View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3629_high_9 (Length: 417)

Name: NF3629_high_9
Description: NF3629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3629_high_9
NF3629_high_9
[»] chr5 (1 HSPs)
chr5 (16-408)||(33560370-33560762)
[»] chr2 (46 HSPs)
chr2 (17-372)||(39390672-39391027)
chr2 (195-408)||(39389548-39389761)
chr2 (194-372)||(39221248-39221426)
chr2 (132-288)||(39222109-39222265)
chr2 (132-288)||(39221899-39222055)
chr2 (19-115)||(39389435-39389531)
chr2 (17-112)||(39221445-39221540)
chr2 (190-397)||(39136691-39136898)
chr2 (110-259)||(39415618-39415767)
chr2 (48-280)||(39222033-39222265)
chr2 (123-283)||(39192611-39192771)
chr2 (123-283)||(39198291-39198451)
chr2 (64-280)||(39221823-39222039)
chr2 (44-142)||(39389859-39389957)
chr2 (123-256)||(39222603-39222736)
chr2 (123-217)||(39136997-39137091)
chr2 (114-280)||(39222243-39222409)
chr2 (17-85)||(39193051-39193119)
chr2 (17-85)||(39198731-39198799)
chr2 (20-127)||(39390003-39390110)
chr2 (190-341)||(39415824-39415975)
chr2 (123-221)||(39451577-39451675)
chr2 (16-79)||(39161578-39161641)
chr2 (16-79)||(39207553-39207616)
chr2 (12-211)||(39451251-39451450)
chr2 (110-253)||(39451293-39451436)
chr2 (53-154)||(39222621-39222722)
chr2 (143-280)||(39398145-39398282)
chr2 (195-256)||(39415451-39415512)
chr2 (114-257)||(39192854-39192997)
chr2 (114-257)||(39198534-39198677)
chr2 (133-224)||(39391031-39391122)
chr2 (161-280)||(39467949-39468068)
chr2 (24-115)||(39602839-39602930)
chr2 (161-267)||(38792776-38792882)
chr2 (192-292)||(39415106-39415206)
chr2 (108-219)||(39192680-39192791)
chr2 (108-219)||(39198360-39198471)
chr2 (122-217)||(39389853-39389948)
chr2 (114-225)||(39390559-39390670)
chr2 (17-127)||(38792832-38792942)
chr2 (193-255)||(39390092-39390154)
chr2 (320-397)||(39451779-39451856)
chr2 (123-171)||(39137190-39137238)
chr2 (123-171)||(39381682-39381730)
chr2 (119-187)||(39602851-39602919)
[»] chr7 (1 HSPs)
chr7 (190-397)||(19807052-19807259)


Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 16 - 408
Target Start/End: Complemental strand, 33560762 - 33560370
Alignment:
Q  16 catgcttctgttttgatagcaagtccatcatttggcattcaaactccttctcttttgattcaaacatctttactttgcctacaagttcgttatcttttga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33560762 catgcttctgttttgatagcaagtccatcatttggcattcaaactccttctcttttgattcaaacatctttactttgcctacaagttcgttatcttttga 33560663  T
Q  116 ttccaactccttcagttggccttcaaattccttcttttttaatttaaactccttcagttggcctacaagttgactctcttttgactcaaactccttaact 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33560662 ttccaactccttcagttggccttcaaattccttcttttttaatttaaactccttcagttggcctacaagttgactctcttttgactcaaactccttaact 33560563  T
Q  216 tgtctttcaatgtggttctttttagattccagctccttcacctgaccatcaagttgcttctctttagaatcaagctcttgaagttgttctttcaacgacc 315  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33560562 tgtctttcaaagtggttctttttagattccagctccttcacctgaccatcaagttgcttctctttagaatcaagttcttgaagttgttctttcaacgacc 33560463  T
