View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3629_high_1 (Length: 1038)
Name: NF3629_high_1
Description: NF3629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3629_high_1 |
 | |
|
| [»] scaffold0590 (1 HSPs) |
| | |
|
| [»] scaffold0275 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 917; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 917; E-Value: 0
Query Start/End: Original strand, 90 - 1022
Target Start/End: Original strand, 47427521 - 47428453
Alignment:
| Q |
90 |
tataagctattttagaaaatttgtggaaataagatggaaacatcttatgtagatgtcataaacggtttccgtaaattttgccaaatagtctcacaactca |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47427521 |
tataagctattttagaaaatttgtggaaataagatggaaacatcttatgtagatgtcataaacggtttccgtaaattttgccaaatagtctcacaactca |
47427620 |
T |
|
| Q |
190 |
catgtgtttacttctatagctaagttcaaataaattaatccaaacaaaccttaaaccgattccagttacaaaacatgtaactggaaattagccaaaaact |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47427621 |
catgtgtttacttctatagctaagttcaaataaattaatccaaacaaaccttaaaccgattccagttacaaaacatgtaactggaaattagccaaaaact |
47427720 |
T |
|
| Q |
290 |
ttgttagaatgaattttcaataggatggattgacatccaaattgaatactggttatattacataatcttctttgttcaaatatttggaaagtttctgcag |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47427721 |
ttgttagaatgaattttcaataggatggattgacatccaaattgaatactggttatattacataatcttctttgttcaaatatttggaaagtttctgcag |
47427820 |
T |
|
| Q |
390 |
aggcttacttgattttgttgtatcatttgacctttgaaggagggaatttctgtgtgttttggaggttgtatttcgaggggatttacttcttctgccatct |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47427821 |
aggcttacttgattttgttgtatcatttgacctttgaaggagggaatttctgtgtgttttggaggttgtatttcgaggggatttacttcttctgccatct |
47427920 |
T |
|
| Q |
490 |
taatccttttaattcgtgctctaacttgtatcgacatcaatgcatgcattccgcgtagtgttgcagttgtttgtttccttacaaggtgacccctcactag |
589 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47427921 |
taatccttttaattcgtgctctaacttgtatcgacatcaatgcatgcattccacgtagtgttgcagttgtttgtttccttacaaggtgacccctcactag |
47428020 |
T |
|
| Q |
590 |
tgcctgtaacttcaccaatccctttaaagcatgcaatgctctccttgcctgcaaattttgtatgtatgttatagcataaactttgtatcacatacacttg |
689 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47428021 |
tgcctgtaacttcaccaatccctttaaagcatgcaatgctctccttgcctgcaaattttgtatgtatgttatagcataaactttgtatcacatacacttg |
47428120 |
T |
|
| Q |
690 |
agatcgagaagacatgtccggtgtgtgacaccaacacatgcgatcacattttttaaaatgtaatgaaatatagagagaagtttataccaagtaggagcga |
789 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47428121 |
agatcgagaagacatgtccggtgtgtgacaccaacacatgcgatcacattttttaaaatgtaatgaaatatagagagaagtttataccaagtaggagcga |
47428220 |
T |
|
| Q |
790 |
aaggaagcttgaatcttcgtagcagcttttttcacaaattcagaagctgttggacgaaaccttggggactgagtatagaacaggccttgtatttgtaatt |
889 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47428221 |
aaggaagcttgaatctttgtagcagcttttttcacaaattcagcagctgttggacgaaaccttggggactgagtatagaacaggccttgtatttgtaatt |
47428320 |
T |
|
| Q |
890 |
ttggagagtcatctgaatcaaaagacttggaaattttatgagctactaacttgcccgttgatcttccacttgttagttttcggaagctccatctgcgctt |
989 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47428321 |
ttggagagtcatctgaatcaaaagacttggaaattttatgagctactaccttgcccgttgatcttccacttgttagttttcggaagctccatctgcgctt |
47428420 |
T |
|
| Q |
990 |
cactaccatcttattactattactgctgctact |
1022 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
47428421 |
cactaccatcttattactattactgctgctact |
47428453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 47427472 - 47427530
Alignment:
| Q |
21 |
tataagtgattcctataacaaaagacaaaataaagtaaaagtattctcatataagctat |
79 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47427472 |
tataagttaatcctataacaaaagacaaaataaagtaaaagtattctcatataagctat |
47427530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 5006627 - 5006558
Alignment:
| Q |
29 |
attcctataacaaaagacaaaataaagtaaaagtattctcatataagctatagattatttttataagcta |
98 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| | || ||||||||| |||| ||| |||| |||||||| |
|
|
| T |
5006627 |
attcctataacaaaagataaaataaagtcaaactgttttcatataaggtataaattgttttcataagcta |
5006558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 151
Target Start/End: Complemental strand, 44151592 - 44151476
