View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3629_high_14 (Length: 386)
Name: NF3629_high_14
Description: NF3629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3629_high_14 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 9 - 386
Target Start/End: Original strand, 42154632 - 42154990
Alignment:
| Q |
9 |
agcagagaaatagtggagaaacaaggta-tcctattccctttcaatcttcaagaatttcctttagtcaattttgttattagtgatgcataatagtactat |
107 |
Q |
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| T |
42154632 |
agcagagaaatagtggagaaacaaggtaatcctattccctttcaatcttcaagaatttcctttagtcaattttgttattag------------------- |
42154712 |
T |
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| Q |
108 |
agtaattacaaataagtaatcacctatataaggtattaattaatcttctgagtatggttataaattataatggactagtaaagattgacaccatttcata |
207 |
Q |
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| T |
42154713 |
--taattacaaataagtaatcacctatataaggtattaattaatcttctgagtatggttataaattataatgggctagaaaagattgacaccatt-cata |
42154809 |
T |
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| Q |
208 |
tttttggtta-taaa--ttacaaaagaagaaaatttgtgcaccttgaattgactatgatatttagacaagaccaattgaattgctaaagatagaaaaata |
304 |
Q |
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| T |
42154810 |
tttttggtttgtgaacttttaaaaagaagaaaatttgtgcaccttgaattgactatgatatttagacaagaccaattgaattgctaaagatagaaaaata |
42154909 |
T |
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| Q |
305 |
ccaagtatcgagtaattataaaggtattgtaatttatctcataaatagagcttggaagaatcaaatactctagcataccttt |
386 |
Q |
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| T |
42154910 |
ctaagtatcaagtaattataaaggtattgtaatttatctcataaatagagcttggaag-atcaaatactctagcataccttt |
42154990 |
T |
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