |
|
| Q |
117 |
caagtggatcatcggcatcaaccagtgagtaactttttggacactgacatgttggtcacttatcaactcccaaagtgcagaagctattatatccacaaac |
216 |
Q |
| |
|
||||||||||||| | ||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3055718 |
caagtggatcatcaggatcaaccagtgagtatcgttttggacactgacatgttggtctcttatcaactcccaaagtgcagaagctattatatccacaaac |
3055619 |
T |
|
| Q |
217 |
accactacctgcactgacagtataagtacatatattatcaggcttagaccacacagtggtccaaccttcaccatcaattgaattcttcggatgcttgtaa |
316 |
Q |
| |
|
|||||| ||| || | || ||||| |||||||||||||||| ||||||||||| |||||||| | |||| ||| |||||||||| |||| ||||||| |
|
|
| T |
3055618 |
accactcccttcattagcaatataattacatatattatcaggtttagaccacactatggtccaaacatcactctcagttgaattcttgggatacttgtaa |
3055519 |
T |
|
| Q |
317 |
actgcgaacacaccatcaaaattaagagttgctctaagataataaagcgtggtagagactttactctcttcttctgacacattgtatttc |
406 |
Q |
| |
|
| || |||||| |||||||||||||||||||| |||| |||| | |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3055518 |
agtgtgaacactccatcaaaattaagagttgccctaacataaaattcagtggtagagactttactctcttgctctgacacattgtatttc |
3055429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 25 - 406
Target Start/End: Original strand, 3063481 - 3063862
Alignment:
| Q |
25 |
gtcaatcaaagtctcaaactcatagagatcatttctgtttttacttagttcatcttctgcacatccttgcatgaagtttggctcgcaagtaccaagtgga |
124 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||||||||| | ||||||||| |||||||||| | ||| | ||||| ||| | ||| |||| |
|
|
| T |
3063481 |
gtcaatcaaaatctcaaactcatagagatcatttctctttttacttggatcatcttctccacatccttggacgaaatctggcttgcagctgccatatgga |
3063580 |
T |
|
| Q |
125 |
tcatcggcatcaaccagtgagtaactttttggacactgacatgttggtcacttatcaactcccaaagtgcagaagctattatatccacaaacaccactac |
224 |
Q |
| |
|
|||| | ||||| ||||||||| |||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3063581 |
tcattaggatcaatcagtgagtactgttttggacactgacattttggtctcttatcatctcccaaagtgcagaagctattatatccacaaacaccactac |
3063680 |
T |
|
| Q |
225 |
ctgcactgacagtataagtacatatattatcaggcttagaccacacagtggtccaaccttcaccatcaattgaattcttcggatgcttgtaaactgcgaa |
324 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||| || |||||||||||||||| | | ||||| |||| ||||||||||||| || ||| |
|
|
| T |
3063681 |
ctgcactaacagtataagtacatatattaaagggcttagaccatactgtggtccaaccttcactcttagttgaactcttaggatgcttgtaaagtgtgaa |
3063780 |
T |
|
| Q |
325 |
cacaccatcaaaattaagagttgctctaagataataaagcgtggtagagactttactctcttcttctgacacattgtatttc |
406 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| | | ||||| ||||| |||||||||||||| |||||||||||||| |
|
|
| T |
3063781 |
cactccatcaaaattaagagttgctctaagataaaattgtgtggtcgagacgttactctcttcttcgaacacattgtatttc |
3063862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 25125276 - 25125466
Alignment:
| Q |
17 |
caatcaacgtcaatcaaagtctcaaactcatagagatcatttctgtttttacttagttcatcttctgcacatccttgcatgaagtttggctcgcaagtac |
116 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||| |
|
|
| T |
25125276 |
caatcaacggcaatcaaagtctcaaactcatagagatcatttctgtttttacttagttcatcttctccacatccttgcatgaagtcttgctcgcaagtac |
25125375 |
T |
|
| Q |
117 |
caagtggatcatcggcatcaaccagtgagtaactttttggacactgacatgttggtcacttatcaactcccaaagtgcagaagctattata |
207 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
25125376 |
caagtggatcatcgggatcaaccagtgagtaactttttggacactgacatgttggtctcttatcaactcccaaagtgcagaagctattata |
25125466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 63 - 358
Target Start/End: Original strand, 3071194 - 3071489
Alignment:
| Q |
63 |
ttttacttagttcatcttctgcacatccttgcatgaagtttggctcgcaagtaccaagtggatcatcggcatcaaccagtgagtaactttttggacactg |
162 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||| | ||||| ||| ||||| |||||||||| | ||||| ||||||||||| |||||||||| | |
|
|
| T |
3071194 |
ttttactttgttcatcttctgcacatccttgtatgaaatctggcttgcagctaccatgtggatcatcaggatcaagcagtgagtaacgttttggacaccg |
3071293 |
T |
|
| Q |
163 |
acatgttggtcacttatcaactcccaaagtgcagaagctattatatccacaaacaccactacctgcactgacagtataagtacatatattatcaggctta |
262 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||| | ||||||||||||||||||||||||||| ||| ||| |||| ||||||||| | ||| | | |
|
|
| T |
3071294 |
acatgttggtctcttatcatctcccaaagtgcagatggtattatatccacaaacaccactacctgaactaacaatatattgacatatatttttaggatga |
3071393 |
T |
|
| Q |
263 |