Alignment:
| Q |
35 |
ataacaaaagacaaaataaagtaaaagtattctcatataagctatagattatttttataagctattttagaaaatttgtggaaataagatggaaacatct |
134 |
Q |
| |
|
||||||||||| | |||||||||||| | || ||||||||||||| || |||| |||| |||| || ||| || |||||||||| || |||||||| |
|
|
| T |
44151592 |
ataacaaaagatagaataaagtaaaactgtttccatataagctataagttgttttcataaactatcttgaaaagcttatggaaataagctgaaaacatct |
44151493 |
T |
|
| Q |
135 |
tatgtagatgtcataaa |
151 |
Q |
| |
|
|||| | |||||||||| |
|
|
| T |
44151492 |
tatggacatgtcataaa |
44151476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 99
Target Start/End: Original strand, 1402952 - 1403018
Alignment:
| Q |
33 |
ctataacaaaagacaaaataaagtaaaagtattctcatataagctatagattatttttataagctat |
99 |
Q |
| |
|
||||||||||||| |||||||||| ||| |||| |||||||||||||| ||| |||| ||||||||| |
|
|
| T |
1402952 |
ctataacaaaagataaaataaagttaaactattttcatataagctataaattgttttcataagctat |
1403018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 37689497 - 37689429
Alignment:
| Q |
34 |
tataacaaaagacaaaataaagtaaaagtattctcatataagctatagattatttttataagctatttt |
102 |
Q |
| |
|
|||||||||||| ||| |||||| ||| |||| |||||||||||||| | |||||| |||||||||||| |
|
|
| T |
37689497 |
tataacaaaagataaagtaaagttaaattattttcatataagctataaactattttcataagctatttt |
37689429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 185
Target Start/End: Complemental strand, 36646496 - 36646344
Alignment:
| Q |
33 |
ctataacaaaagacaaaataaagtaaaagtattctcatataagctatagattatttttataagctattttagaaaatttgtggaaataagatggaaacat |
132 |
Q |
| |
|
|||| |||||||| ||||||||||| || | || ||||||||| |||| || |||| ||||||||| |||| | ||| | ||||||||||| ||||| |
|
|
| T |
36646496 |
ctatgacaaaagataaaataaagtataattgttttcatataagttataacttgttttcataagctatcctagagagtttatagaaataagatgaaaacag |
36646397 |
T |
|
| Q |
133 |
cttatgtagatgtcataaacggtttccgtaaattttgccaaatagtctcacaa |
185 |
Q |
| |
|
|||||| | ||| ||||| ||||||| ||| | | ||||||||||| |||| |
|
|
| T |
36646396 |
cttatggacatgccataagtggtttccataagctctcccaaatagtcttacaa |
36646344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 1395627 - 1395673
Alignment:
| Q |
33 |
ctataacaaaagacaaaataaagtaaaagtattctcatataagctat |
79 |
Q |
| |
|
||||||||||||| |||||||||| ||| |||| ||||||||||||| |
|
|
| T |
1395627 |
ctataacaaaagataaaataaagtcaaattattttcatataagctat |
1395673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 152
Target Start/End: Complemental strand, 40122864 - 40122748
Alignment:
| Q |
35 |
ataacaaaagacaaaataaagtaaaagtattctcatataagctatagattatttttataagctattttagaaaatttgtggaaataagatggaaacatct |
134 |
Q |
| |
|
||||||||||| |||||||||| ||| | || ||||| |||||||| || |||||||||||||| || ||| || |||||||||| | ||||| || |
|
|
| T |
40122864 |
ataacaaaagataaaataaagtcaaactgttttcata-aagctataagttgtttttataagctatcctaaaaagttaatggaaataagctaaaaacaact |
40122766 |
T |
|
| Q |
135 |
tatgtagatgtcataaac |
152 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
40122765 |
tatagagatgtcataaac |
40122748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 144
Target Start/End: Original strand, 49219083 - 49219206
Alignment:
| Q |
21 |
tataagtgattcctataacaaaagacaaaataaagtaaaagtattctcatataagctatagattatttttataagctattttagaaaatttgtggaaata |
120 |
Q |
| |
|
||||||| ||| ||||||||||| | |||||||||| ||| |||| |||||||||||||| || |||| |||| |||| ||| | | || |||||||| |
|
|
| T |
49219083 |
tataagttatttctataacaaaatataaaataaagtcaaattattttcatataagctataagttgttttcataaactatcttaaagagattatggaaata |
49219182 |
T |
|
| Q |
121 |
agatggaaacatcttatgtagatg |
144 |
Q |
| |
|
|| || ||||| |||||| ||||| |
|
|
| T |
49219183 |
agctgaaaacaacttatggagatg |
49219206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 30024645 - 30024703
Alignment:
| Q |
22 |
ataagtgattcctataacaaaagacaaaataaagtaaaagtattctcatataagctata |
80 |
Q |
| |
|
|||||| ||| ||||||||||||| |||||||||||||| | || |||||||||||||| |
|
|
| T |
30024645 |
ataagttatttctataacaaaagataaaataaagtaaaattgttttcatataagctata |
30024703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 4071838 - 4071885
Alignment:
| Q |
33 |
ctataacaaaagacaaaataaagtaaaagtattctcatataagctata |
80 |
Q |
| |
|
||||||||||||| |||||||||| ||| |||| |||||||||||||| |
|
|
| T |
4071838 |
ctataacaaaagataaaataaagtcaaattattttcatataagctata |
