View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3629_high_28 (Length: 249)

Name: NF3629_high_28
Description: NF3629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3629_high_28
NF3629_high_28
[»] chr8 (12 HSPs)
chr8 (1-214)||(34336563-34336780)
chr8 (8-51)||(44042503-44042546)
chr8 (1-56)||(44254217-44254272)
chr8 (7-49)||(37231434-37231476)
chr8 (12-56)||(25279890-25279934)
chr8 (8-51)||(7262119-7262162)
chr8 (11-50)||(20142539-20142578)
chr8 (12-58)||(31264956-31265002)
chr8 (1-47)||(33649978-33650024)
chr8 (12-49)||(37426387-37426424)
chr8 (13-49)||(5694245-5694281)
chr8 (2-50)||(39312253-39312301)
[»] chr7 (9 HSPs)
chr7 (8-50)||(15034895-15034937)
chr7 (1-50)||(17883403-17883452)
chr7 (8-52)||(6388050-6388094)
chr7 (6-50)||(20397574-20397618)
chr7 (8-52)||(27076228-27076272)
chr7 (8-52)||(27202029-27202073)
chr7 (11-50)||(44319955-44319994)
chr7 (12-49)||(17157871-17157908)
chr7 (12-61)||(28663239-28663287)
[»] scaffold0182 (1 HSPs)
scaffold0182 (7-50)||(19657-19700)
[»] chr2 (13 HSPs)
chr2 (8-50)||(43745591-43745633)
chr2 (8-52)||(12133497-12133541)
chr2 (7-50)||(5403505-5403548)
chr2 (7-58)||(16571977-16572028)
chr2 (9-52)||(20064876-20064919)
chr2 (8-54)||(15120144-15120190)
chr2 (1-55)||(32493162-32493216)
chr2 (7-52)||(18053113-18053158)
chr2 (9-50)||(24762812-24762853)
chr2 (7-56)||(33617892-33617941)
chr2 (8-44)||(433607-433643)
chr2 (12-52)||(3882581-3882621)
chr2 (8-48)||(20683094-20683134)
[»] chr6 (3 HSPs)
chr6 (8-57)||(29407963-29408012)
chr6 (21-61)||(343066-343106)
chr6 (10-50)||(35229259-35229299)
[»] chr5 (7 HSPs)
chr5 (1-50)||(591314-591363)
chr5 (77-162)||(6599137-6599222)
chr5 (1-48)||(30327580-30327627)
chr5 (12-52)||(2112510-2112549)
chr5 (32-60)||(9276700-9276728)
chr5 (13-49)||(17436989-17437025)
chr5 (12-52)||(25437976-25438016)
[»] chr1 (7 HSPs)
chr1 (1-49)||(45925460-45925508)
chr1 (8-52)||(49003613-49003657)
chr1 (8-50)||(43492226-43492268)
chr1 (2-50)||(13792088-13792136)
chr1 (8-50)||(40377009-40377051)
chr1 (7-44)||(11411063-11411100)
chr1 (8-52)||(25302037-25302081)
[»] chr4 (8 HSPs)
chr4 (8-50)||(46521471-46521513)
chr4 (8-49)||(28695734-28695775)
chr4 (12-48)||(24175499-24175535)
chr4 (1-52)||(23135523-23135574)
chr4 (1-48)||(30161464-30161511)
chr4 (1-55)||(5047166-5047220)
chr4 (11-47)||(31655473-31655509)
chr4 (13-53)||(36702763-36702803)
[»] chr3 (5 HSPs)
chr3 (1-47)||(11465715-11465761)
chr3 (17-52)||(32606498-32606533)
chr3 (6-56)||(28434472-28434522)
chr3 (9-50)||(7278263-7278304)
chr3 (8-44)||(32734654-32734690)


Alignment Details
Target: chr8 (Bit Score: 149; Significance: 8e-79; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 34336563 - 34336780
Alignment:
Q  1 tattaaaaatccttaaagagtgtcctaagggcactcgttaacaagaccctaatttaaaatactagaagaaacttgcag------tttttcaagttagtta 94  Q
    |||||| ||||||||||||||| | |||||||| ||||||||||||||||| || |||||||||||||||||||||||      ||||||||||||||||    
T  34336563 tattaagaatccttaaagagtg-cataagggcaatcgttaacaagaccctagtt-aaaatactagaagaaacttgcaggggaagtttttcaagttagtta 34336660  T
Q  95 gaaatcatttgacattcatgcgccataggtgttagtttatgtatttttctataaataatagaatcaaactccatgttaaggagtatatttttgttctgta 194  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  34336661 gaaaacatttgacattcatgcgccatagatgttagtttatgtatttttctataattaatagaatcaaactccatgttaaggagtacatttttgttctgta 34336760  T
Q  195 aatgcccactaataacacat 214  Q
    ||||||||||||||||||||    