gaccacacagtggtccaaccttcaccatcaattgaattcttcggatgcttgtaaactgcgaacacaccatcaaaattaagagttgctctaagataa |
358 |
Q |
| |
|
|||||||| || |||||| | ||| |||| |||| ||||| ||||||||| || || ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3071394 |
gaccacactgtagtccaatttccactatcagttgagttctttggatgcttgaaaggtgaaaacactccatcaaaattaagagttgctctaagataa |
3071489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 67 - 406
Target Start/End: Original strand, 3067559 - 3067898
Alignment:
| Q |
67 |
acttagttcatcttctgcacatccttgcatgaagtttggctcgcaagtaccaagtggatcatcggcatcaaccagtgagtaactttttggacactgacat |
166 |
Q |
| |
|
||||||||||||||||||| |||| || |||| || ||||| ||| |||||| |||||| || | ||| |||||||||||||||||| ||||| ||| | |
|
|
| T |
3067559 |
acttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacgt |
3067658 |
T |
|
| Q |
167 |
gttggtcacttatcaactcccaaagtgcagaagctattatatccacaaacaccactacctgcactgacagtataagtacatatattatcaggcttagacc |
266 |
Q |
| |
|
||||| | ||||| |||||||||||||| ||||||||||||||||||||||||||||| | | |||| ||||||||| ||||||| ||||| |
|
|
| T |
3067659 |
gttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacctaatttaggaaaataatgacatatattttcaggctgagacc |
3067758 |
T |
|
| Q |
267 |
acacagtggtccaaccttcaccatcaattgaattcttcggatgcttgtaaactgcgaacacaccatcaaaattaagagttgctctaagataataaagcgt |
366 |
Q |
| |
|
|||| | ||||||||| ||| |||| ||||| |||| |||||||| || || |||||| |||||||||||||||||||||||||||||| || || |
|
|
| T |
3067759 |
acactatagtccaacctccactatcagttgaactctttggatgcttaagaagtgtgaacactccatcaaaattaagagttgctctaagataaaaattagt |
3067858 |
T |
|
| Q |
367 |
ggtagagactttactctcttcttctgacacattgtatttc |
406 |
Q |
| |
|
|| ||||||||| || ||||| |||||||| ||||||| |
|
|
| T |
3067859 |
agtggagactttaaccttttcttttgacacatagtatttc |
3067898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 63 - 387
Target Start/End: Complemental strand, 3040763 - 3040439
Alignment:
| Q |
63 |
ttttacttagttcatcttctgcacatccttgcatgaagtttggctcgcaagtaccaagtggatcatcggcatcaaccagtgagtaactttttggacactg |
162 |
Q |
| |
|
|||||| |||||||||||||||||||||||| | ||| | ||||| ||| ||||| |||| || | |||||| ||||||||||| | ||||||| | |
|
|
| T |
3040763 |
ttttacatagttcatcttctgcacatccttgtacgaaatctggcttgcagctaccataaggatagtcaggatcaactagtgagtaactatctggacaccg |
3040664 |
T |
|
| Q |
163 |
acatgttggtcacttatcaactcccaaagtgcagaagctattatatccacaaacaccactacctgcactgacagtataagtacatatattatcaggctta |
262 |
Q |
| |
|
| ||| ||||| | ||||| ||||||||||||| | |||||||||||||||||||||||||||| || | ||| |||| ||||||||| ||| | | |
|
|
| T |
3040663 |
aaatgctggtctcgtatcatctcccaaagtgcatatgctattatatccacaaacaccactaccttcagtaacaaaataatgacatatatttcgaggatga |
3040564 |
T |
|
| Q |
263 |
gaccacacagtggtccaaccttcaccatcaattgaattcttcggatgcttgtaaactgcgaacacaccatcaaaattaagagttgctctaagataataaa |
362 |
Q |
| |
|
|||||||| || |||||| | || |||| |||||||||||||||||||| ||| || ||||| ||||||||||||| ||||||||||||||| || |
|
|
| T |
3040563 |
gaccacactgtagtccaatttccaatatcagttgaattcttcggatgcttgaaaagtgaaaacactccatcaaaattaattgttgctctaagataaaaat |
3040464 |
T |
|
| Q |
363 |
gcgtggtagagactttactctcttc |
387 |
Q |
| |
|
|| || ||||||||||||||||| |
|
|
| T |
3040463 |
cagttgtggagactttactctcttc |
3040439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 192 - 406
Target Start/End: Original strand, 3065767 - 3065978
Alignment:
| Q |
192 |
tgcagaagctattatatccacaaacaccactacctgcactgacagtataagtacatatattatcaggcttagaccacacagtggtccaaccttcaccatc |
291 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||| ||| ||| |||| |||| || ||||||| ||||| ||||| || |||||||||||| || |
|
|
| T |
3065767 |
tgcagaagctgttatatccataaacaccactacctaaactaacaatatat-tacacat--tatcaggtttagatcacactatgatccaaccttcactctc |
3065863 |
T |
|
| Q |
292 |
aattgaattcttcggatgcttgtaaactgcgaacacaccatcaaaattaagagttgctctaagataataaagcgtggtagagactttactctcttcttct |
391 |
Q |
| |
|
| | ||| |||| ||||||||||||| || ||||| || ||||||||||||||||||||||| ||| || | ||| | || ||||||||||||| |||| |
|
|
| T |
3065864 |
agtcgaactctttggatgcttgtaaagtgtaaacaccccgtcaaaattaagagttgctctaagttaaaaatgtgtgtttgaaactttactctctttttct |
3065963 |
T |
|
| Q |
392 |
gacacattgtatttc |
406 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
3065964 |
tacacattgtatttc |
3065978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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