View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3629_high_23 (Length: 298)
Name: NF3629_high_23
Description: NF3629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3629_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 14 - 283
Target Start/End: Complemental strand, 41875727 - 41875459
Alignment:
| Q |
14 |
agaagaaggtataaatatagcaccgttttctcgtcataatttatttgcaacttcttcccttgaccgtatgttgggctcagaaaacttaaccttgccatcg |
113 |
Q |
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| T |
41875727 |
agaagaaggtataaatatagcaccggtttcttgtcgtaatatatacgcaacttcatctcttgaccttatgttggcctcagaaaagttaaccttaccatca |
41875628 |
T |
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| Q |
114 |
tacctcttaacattctcaagtttacaaaatgacacatttttcggagtaacaatgtatgcagggattccccttagtttttctgccaaagccaattcagcag |
213 |
Q |
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| T |
41875627 |
tacctcttaacattctcaagtttacaaattggcacattttttggagtaacaacgtatgcagggattccccttagttttgctgccaaagccaatgcagcag |
41875528 |
T |
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| Q |
214 |
catggtttccactgatttcagagaacaacatcagaagagaaataaattaactgaatcagttttgaaaaaa |
283 |
Q |
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| T |
41875527 |
catgatttccactgatttcagagaacaacattagaagag-aataaattaactgaatcagatttgaaaaaa |
41875459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 114 - 251
Target Start/End: Original strand, 40868596 - 40868733
Alignment:
| Q |
114 |
tacctcttaacattctcaagtttacaaaatgacacatttttcggagtaacaatgtatgcagggattccccttagtttttctgccaaagccaattcagcag |
213 |
Q |
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| T |
40868596 |
taccgcttcacattctcaattttacatgttggcgcatttttaggaataacaatgtatgcagggatcccccgtagttttgctgccagagccaatgcagcag |
40868695 |
T |
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| Q |
214 |
catggtttccactgatttcagagaacaacatcagaaga |
251 |
Q |
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| T |
40868696 |
catggtttccactgatttcagagaacaacgtcagaaga |
40868733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 230
Target Start/End: Original strand, 24818054 - 24818185
Alignment:
| Q |
99 |
ttaaccttgccatcgtacctcttaacattctcaagtttacaaaatgacacatttttcggagtaacaatgtatgcagggattccccttagtttttctgcca |
198 |
Q |
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||||| || |||||||||||||||| ||| |||| ||||||| ||| || |||||||| ||||| |||||||||| ||||||| ||| |||||| |
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| T |
24818054 |
ttaacgtttccatcgtacctcttaatattttcaactttacaagatggtgcacttttcggaaccacaataaatgcagggatcccccttatctttgctgcca |
24818153 |
T |
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| Q |
199 |
aagccaattcagcagcatggtttccactgatt |
230 |
Q |
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| T |
24818154 |
aagataatgcagcagcatggttcccactgatt |
24818185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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