View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3629_high_21 (Length: 326)
Name: NF3629_high_21
Description: NF3629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3629_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 17 - 317
Target Start/End: Original strand, 31902388 - 31902689
Alignment:
| Q |
17 |
gcatcaacatgttagtctcgctctctgttatttaagaaatggagagtaatcttaactcatctaaaggacaatatataggcaaagagtgtgaaccctgtac |
116 |
Q |
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| T |
31902388 |
gcatcaacatcttagtctcgctctctgttatttaagaaatggagagtaatctcaactcatctaaaggacaatatatcggcaaagagtgtgaaccctatac |
31902487 |
T |
|
| Q |
117 |
acttgaaaaagatcatagacaacgaaagacaagtatgagcaaataaatttaggaagcaatatcgacaaagagtccaaacattagacacaaaaaataatca |
216 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
31902488 |
acttggaaaagatcatagacaacgaaagacaagtatgagcaaataaatttaggaagcaatatcgacaaagagtccgaacattagacacaaaaaat-atca |
31902586 |
T |
|
| Q |
217 |
taagcatcaaaatgcatacgagacag--agcctagggggtaatatcaacagagtctgaaccataggcgccaaaaaactaaccatggacatcaaaatgcct |
314 |
Q |
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|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
31902587 |
taagcatcaaaatgcatacgagacagaaagcctagggagtaatatcaacagagtctgaaccataggcactaaaaaactaaccatggacatcaaaatgcct |
31902686 |
T |
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| Q |
315 |
atg |
317 |
Q |
| |
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||| |
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| T |
31902687 |
atg |
31902689 |
T |
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