4071885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 45128424 - 45128363
Alignment:
| Q |
33 |
ctataacaaaagacaaaataaagtaaaagtattctcatataagctatagattatttttataa |
94 |
Q |
| |
|
||||||||||||| ||||| || | ||| ||||||||||||||||||| ||| |||| |||| |
|
|
| T |
45128424 |
ctataacaaaagataaaatcaaatcaaattattctcatataagctataaattgttttcataa |
45128363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 18962151 - 18962086
Alignment:
| Q |
34 |
tataacaaaagacaaaataaagtaaaagtattctcatataagctatagattatttttataagctat |
99 |
Q |
| |
|
|||||||||||| |||||||||| ||| | || |||||||||||||| | |||||| ||||||||| |
|
|
| T |
18962151 |
tataacaaaagataaaataaagttaaactgttttcatataagctataaactattttcataagctat |
18962086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 37292457 - 37292415
Alignment:
| Q |
37 |
aacaaaagacaaaataaagtaaaagtattctcatataagctat |
79 |
Q |
| |
|
||||||||| |||||||||||||| |||| ||||||||||||| |
|
|
| T |
37292457 |
aacaaaagataaaataaagtaaaactattttcatataagctat |
37292415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 17952815 - 17952770
Alignment:
| Q |
33 |
ctataacaaaagacaaaataaagtaaaagtattctcatataagcta |
78 |
Q |
| |
|
||||||||||||| |||||||||| ||| |||| |||||||||||| |
|
|
| T |
17952815 |
ctataacaaaagataaaataaagtcaaactattttcatataagcta |
17952770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 39128595 - 39128659
Alignment:
| Q |
33 |
ctataacaaaagacaaaataaagtaaaagtattctcatataagctatagattatttttataagct |
97 |
Q |
| |
|
||||||||||||| |||||||||| ||| | |||||| |||| ||||| | |||||||||||||| |
|
|
| T |
39128595 |
ctataacaaaagataaaataaagtcaaattgttctcaaataaactataaactatttttataagct |
39128659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 35135776 - 35135729
Alignment:
| Q |
33 |
ctataacaaaagacaaaataaagtaaaagtattctcatataagctata |
80 |
Q |
| |
|
||||||||||||| |||||||||| ||| |||| |||||||||||||| |
|
|
| T |
35135776 |
ctataacaaaagataaaataaagtcaaactattttcatataagctata |
35135729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0590 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0590
Description:
Target: scaffold0590; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 1188 - 1145
Alignment:
| Q |
33 |
ctataacaaaagacaaaataaagtaaaagtattctcatataagc |
76 |
Q |
| |
|
||||||||||||| |||||||||| ||| ||||||||||||||| |
|
|
| T |
1188 |
ctataacaaaagataaaataaagtcaaactattctcatataagc |
1145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0275 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0275
Description:
Target: scaffold0275; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 2787 - 2830
Alignment:
| Q |
33 |
ctataacaaaagacaaaataaagtaaaagtattctcatataagc |
76 |
Q |
| |
|
||||||||||||| |||||||||| ||| ||||||||||||||| |
|
|
| T |
2787 |
ctataacaaaagataaaataaagtcaaactattctcatataagc |
2830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 48830202 - 48830123
Alignment:
| Q |
21 |
tataagtgattcctataacaaaagacaaaataaagtaaaagtattctcatataagctatagattatttttataagctatt |
100 |
Q |
| |
|
||||||| ||| |||| || ||||| |||||||||| ||| |||| |||||||||||||| | | |||| |||||||||| |
|
|
| T |
48830202 |
tataagttatttctattaccaaagataaaataaagtcaaactattttcatataagctataaactgttttcataagctatt |
48830123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 29007840 - 29007783
Alignment:
| Q |
23 |
taagtgattcctataacaaaagacaaaataaagtaaaagtattctcatataagctata |
80 |
Q |
| |
|
||||| ||| ||||||||||||| ||| |||||| ||| |||| |||||||||||||| |
|
|
| T |
29007840 |
taagttatttctataacaaaagaaaaattaaagtcaaactattttcatataagctata |
29007783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 138
Target Start/End: Complemental strand, 28769457 - 28769348
Alignment:
| Q |
29 |
attcctataacaaaagacaaaataaagtaaaagtattctcatataagctatagattatttttataagctattttagaaaatttgtggaaataagatggaa |
128 |
Q |
| |
|
|||||||||||||| | ||||| |||| ||| |||| || ||||||||||| | |||| |||||||||||| || | ||| |||||||||| || || |
|
|
| T |
28769457 |
attcctataacaaactataaaattaagtcaaactattttcttataagctataagctgttttcataagctattttggagagtttatggaaataagctgaaa |
28769358 |
T |
|
| Q |
129 |
acatcttatg |
138 |
Q |
| |
|
||| |||||| |
|
|
| T |
28769357 |
acaacttatg |
28769348 |
T |
|
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