T  34336761 aatgcccactaataacacat 34336780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 44042546 - 44042503
Alignment:
Q  8 aatccttaaagagtgtcctaagggcactcgttaacaagacccta 51  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||    
T  44042546 aatccttaaagagtgtccttagggcactcgttaacaaaacccta 44042503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 44254217 - 44254272
Alignment:
Q  1 tattaaaaatccttaaagagtgtcctaagggcactcgttaacaagaccctaattta 56  Q
    ||||| |||||||||||||||| ||| ||| ||||||||||||||||||| |||||    
T  44254217 tattagaaatccttaaagagtgcccttaggacactcgttaacaagacccttattta 44254272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 37231434 - 37231476
Alignment:
Q  7 aaatccttaaagagtgtcctaagggcactcgttaacaagaccc 49  Q
    ||||| |||||||||| ||||||||||||||||||||||||||    
T  37231434 aaatctttaaagagtgccctaagggcactcgttaacaagaccc 37231476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 25279934 - 25279890
Alignment:
Q  12 cttaaagagtgtcctaagggcactcgttaacaagaccctaattta 56  Q
    ||||||||||||| || ||||||||||||||||||| ||||||||    
T  25279934 cttaaagagtgtcgtaggggcactcgttaacaagactctaattta 25279890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 7262119 - 7262162
Alignment:
Q  8 aatccttaaagagtgtcctaagggcactcgttaacaagacccta 51  Q
    ||||||||||||||| |||  |||||||||||||||||||||||    
T  7262119 aatccttaaagagtgccctgggggcactcgttaacaagacccta 7262162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 20142539 - 20142578
Alignment:
Q  11 ccttaaagagtgtcctaagggcactcgttaacaagaccct 50  Q
    |||||||||||||||| ||| |||||||||||||||||||    
T  20142539 ccttaaagagtgtccttaggacactcgttaacaagaccct 20142578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 31265002 - 31264956
Alignment:
Q  12 cttaaagagtgtcctaagggcactcgttaacaagaccctaatttaaa 58  Q
    ||||||||||| |  | ||||||||||||||||||||||||||||||    
T  31265002 cttaaagagtgccacaggggcactcgttaacaagaccctaatttaaa 31264956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 33650024 - 33649978
Alignment:
Q  1 tattaaaaatccttaaagagtgtcctaagggcactcgttaacaagac 47  Q
    ||||| |||| ||||||||||||||| |||||||||||| |||||||    
T  33650024 tattagaaattcttaaagagtgtccttagggcactcgttgacaagac 33649978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 37426424 - 37426387
Alignment:
Q  12 cttaaagagtgtcctaagggcactcgttaacaagaccc 49  Q
    |||||||||||||| | |||||||||||||||||||||    
T  37426424 cttaaagagtgtcccaggggcactcgttaacaagaccc 37426387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 5694281 - 5694245
Alignment:
Q  13 ttaaagagtgtcctaagggcactcgttaacaagaccc 49  Q
    |||||||||||||| |||| |||||||||||||||||    
T  5694281 ttaaagagtgtcctgaggggactcgttaacaagaccc 5694245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 39312253 - 39312301
Alignment:
Q  2 attaaaaatccttaaagagtgtcctaagggcactcgttaacaagaccct 50  Q
    ||||| ||||||||||||||| |||| ||||||| |||| |||||||||    
T  39312253 attaagaatccttaaagagtgccctatgggcacttgttagcaagaccct 39312301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 15034895 - 15034937
Alignment:
Q  8 aatccttaaagagtgtcctaagggcactcgttaacaagaccct 50  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  15034895 aatccttaaagagtgtcctaagggcactcgttaacaagaccct 15034937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 17883403 - 17883452
Alignment:
Q  1 tattaaaaatccttaaagagtgtcctaagggcactcgttaacaagaccct 50  Q
    |||||||||||||||||||||| ||| ||| ||||||||||| |||||||    
