View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3629_high_18 (Length: 353)
Name: NF3629_high_18
Description: NF3629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3629_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 17 - 337
Target Start/End: Original strand, 42154968 - 42155288
Alignment:
| Q |
17 |
atcaaatactctagcataccttttctattcttatcagttcaaagagtttacttttgtgacagacaagaatcttgtgcttgcaatctttccaatctaattt |
116 |
Q |
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| T |
42154968 |
atcaaatactctagcataccttttctattcttatctgttcaaggagtttacttttgtgacagacaagaatcttgtgcttgcaatctttccaatctaattt |
42155067 |
T |
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| Q |
117 |
agaataaatcatgtgaaaaatgaaaagcctaagatggaagtattaccaactttttcttttgaaaagttagtgccaacaaaagaaacattaatacttggca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42155068 |
agaataaatcatgtgaaaaatgaaaagcctaagatggaagtattaccaactttttcttttgaaaagttagtgccaacaaaagaaacattaatacttggca |
42155167 |
T |
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| Q |
217 |
ccaaattgggattaaaaaataaattgtgaaacctgtttgtgtgttacaagttaaattagagaacaagttatatttatagttgtgcaattgtgttagaaca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42155168 |
ccaaattgggattaaaaaataaattgtgaaacctgtttgtgtgttacaagttaaattagagaacaagttatatttatagttgtgcaattgtgttagaaca |
42155267 |
T |
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| Q |
317 |
gcgaacacacgatatttgatc |
337 |
Q |
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||||||||||||||||||||| |
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| T |
42155268 |
gcgaacacacgatatttgatc |
42155288 |
T |
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