Q  316 tcaattttgatttgagctcctccaccatgctttcgaaatgcttcgctttatattccatctccttcacacagccttcaaattccttctcctttg 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33560462 tcaattttgatttgagctcctccaccatgctttcgaaatgcttcgctttatattccatctccttcacacagccttcaaattccttctcctttg 33560370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 46)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 17 - 372
Target Start/End: Original strand, 39390672 - 39391027
Alignment:
Q  17 atgcttctgttttgatagcaagtccatcatttggcattcaaactccttctcttttgattcaaacatctttactttgcctacaagttcgttatcttttgat 116  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||| || ||||||||||||     
T  39390672 atgcttctgttttgatagcaaatccatcatttggcattcaaattccttctcttttgattcaaactcctttactttgcctacaaatttgttatcttttgac 39390771  T
Q  117 tccaactccttcagttggccttcaaattccttcttttttaatttaaactccttcagttggcctacaagttgactctcttttgactcaaactccttaactt 216  Q
    || |||||||||||||   |||||||||||||||||||| ||| ||| ||||||| | ||||| ||||||||||||||||||||||||||||||| || |    
T  39390772 tcaaactccttcagttcatcttcaaattccttcttttttgattcaaattccttcactcggccttcaagttgactctcttttgactcaaactccttcacct 39390871  T
Q  217 gtctttcaatgtggttctttttagattccagctccttcacctgaccatcaagttgcttctctttagaatcaagctcttgaagttgttctttcaacgacct 316  Q
    || |||||| || || |||||||||||| ||||| || |  |||  ||||||||||||||||||||| ||||| || | || |||||||||||| |||||    
T  39390872 gtttttcaaagtagtcctttttagattctagctctttaatttgatgatcaagttgcttctctttagagtcaagttcctcaacttgttctttcaaagacct 39390971  T
Q  317 caattttgatttgagctcctccaccatgctttcgaaatgcttcgctttatattcca 372  Q
    || | |||||||||||||||||| ||||| |||||||||||||  |||| ||||||    
T  39390972 cattcttgatttgagctcctccatcatgccttcgaaatgcttctttttagattcca 39391027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 195 - 408
Target Start/End: Original strand, 39389548 - 39389761
Alignment:
Q  195 tttgactcaaactccttaacttgtctttcaatgtggttctttttagattccagctccttcacctgaccatcaagttgcttctctttagaatcaagctctt 294  Q
    ||||||||||||||  | ||||||||||||| ||||| |||||||||||||| ||||||||| || |||||||||||||||||||| || ||||  || |    
T  39389548 tttgactcaaactctatcacttgtctttcaaagtggtcctttttagattccacctccttcacttggccatcaagttgcttctctttggagtcaaattcct 39389647  T
Q  295 gaagttgttctttcaacgacctcaattttgatttgagctcctccaccatgctttcgaaatgcttcgctttatattccatctccttcacacagccttcaaa 394  Q
    ||| |||| |||||||   |||||||||||||||||||||| ||| |||||||||||||||||||  |||| |||||| ||||||| |    ||||||||    
T  39389648 gaaattgtactttcaatagcctcaattttgatttgagctccaccatcatgctttcgaaatgcttctttttagattccagctccttcgcttgaccttcaaa 39389747  T
Q  395 ttccttctcctttg 408  Q
    ||||||||||||||    
T  39389748 ttccttctcctttg 39389761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 194 - 372
Target Start/End: Complemental strand, 39221426 - 39221248
Alignment:
Q  194 ttttgactcaaactccttaacttgtctttcaatgtggttctttttagattccagctccttcacctgaccatcaagttgcttctctttagaatcaagctct 293  Q
    |||||| ||||||||||| || || ||||||| ||| ||||||| |||||||||||||||||| || |||||||||||||||||||| || ||||| ||     
T  39221426 ttttgattcaaactccttcacctgactttcaaagtgattcttttgagattccagctccttcacttggccatcaagttgcttctctttggagtcaagttcc 39221327  T
Q  294 tgaagttgttctttcaacgacctcaattttgatttgagctcctccaccatgctttcgaaatgcttcgctttatattcca 372  Q