T  17883403 tattaaaaatccttaaagagtgcccttaggacactcgttaactagaccct 17883452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 6388050 - 6388094
Alignment:
Q  8 aatccttaaagagtgtcctaagggcactcgttaacaagaccctaa 52  Q
    ||||||||||||||||| ||| |||||| ||||||||||||||||    
T  6388050 aatccttaaagagtgtcttaaaggcacttgttaacaagaccctaa 6388094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 20397574 - 20397618
Alignment:
Q  6 aaaatccttaaagagtgtcctaagggcactcgttaacaagaccct 50  Q
    |||||||||||||||| ||||||| |||||||||||||| |||||    
T  20397574 aaaatccttaaagagtatcctaagagcactcgttaacaaaaccct 20397618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 27076228 - 27076272
Alignment:
Q  8 aatccttaaagagtgtcctaagggcactcgttaacaagaccctaa 52  Q
    |||||||||||||||  |||||| |||||||||||||||||||||    
T  27076228 aatccttaaagagtgctctaaggacactcgttaacaagaccctaa 27076272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 27202073 - 27202029
Alignment:
Q  8 aatccttaaagagtgtcctaagggcactcgttaacaagaccctaa 52  Q
    |||||||||||||||  |||||| |||||||||||||||||||||    
T  27202073 aatccttaaagagtgctctaaggacactcgttaacaagaccctaa 27202029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 44319955 - 44319994
Alignment:
Q  11 ccttaaagagtgtcctaagggcactcgttaacaagaccct 50  Q
    |||||||||||||||| ||| |||||||||||||||||||    
T  44319955 ccttaaagagtgtccttaggacactcgttaacaagaccct 44319994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 17157871 - 17157908
Alignment:
Q  12 cttaaagagtgtcctaagggcactcgttaacaagaccc 49  Q
    ||||||||||| || |||||||||||||||||||||||    
T  17157871 cttaaagagtgccccaagggcactcgttaacaagaccc 17157908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 28663239 - 28663287
Alignment:
Q  12 cttaaagagtgtcctaagggcactcgttaacaagaccctaatttaaaata 61  Q
    ||||||||||| ||| ||||||||||||||||||||||| || |||||||    
T  28663239 cttaaagagtg-cctcagggcactcgttaacaagacccttatataaaata 28663287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 19700 - 19657
Alignment:
Q  7 aaatccttaaagagtgtcctaagggcactcgttaacaagaccct 50  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  19700 aaatccttaaagagtgccctaagggcactcgttaacaagaccct 19657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 43745633 - 43745591
Alignment:
Q  8 aatccttaaagagtgtcctaagggcactcgttaacaagaccct 50  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  43745633 aatccttaaagagtgccctaagggcactcgttaacaagaccct 43745591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 12133541 - 12133497
Alignment:
Q  8 aatccttaaagagtgtcctaagggcactcgttaacaagaccctaa 52  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||    
T  12133541 aatccttaaagagtgtcctaagggcacttgttaacaagactctaa 12133497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 5403548 - 5403505
Alignment:
Q  7 aaatccttaaagagtgtcctaagggcactcgttaacaagaccct 50  Q
    |||||||||||||||  |||||||||||||||||||||||||||    
T  5403548 aaatccttaaagagttccctaagggcactcgttaacaagaccct 5403505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 16572028 - 16571977
Alignment:
Q  7 aaatccttaaagagtgtcctaagggcactcgttaacaagaccctaatttaaa 58  Q
    ||||||||||||||||| |||| | ||||||||||||| || ||||||||||    
T  16572028 aaatccttaaagagtgttctaaagacactcgttaacaaaactctaatttaaa 16571977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 20064919 - 20064876
Alignment:
Q  9 atccttaaagagtgtcctaagggcactcgttaacaagaccctaa 52  Q
    |||||||||||||| ||||  |||||||||||||||||||||||    
