View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3629_high_36 (Length: 219)
Name: NF3629_high_36
Description: NF3629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3629_high_36 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 32371867 - 32371912
Alignment:
| Q |
174 |
ccttaaaatcaggcaaaagccagaaggtaagagaacttgtataaag |
219 |
Q |
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| T |
32371867 |
ccttaaaatcaggcaaaatccagaaggtaagagaacttgtataaag |
32371912 |
T |
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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 133
Target Start/End: Original strand, 32371781 - 32371816
Alignment:
| Q |
98 |
atattaagcttatgcactaagaaaacatgaaggcat |
133 |
Q |
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| T |
32371781 |
atattaagcttatgcactaagaaaacatgaatgcat |
32371816 |
T |
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