    | ||  ||| ||||||| || ||||   |||||||||||||||||| |||||||||||||||||||  |||| ||||||    
T  39221326 tcaacctgtcctttcaatgaactcatgcttgatttgagctcctccatcatgctttcgaaatgcttctttttagattcca 39221248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 132 - 288
Target Start/End: Complemental strand, 39222265 - 39222109
Alignment:
Q  132 tggccttcaaattccttcttttttaatttaaactccttcagttggcctacaagttgactctcttttgactcaaactccttaacttgtctttcaatgtggt 231  Q
    ||||||||||||||| ||| |||| ||||||||| | ||| |||||||||||||||  | ||||||||||  |||||||| ||||| |||||||   | |    
T  39222265 tggccttcaaattccctctcttttgatttaaacttcctcaattggcctacaagttggttatcttttgactttaactccttcacttggctttcaaacagct 39222166  T
Q  232 tctttttagattccagctccttcacctgaccatcaagttgcttctctttagaatcaa 288  Q
    ||||||||||||||||||||||||| || | ||||||||||||||||||||| ||||    
T  39222165 tctttttagattccagctccttcacttggctatcaagttgcttctctttagactcaa 39222109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 132 - 288
Target Start/End: Complemental strand, 39222055 - 39221899
Alignment:
Q  132 tggccttcaaattccttcttttttaatttaaactccttcagttggcctacaagttgactctcttttgactcaaactccttaacttgtctttcaatgtggt 231  Q
    ||||||||||||| | ||| |||| ||||||||| | ||| |||||||||||||||  | ||||||||||  |||||||| ||||| |||||||   | |    
T  39222055 tggccttcaaattgcctctcttttgatttaaacttcctcaattggcctacaagttggttatcttttgactttaactccttcacttggctttcaaacagct 39221956  T
Q  232 tctttttagattccagctccttcacctgaccatcaagttgcttctctttagaatcaa 288  Q
    ||||||||||||||||||||||||| || | ||||||||||||||||||||| ||||    
T  39221955 tctttttagattccagctccttcacttggctatcaagttgcttctctttagactcaa 39221899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 39389435 - 39389531
Alignment:
Q  19 gcttctgttttgatagcaagtccatcatttggcattcaaactccttctcttttgattcaaacatctttactttgcctacaagttcgttatcttttga 115  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| ||||||| |||||| |||||||| ||||||||||||||||||    
T  39389435 gcttctgatttgatagcaagtccatcatttggcattcaaattccttttcttttgtttcaaacttctttattttgcctataagttcgttatcttttga 39389531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 39221540 - 39221445
Alignment:
Q  17 atgcttctgttttgatagcaagtccatcatttggcattcaaactccttctcttttgattcaaacatctttactttgcctacaagttcgttatcttt 112  Q
    ||||| ||||||||||| | || |||||||| || ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39221540 atgctcctgttttgataccgagcccatcattaggtattcaaattccttctcttttgattcaaacttctttactttgcctacaagttcgttatcttt 39221445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 190 - 397
Target Start/End: Complemental strand, 39136898 - 39136691
Alignment:
Q  190 tctcttttgactcaaactccttaacttgtctttcaatgtggttctttttagattccagctccttcacctgaccatcaagttgcttctctttagaatcaag 289  Q
    ||||||||||||||| |||||| | | |  | ||||  ||||||||||||||||||||||||||||| || ||||  |||||||||||||||||  ||||    
T  39136898 tctcttttgactcaagctccttgattcggttctcaaactggttctttttagattccagctccttcacttggccattcagttgcttctctttagaggcaag 39136799  T
Q  290 ctcttgaagttgttctttcaacgacctcaattttgatttgagctcctccaccatgctttcgaaatgcttcgctttatattccatctccttcacacagcct 389  Q
     || | || |||| ||||||| | | |||||||||  |||| ||||||||||  ||||| ||||||| || ||||| |||||| ||| ||||  | ||||    