T  20064919 atccttaaagagtgccctagaggcactcgttaacaagaccctaa 20064876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 15120144 - 15120190
Alignment:
Q  8 aatccttaaagagtgtcctaagggcactcgttaacaagaccctaatt 54  Q
    ||||||||||||||| ||||||||||||||||| |||| ||| ||||    
T  15120144 aatccttaaagagtgccctaagggcactcgttagcaaggcccaaatt 15120190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 32493162 - 32493216
Alignment:
Q  1 tattaaaaatccttaaagagtgtcctaagggcactcgttaacaagaccctaattt 55  Q
    |||||| ||||||||||||||||||| | | || |||||||||||||||| ||||    
T  32493162 tattaagaatccttaaagagtgtccttatgacagtcgttaacaagacccttattt 32493216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 18053113 - 18053158
Alignment:
Q  7 aaatccttaaagagtgtcctaagggcactcgttaacaagaccctaa 52  Q
    ||||||||||||||||||| | |  |||||||||||||||||||||    
T  18053113 aaatccttaaagagtgtcccaggaacactcgttaacaagaccctaa 18053158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 24762812 - 24762853
Alignment:
Q  9 atccttaaagagtgtcctaagggcactcgttaacaagaccct 50  Q
    |||||||||||||| ||| | |||||||||||||||||||||    
T  24762812 atccttaaagagtgacctgaaggcactcgttaacaagaccct 24762853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 33617941 - 33617892
Alignment:
Q  7 aaatccttaaagagtgtcctaagggcactcgttaacaagaccctaattta 56  Q
    |||||||||| ||||||| ||| |||||||||||||||||| || |||||    
T  33617941 aaatccttaatgagtgtcttaaaggcactcgttaacaagactcttattta 33617892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 433607 - 433643
Alignment:
Q  8 aatccttaaagagtgtcctaagggcactcgttaacaa 44  Q
    |||||||||||||||||||  ||||||||||||||||    
T  433607 aatccttaaagagtgtcctcggggcactcgttaacaa 433643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 3882621 - 3882581
Alignment:
Q  12 cttaaagagtgtcctaagggcactcgttaacaagaccctaa 52  Q
    ||||||||||| ||  |||||||||||||||||||||||||    
T  3882621 cttaaagagtgccccgagggcactcgttaacaagaccctaa 3882581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 20683094 - 20683134
Alignment:
Q  8 aatccttaaagagtgtcctaagggcactcgttaacaagacc 48  Q
    ||||||||||||||||||   ||||||||||||||||||||    
T  20683094 aatccttaaagagtgtcccgggggcactcgttaacaagacc 20683134  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 29408012 - 29407963
Alignment:
Q  8 aatccttaaagagtgtcctaagggcactcgttaacaagaccctaatttaa 57  Q
    ||||||||||||||| ||| | ||||||||||||||||||||||||||||    
T  29408012 aatccttaaagagtgcccttaaggcactcgttaacaagaccctaatttaa 29407963  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 343066 - 343106
Alignment:
Q  21 tgtcctaagggcactcgttaacaagaccctaatttaaaata 61  Q
    |||||||||||| || ||||||||||||||| |||||||||    
T  343066 tgtcctaagggctcttgttaacaagaccctattttaaaata 343106  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 35229299 - 35229259
Alignment:
Q  10 tccttaaagagtgtcctaagggcactcgttaacaagaccct 50  Q
    ||||||||||||||||   ||||||||||||||||||||||    
T  35229299 tccttaaagagtgtcccgggggcactcgttaacaagaccct 35229259  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 591314 - 591363
Alignment:
Q  1 tattaaaaatccttaaagagtgtcctaagggcactcgttaacaagaccct 50  Q
    ||||| |||||||||||||||||| | |||||||||||||||||||||||    
T  591314 tattagaaatccttaaagagtgtctttagggcactcgttaacaagaccct 591363  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 162
Target Start/End: Complemental strand, 6599222 - 6599137
Alignment:
Q  77 agtttttcaagttagttagaaatcatttgacattcatgcgccataggtgttagtttatgtatttttctataaataatagaatcaaa 162  Q
