View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3629_high_3 (Length: 745)
Name: NF3629_high_3
Description: NF3629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3629_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 370 - 736
Target Start/End: Complemental strand, 56019428 - 56019062
Alignment:
| Q |
370 |
gatggtgtgtgtgattgcataagcgttgttgttctgttttatgacttaatttctgttgttacattatctcatttggcataacttttgatgtgtattttgt |
469 |
Q |
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| T |
56019428 |
gatggtgtgtgtgattgcataagcgttgttgttctgttttatggcttgatttctgttgttacattatctcatttggcataacttttgatgtctattttgt |
56019329 |
T |
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| Q |
470 |
tttcgactacgagaatttccaacatttacacacattgcacatcaatcatttctactagatcccaattgattactatgtatattgcaaaaaataacatgat |
569 |
Q |
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| T |
56019328 |
tttcgactacgagaatttccaacatttacacacattgcacatcaatcatttctactaggtcccaattgattactatgtatattgcaaaaaataacatgat |
56019229 |
T |
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| Q |
570 |
catgacttaaaaatattgattatcattcgtaaacaaggcgagagaaaagcatgaatgactctgctttttcaatattctgtagctagctttcataggatag |
669 |
Q |
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| T |
56019228 |
catgacttaaaaatattgattatcattcgtaaacaaggcgagagaagagcatgaatgactctgctttttcaatattctgtagctagctttcataggatag |
56019129 |
T |
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| Q |
670 |
accatattcaacgcatgcatgtctagatttatgtgtattacattatgcatcagtggcggattttctt |
736 |
Q |
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| T |
56019128 |
accatattcaacgcatgcatgtctagctttatgtgtattacatgatgcatcagtggcggattttctt |
56019062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 67 - 375
Target Start/End: Complemental strand, 56019813 - 56019482
Alignment:
| Q |
67 |
ttgtagtgtttggttttcacaatattgattttgcaaacactgaggctggaggtgctttggttttacaatagataaatggtgttgtaattatttggcttgc |
166 |
Q |
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| T |
56019813 |
ttgtagtgtttggttttcacaatattgattttgcaaacactgaggttggaggtgctttgattttacaatagataaatggtgttgtaattatttggcttgc |
56019714 |
T |
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| Q |
167 |
aattgccttggtaattaactgaactgccaaaggaaatttcaagttttatca-ttgattggtgagaatagagaaataaattgttgatttgttcaaggctat |
265 |
Q |
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| T |
56019713 |
aattgccttggtaattaactgatctgccaaaggaaatttcaagttttatcatttgattggtgagaatagagaaataaattgttgatttgttcaaggctat |
56019614 |
T |
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| Q |
266 |
tagtagcaaagtttgctttggttgttgtaata----------------------acgttgtggtatggttttatggcatggagatcaagtctaatagtat |
343 |
Q |
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| T |
56019613 |
tagtagcaaagtttgctttggttgttgtaatatggtgtttaggcgctgcagcacacgttgtggtatggttttatggcatggagatcaagtctaatagtat |
56019514 |
T |
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| Q |
344 |
tatgcaaaacatgttggcttaagggtgatggt |
375 |
Q |
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| T |
56019513 |
tatgcaaaacatgttggcttaagggtgatggt |
56019482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 56019938 - 56019886
Alignment:
| Q |
17 |
taggtataagattctaggttgtttttcatttatgttcatgctttagatttttg |
69 |
Q |
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| T |
56019938 |
taggtataagattctaggttgtttttcatttatgttcatgctttagatttttg |
56019886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 6155669 - 6155619
Alignment:
| Q |
15 |
cataggtataagattctaggttgtttttcatttatgttcatgctttagatt |
65 |
Q |
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| T |
6155669 |
cataggcattagattctaggttgtttttcatttatgtccatgattttgatt |
6155619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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