View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3628_low_9 (Length: 405)
Name: NF3628_low_9
Description: NF3628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3628_low_9 |
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| [»] scaffold0911 (1 HSPs) |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 389
Target Start/End: Complemental strand, 8479888 - 8479514
Alignment:
| Q |
17 |
aaccgaagccaacttcttaattctctctaaa-attcagaaattcattgagaagggggagttgaacccttcgcacgggtgttgtaccaagctttccctaaa |
115 |
Q |
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||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||| |
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| T |
8479888 |
aaccgaagccaacttctcaattctctcttaacattcagaaattcattgagaagggggagttgaacccttcacacgggtgttgtacgaagttttccctaaa |
8479789 |
T |
|
| Q |
116 |
acatgctttttcaatgtttgctgctattttt-agacaaaacatgcgtgaatccttcggctgccatacgttgatcatactcccgaatgcaagcccataaat |
214 |
Q |
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|| |||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
8479788 |
acttgctttttcaatgtttgctgctgttttttagacaaaacttgcgtgaatccttcggctgccatacgttgatcatactcccgaatgcgagcctataaat |
8479689 |
T |
|
| Q |
215 |
ccaagtcattttgaacatttttcaaaacctggatttccttggactgaattgaaacttcacgcacctgatcagcagtaagctcattagttggtgcacttga |
314 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
8479688 |
ccaagtcattttgaacatttttcgaaacctggatttccttggactgaattgaaacttcacgcacctgatcagcagtaagctcattagctgctgcacttga |
8479589 |
T |
|
| Q |
315 |
attcgcttctgtctctgctggtatggattgcacatttgctgaatgttccaatgccataacatctaatgatggctg |
389 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8479588 |
attcgcttctgtctctgctggtctggattgcacatttgctgaatgttccaatgccataacatctaatgatggctg |
8479514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 20 - 389
Target Start/End: Original strand, 19936316 - 19936686
Alignment:
| Q |
20 |
cgaagccaacttcttaattctctctaaaattcagaaattcattgagaagggggagttgaacccttcgcacgggtgttgtaccaagctttccctaaaacat |
119 |
Q |
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|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
19936316 |
cgaagccaacttctcaattctctctaacattcagaaattcattgagaagggggagttgaacccttcgcacgggtgttgtacgaagctttccctaaaactt |
19936415 |
T |
|
| Q |
120 |
gctttttcaatgtttgctgctatttt-tagacaaaacatgcgtgaatccttcggctgccatacgttgatcatactcccgaatgcaagcccataaatccaa |
218 |
Q |
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||||||||||||||||||||| |||| |||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
19936416 |
gctttttcaatgtttgctgctgttttttagacaaaacctgcgtgaatccttcggcggccatacattgatcatactcccgaatgcgagcccataaatccaa |
19936515 |
T |
|
| Q |
219 |
gtcattttgaacatttttcaaaacctggatttccttggactgaattgaaacttcacgcacctgatcagcagtaagctcattagttggtgcacttgaattc |
318 |
Q |
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||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
19936516 |
gtcattttgaacatttttcgaaacctggatttccttggattgaattgaaacttcacgcacctgatcagcagtaagctcattagctgctgcacttgaattc |
19936615 |
T |
|
| Q |
319 |
gcttctgtctctgctggtatggattgcacatttgctgaatgttccaatgccataacatctaatgatggctg |
389 |
Q |
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|||| || |||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
19936616 |
gcttttgcctctgctggtctggattgcacatttgctgactgttccaatgccataacagctaatgatggctg |
19936686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 53 - 388
Target Start/End: Complemental strand, 41068217 - 41067881
Alignment:
| Q |
53 |
gaaattcattgagaagggggagttgaacccttcgcacgggtgttgtaccaagctttccctaaaacatgctttttcaatgtttgctgctattttt-agaca |
151 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||| ||||| |
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| T |
41068217 |
gaaattcattgagaagggggagttgaacccttcgcacgggtgttgtacgaagctttccctaaaacttgctttttcaatgtttgctgctgttttttagaca |
41068118 |
T |
|
| Q |
152 |
aaacatgcgtgaatccttcggctgccatacgttgatcatactcccgaatgcaagcccataaatccaagtcattttgaacatttttcaaaacctggatttc |