    |||||||||||||||||||||    |||||||||||||| |||||   |||||||||  | |||||||||||||| || |||||||    
T  6599222 agtttttcaagttagttagaagaagtttgacattcatgcaccatataagttagtttagttctttttctataaatagtataatcaaa 6599137  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 30327580 - 30327627
Alignment:
Q  1 tattaaaaatccttaaagagtgtcctaagggcactcgttaacaagacc 48  Q
    |||| ||||| ||||||||||||||||||| ||||||||| |||||||    
T  30327580 tatttaaaattcttaaagagtgtcctaaggacactcgttagcaagacc 30327627  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 2112549 - 2112510
Alignment:
Q  12 cttaaagagtgtcctaagggcactcgttaacaagaccctaa 52  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  2112549 cttaaagagtgtccga-gggcactcgttaacaagaccctaa 2112510  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 60
Target Start/End: Original strand, 9276700 - 9276728
Alignment:
Q  32 cactcgttaacaagaccctaatttaaaat 60  Q
    |||||||||||||||||||||||||||||    
T  9276700 cactcgttaacaagaccctaatttaaaat 9276728  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 17437025 - 17436989
Alignment:
Q  13 ttaaagagtgtcctaagggcactcgttaacaagaccc 49  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  17437025 ttaaagagtgtcctaagggcactcattaaccagaccc 17436989  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 25437976 - 25438016
Alignment:
Q  12 cttaaagagtgtcctaagggcactcgttaacaagaccctaa 52  Q
    ||||||||||||||   ||||||||||||||||||||||||    
T  25437976 cttaaagagtgtcccgggggcactcgttaacaagaccctaa 25438016  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 45925508 - 45925460
Alignment:
Q  1 tattaaaaatccttaaagagtgtcctaagggcactcgttaacaagaccc 49  Q
    |||||| ||||||||||||||||||| ||| ||||||||||||||||||    
T  45925508 tattaagaatccttaaagagtgtccttaggacactcgttaacaagaccc 45925460  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 49003657 - 49003613
Alignment:
Q  8 aatccttaaagagtgtcctaagggcactcgttaacaagaccctaa 52  Q
    |||||||||| |||||||| |||||||||||||||||||||||||    
T  49003657 aatccttaaatagtgtccttagggcactcgttaacaagaccctaa 49003613  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 43492226 - 43492268
Alignment:
Q  8 aatccttaaagagtgtcctaagggcactcgttaacaagaccct 50  Q
    ||||||||||||||| ||| |||||||||||||||||||||||    
T  43492226 aatccttaaagagtgcccttagggcactcgttaacaagaccct 43492268  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 13792088 - 13792136
Alignment:
Q  2 attaaaaatccttaaagagtgtcctaagggcactcgttaacaagaccct 50  Q
    |||||||| |||||||||||||| ||||| ||||||||| |||||||||    
T  13792088 attaaaaaaccttaaagagtgtcttaaggacactcgttagcaagaccct 13792136  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 40377051 - 40377009
Alignment:
Q  8 aatccttaaagagtgtcctaagggcactcgttaacaagaccct 50  Q
    ||||||||||||||| || | ||||||||||||||||||||||    
T  40377051 aatccttaaagagtgcccaaggggcactcgttaacaagaccct 40377009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 11411063 - 11411100
Alignment:
Q  7 aaatccttaaagagtgtcctaagggcactcgttaacaa 44  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  11411063 aaatccttaaagagtgtccttaggacactcgttaacaa 11411100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 25302081 - 25302037
Alignment:
Q  8 aatccttaaagagtgtcctaagggcactcgttaacaagaccctaa 52  Q
    |||||||||||||||| ||  || |||||||||||||||||||||    
T  25302081 aatccttaaagagtgttctggggacactcgttaacaagaccctaa 25302037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 46521513 - 46521471
Alignment:
