View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3629_high_8 (Length: 434)
Name: NF3629_high_8
Description: NF3629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3629_high_8 |
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| [»] chr1 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 19 - 434
Target Start/End: Original strand, 27686090 - 27686505
Alignment:
| Q |
19 |
ttgaggtccccaaaggtttctataaccattataaaagctcatagacctgactttggaacttggccagtaaccgggggaaggtggccaataggcattgctt |
118 |
Q |
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| T |
27686090 |
ttgaggtccccaaaggtttctataaccattgtaaaagctcatagacctgactttggaacttggccagtaaccgggggaaggtggccaataggcattgctt |
27686189 |
T |
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| Q |
119 |
gaaggagccataaagaataaactagcaaagataaatatgaaaggaaaggccatgaagaaaggtaggtaacttaaattttaagcagaaaacaaaatgatgc |
218 |
Q |
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| T |
27686190 |
gaagaagccataaagaataaactagcaaagagaaatatgaaaggaaaggccatgaagaaaggtaggtaacttaaattttaagcagaaaacaaaatgatgc |
27686289 |
T |
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| Q |
219 |
ttgtgtgtataaatgcagggtgtgtgtgagagtgatgggctactcagtgaaaggtgcatatggatgaagagtatggcagtacatattgatagtagtataa |
318 |
Q |
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| T |
27686290 |
ttgtgtgtataaatgcagggtgtgtgtgagagtgatggactactcagtgaaaggtgcatatggatgaagagtatggcagtacatattgatagtagtataa |
27686389 |
T |
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| Q |
319 |
atatagaaaattaatgggtccctctacaatcgacaactatgaaacaccgggaacggcaatgggctaaacgttcaagaccaataagagagatagatgcctc |
418 |
Q |
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| T |
27686390 |
atatagaaaattaatgggtccctctacaatcgacaactatgaaacaccgggaacggcaatgagctaaacgttcaagaccaataagagagatagaagccac |
27686489 |
T |
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| Q |
419 |
atctcgccctaaaacc |
434 |
Q |
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| T |
27686490 |
atctcgacctaaaacc |
27686505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 41268561 - 41268434
Alignment:
| Q |
19 |
ttgaggtccccaaaggtttctataaccattataaaagctcatagacctgactttggaacttggccagtaaccgggggaaggtggccaataggcattgctt |
118 |
Q |
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| T |
41268561 |
ttgagggccccaacggtttgtaaaacctttgtaaaagttcatagacttgaactttgaacttggccagtagccaggtgaaggtggccaataagcattgctt |
41268462 |
T |
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| Q |
119 |
gaaggagccataaagaataaactagcaa |
146 |
Q |
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| T |
41268461 |
gaaaatgtcattaagaataaaatagcaa |
41268434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 434
Target Start/End: Complemental strand, 40053320 - 40053252
Alignment:
| Q |
366 |
cgggaacggcaatgggctaaacgttcaagaccaataagagagatagatgcctcatctcgccctaaaacc |
434 |
Q |
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| T |
40053320 |
cgggagcggcaatgagctaaacgttcaagaccaccaagagacttagacgccacatctccacctaaaacc |
40053252 |
T |
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