View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3629_high_24 (Length: 256)
Name: NF3629_high_24
Description: NF3629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3629_high_24 |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 6288643 - 6288403
Alignment:
| Q |
1 |
taagacaagaaaatgagcaaacattttattatttttgtctatgttacacttgaagaaattgtggatagtttacccgtcaatctattaaagttagccatat |
100 |
Q |
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| T |
6288643 |
taagacaagaaaatgagcaaacattttattatttttgtctatgttacacttgaagaaattgtggatagtttacccatcaatctattaaagttagccatat |
6288544 |
T |
|
| Q |
101 |
tcaaagcctcacatccataagaattccagattcaaaagaaggagcatcaataaacacaacaggataagggtctttgacatcttgatcagctttcaaaatc |
200 |
Q |
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| T |
6288543 |
tcaaagcctcacatccataagaattccagattcaaaagaaggagcatcaataagcacatcaggataagggtctttgacatcttgatcagctttcaaaatc |
6288444 |
T |
|
| Q |
201 |
acactcaaacgtgatccaccatctttggaattagaattctg |
241 |
Q |
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| T |
6288443 |
acattcaaacgtgatccaccatctttggaattagaattctg |
6288403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 99 - 233
Target Start/End: Original strand, 6869200 - 6869334
Alignment:
| Q |
99 |
attcaaagcctcacatccataagaattccagattcaaaagaaggagcatcaataaacacaacaggataagggtctttgacatcttgatcagctttcaaaa |
198 |
Q |
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|||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||| ||||| ||||||||||||| |
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| T |
6869200 |
attcaaagactcacattcataagaattccagattcaaaagaaggagcatcaacaaacacaaccggataagggtcttggacttcttgttcagctttcaaaa |
6869299 |
T |
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| Q |
199 |
tcacactcaaacgtgatccaccatctttggaatta |
233 |
Q |
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||| |||||||||||||||||||||||||||||| |
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| T |
6869300 |
tcaatctcaaacgtgatccaccatctttggaatta |
6869334 |
T |
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