Q  8 aatccttaaagagtgtcctaagggcactcgttaacaagaccct 50  Q
    |||||||||||||||  ||||||||||||||||||||||||||    
T  46521513 aatccttaaagagtgctctaagggcactcgttaacaagaccct 46521471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 28695775 - 28695734
Alignment:
Q  8 aatccttaaagagtgtcctaagggcactcgttaacaagaccc 49  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  28695775 aatccttaaagagtgcccttagggcactcgttaacaagaccc 28695734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 24175499 - 24175535
Alignment:
Q  12 cttaaagagtgtcctaagggcactcgttaacaagacc 48  Q
    ||||||||||||||||||| |||||||||||||||||    
T  24175499 cttaaagagtgtcctaaggacactcgttaacaagacc 24175535  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 23135523 - 23135574
Alignment:
Q  1 tattaaaaatccttaaagagtgtcctaagggcactcgttaacaagaccctaa 52  Q
    ||||| ||||||||||||||||  || ||| |||||||||||||||||||||    
T  23135523 tattagaaatccttaaagagtgcacttaggacactcgttaacaagaccctaa 23135574  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 30161464 - 30161511
Alignment:
Q  1 tattaaaaatccttaaagagtgtcctaagggcactcgttaacaagacc 48  Q
    ||||| ||||||||||||||| |||| ||| |||||||||||||||||    
T  30161464 tattagaaatccttaaagagtatccttaggacactcgttaacaagacc 30161511  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 5047220 - 5047166
Alignment:
Q  1 tattaaaaatccttaaagagtgtcctaagggcactcgttaacaagaccctaattt 55  Q
    ||||| |||||||||| ||||| ||| ||||||||||||||||| ||||| ||||    
T  5047220 tattagaaatccttaatgagtgcccttagggcactcgttaacaaaacccttattt 5047166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 31655509 - 31655473
Alignment:
Q  11 ccttaaagagtgtcctaagggcactcgttaacaagac 47  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  31655509 ccttaaaaagtgccctaagggcactcgttaacaagac 31655473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 36702803 - 36702763
Alignment:
Q  13 ttaaagagtgtcctaagggcactcgttaacaagaccctaat 53  Q
    |||||||||||||  || |||||||||||||||||||||||    
T  36702803 ttaaagagtgtccctagagcactcgttaacaagaccctaat 36702763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 11465715 - 11465761
Alignment:
Q  1 tattaaaaatccttaaagagtgtcctaagggcactcgttaacaagac 47  Q
    ||||||||||||||||||||||| || ||| ||||||||||||||||    
T  11465715 tattaaaaatccttaaagagtgttcttaggacactcgttaacaagac 11465761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 32606498 - 32606533
Alignment:
Q  17 agagtgtcctaagggcactcgttaacaagaccctaa 52  Q
    ||||||||||||| ||||||||||||||||||||||    
T  32606498 agagtgtcctaagagcactcgttaacaagaccctaa 32606533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 28434522 - 28434472
Alignment:
Q  6 aaaatccttaaagagtgtcctaagggcactcgttaacaagaccctaattta 56  Q
    ||||||||||||||||||||   | |||||||||||||||||||| |||||    
T  28434522 aaaatccttaaagagtgtcccgggagcactcgttaacaagacccttattta 28434472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 7278263 - 7278304
Alignment:
Q  9 atccttaaagagtgtcctaagggcactcgttaacaagaccct 50  Q
    |||||||||||||| ||| ||||||||||||| |||||||||    
T  7278263 atccttaaagagtgcccttagggcactcgttagcaagaccct 7278304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 32734690 - 32734654
Alignment:
Q  8 aatccttaaagagtgtcctaagggcactcgttaacaa 44  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  32734690 aatccttaaagagtgcccttagggcactcgttaacaa 32734654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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