View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3628_low_8 (Length: 408)
Name: NF3628_low_8
Description: NF3628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3628_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 259 - 391
Target Start/End: Complemental strand, 45702053 - 45701921
Alignment:
| Q |
259 |
cactcgaaccctaatggtccaaccttcttgttgcaactcttgcacctatttttcttcttcttcatgttctcattgtcaatgagagaaatagcttccacaa |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45702053 |
cactcgaaccctaatggtccaaccttcttgttgcaactcttgcacctatttttcttcttcttcatgttctcattgtcaatgagagaaatagcttccacaa |
45701954 |
T |
|
| Q |
359 |
catcacaaaaatcattaatagggttctttgaag |
391 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
|
|
| T |
45701953 |
catcacaaaaatcattaataggattctttgaag |
45701921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 133 - 260
Target Start/End: Complemental strand, 45702207 - 45702080
Alignment:
| Q |
133 |
tattgactatctttagattcggtgttctaacttatcacccatacataaaggattttgtttatccaatatttggcgaccaatctcctttaaattcactgtg |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45702207 |
tattgactatctttagattcggtgttctaacttatcacccatacataaaggattttgtttatccaatatttggcgaccaatctcctttaaattcactgtg |
45702108 |
T |
|
| Q |
233 |
cagtcatgttcttctgggtatctatgca |
260 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
45702107 |
cagtcatgttcttctgggtatctatgca |
45702080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 45702323 - 45702288
Alignment:
| Q |
17 |
atcataaagaattgaaatgtttaccattcttgttat |
52 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45702323 |
atcataaagaattgaaatgtttacaattcttgttat |
45702288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 286 - 391
Target Start/End: Complemental strand, 47440453 - 47440345
Alignment:
| Q |
286 |
ttgttgcaactcttgcacctatttttcttcttcttcatgttctcattgtcaatgagagaaatagcttccacaacatcacaaaaatcat---taatagggt |
382 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||| ||| |||||||||||||||||||| ||||| ||||||||| ||||| || |||||| |
|
|
| T |
47440453 |
ttgttgcaactcttgcacctagttttcttctccttcatgttatcactgtcaatgagagaaatagctgccacagcatcacaaatatcattgatactagggt |
47440354 |
T |
|
| Q |
383 |
tctttgaag |
391 |
Q |
| |
|
||||||||| |
|
|
| T |
47440353 |
tctttgaag |
47440345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 146 - 260
Target Start/End: Complemental strand, 47440621 - 47440507
Alignment:
| Q |
146 |
tagattcggtgttctaacttatcacccatacataaaggattttgtttatccaatatttggcgaccaatctcctttaaattcactgtgcagtcatgttctt |
245 |
Q |
| |
|
|||||||||| || |||||||||||||||||| |||||||||||||| || |||||||| |||||||||| |||||||| |||| |||| |||||||| |
|
|
| T |
47440621 |
tagattcggtattttaacttatcacccatacacaaaggattttgtttctctaatatttgacgaccaatcttctttaaatccactttgcatgtatgttctt |
47440522 |
T |
|
| Q |
246 |
ctgggtatctatgca |
260 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
47440521 |
ctggatatctatgca |
47440507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University