View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3629_high_26 (Length: 250)
Name: NF3629_high_26
Description: NF3629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3629_high_26 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 30622617 - 30622388
Alignment:
| Q |
1 |
tagcatgttgaccaaagtcatagagtcatttgaaaaatgatagaaagatgatggtttaaatggtcaaaaattaacatgttgaccaaagtcatttcagtga |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30622617 |
tagcatgttgaccaaagtcataaagtcatttggaaaatgatagaaagatgatggtttaaatggtcaaaaattaacatgttgaccaaag-----tcagtga |
30622523 |
T |
|
| Q |
101 |
caaatattttaataatagaaagatggtggtttaaatggtcaaatattataatg-ttttacacctttacccataattatatttttggaaaatttcttttcc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
30622522 |
caaatattttaataatagaaagatggtggtttaaatggtcaaatagtataatgtttttacacctttacccataattatatttttggaaaatttctttttc |
30622423 |
T |
|
| Q |
200 |
atgtaagaagttgcttaaaaacacatgaaaatatc |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
|
|
| T |
30622422 |
atgtaagaagttgcttaaaaacacatgaaattatc |
30622388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 231
Target Start/End: Complemental strand, 42282653 - 42282625
Alignment:
| Q |
203 |
taagaagttgcttaaaaacacatgaaaat |
231 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
42282653 |
taagaagttgcttaaaaacacatgaaaat |
42282625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University