251 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
41068117 |
aaacttgcgtgaatccttcggctgccatacgttgatcttactcccgaatgcgagcccataaatccaagtcattttgaacatttttcgaaacctggatttc |
41068018 |
T |
|
| Q |
252 |
cttggactgaattgaaacttcacgcacctgatcagcagtaagctcattagttggtgcacttgaattcgcttctgtctctgctggtatggattgcacattt |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
41068017 |
cttggactgaattgaaacttcacgcacctgatcagcagtaaactcattagctgctgcacttgaattagcttctgtctctgctggtctggattgcacatta |
41067918 |
T |
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| Q |
352 |
gctgaatgttccaatgccataacatctaatgatggct |
388 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
41067917 |
gctgaatgttccaatgccataacatctaatgatggct |
41067881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 53 - 385
Target Start/End: Original strand, 10032981 - 10033314
Alignment:
| Q |
53 |
gaaattcattgagaagggggagttgaacccttcgcacgggtgttgtaccaagctttccctaaaacatgctttttcaatgtttgctgctattttt-agaca |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||| | |
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| T |
10032981 |
gaaattcattgagaagggggagttgaacccttcgcacgggtgttgtacgaagctttccctaaaacatgctttttcaatgtttgctgctgttttttagata |
10033080 |
T |
|
| Q |
152 |
aaacatgcgtgaatccttcggctgccatacgttgatcatactcccgaatgcaagcccataaatccaagtcattttgaacatttttcaaaacctggatttc |
251 |
Q |
| |
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|||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
10033081 |
aaacttgcgtgaatccttcgcttgccatacgttgatcatactcccgaatgtgagcccataaatccaagtcattttgcacatttttcaaaacctggatttc |
10033180 |
T |
|
| Q |
252 |
cttggactgaattgaaacttcacgcacctgatcagcagtaagctcattagttggtgcacttgaattcgcttctgtctctgctggtatggattgcacattt |
351 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||| ||| |||| || | |||||||||||||| |
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| T |
10033181 |
cctggactgaattgaaacttcacgcacctgatcagcagtaagctcattagctgctgttcttgaattcgcttatgtttctgttgatctggattgcacattt |
10033280 |
T |
|
| Q |
352 |
gctgaatgttccaatgccataacatctaatgatg |
385 |
Q |
| |
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| |||||||||||||||||||||||||||||||| |
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| T |
10033281 |
gttgaatgttccaatgccataacatctaatgatg |
10033314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0911 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0911
Description:
Target: scaffold0911; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 79 - 236
Target Start/End: Original strand, 2776 - 2934
Alignment:
| Q |
79 |
acccttcgcacgggtgttgtaccaagctttccctaaaacatgctttttcaatgtttgctgctattt-ttagacaaaacatgcgtgaatccttcggctgcc |
177 |
Q |
| |
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|||||| |||||||| || ||| ||||||| || | ||| ||||||||||||||||| |||| || || || || || |||||||| ||||| | |||| |
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| T |
2776 |
accctttgcacgggttttatacgaagctttacccagaacttgctttttcaatgtttgttgctgcttcttggataacacttgcgtgaagccttctgttgcc |
2875 |
T |
|
| Q |
178 |
atacgttgatcatactcccgaatgcaagcccataaatccaagtcattttgaacattttt |
236 |
Q |
| |
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|| |||||||||||||| ||||||| |||||||||||||||||||||||| |||||||| |
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|
| T |
2876 |
atccgttgatcatactcgcgaatgcgagcccataaatccaagtcattttgtacattttt |
2934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 310 - 249
Alignment:
| Q |
79 |
acccttcgcacgggtgttgtaccaagctttccctaaaacatgctttttcaatgtttgctgct |
140 |
Q |
| |
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|||||| ||||||||||| ||| ||||||| || | ||| ||||||||||||||||| |||| |
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|
| T |
310 |
accctttgcacgggtgttatacgaagctttacccataacttgctttttcaatgtttgttgct |
249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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