T  39136798 ttccttaatttgtcctttcaatggcatcaattttgcattgatctcctccacctcgcttttgaaatgcctctctttagattccagctcattcatccggcct 39136699  T
Q  390 tcaaattc 397  Q
    ||||||||    
T  39136698 tcaaattc 39136691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 110 - 259
Target Start/End: Original strand, 39415618 - 39415767
Alignment:
Q  110 ttttgattccaactccttcagttggccttcaaattccttcttttttaatttaaactccttcagttggcctacaagttgactctcttttgactcaaactcc 209  Q
    ||||||| |||  ||||||| |||||||||||||||| ||| |||| ||||||||||||||| |||| |||| |||||    ||||||||||| ||||||    
T  39415618 ttttgatgccagttccttcatttggccttcaaattccctctcttttgatttaaactccttcatttggtctacgagttgctgttcttttgactctaactcc 39415717  T
Q  210 ttaacttgtctttcaatgtggttctttttagattccagctccttcacctg 259  Q
    || |||||  ||||||   | ||||||||||||| |||||||||||||||    
T  39415718 ttgacttggatttcaaacagcttctttttagatttcagctccttcacctg 39415767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 48 - 280
Target Start/End: Complemental strand, 39222265 - 39222033
Alignment:
Q  48 tggcattcaaactccttctcttttgattcaaacatctttactttgcctacaagttcgttatcttttgattccaactccttcagttggccttcaaattcct 147  Q
    |||| |||||| ||| |||||||||||| |||| || | | || ||||||||||| |||||||||||| |  |||||||||| ||||| ||||||   ||    
T  39222265 tggccttcaaattccctctcttttgatttaaacttcctcaattggcctacaagttggttatcttttgactttaactccttcacttggctttcaaacagct 39222166  T
Q  148 tcttttttaatttaaactccttcagttggcctacaagttgactctcttttgactcaaactccttaacttgtctttcaatgtggttctttttagattccag 247  Q
    |||||||  |||  | |||||||| |||||   |||||||  ||||||| |||||||||||||| | ||| ||||| |  || ||| |||||||||||||    
T  39222165 tctttttagattccagctccttcacttggctatcaagttgcttctctttagactcaaactccttcatttggctttcgaaatgcttccttttagattccag 39222066  T
Q  248 ctccttcacctgaccatcaagttgcttctcttt 280  Q
    || |||| |||| || |||| |||| |||||||    
T  39222065 ctgcttcgcctggccttcaaattgcctctcttt 39222033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 123 - 283
Target Start/End: Original strand, 39192611 - 39192771
Alignment:
Q  123 tccttcagttggccttcaaattccttcttttttaatttaaactccttcagttggcctacaagttgactctcttttgactcaaactccttaacttgtcttt 222  Q
    ||||||| ||||||||| |||||  ||| |||| ||| |  |||||||| |||| || || | ||  |||||||||||||||||||||| ||||| | ||    
T  39192611 tccttcacttggccttcgaattctctctcttttgattcacgctccttcacttggacttcatgatgcttctcttttgactcaaactccttcacttggcatt 39192710  T
Q  223 caatgtggttctttttagattccagctccttcacctgaccatcaagttgcttctctttaga 283  Q
    |||   | |||||||||||||||||||||||||  || | |||||||||||||||||||||    
T  39192711 caaatagcttctttttagattccagctccttcagttggctatcaagttgcttctctttaga 39192771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 123 - 283
Target Start/End: Original strand, 39198291 - 39198451
Alignment:
Q  123 tccttcagttggccttcaaattccttcttttttaatttaaactccttcagttggcctacaagttgactctcttttgactcaaactccttaacttgtcttt 222  Q
    ||||||| ||||||||| |||||  ||| |||| ||| |  |||||||| |||| || || | ||  |||||||||||||||||||||| ||||| | ||    
T  39198291 tccttcacttggccttcgaattctctctcttttgattcacgctccttcacttggacttcatgatgcttctcttttgactcaaactccttcacttggcatt 39198390  T
Q  223 caatgtggttctttttagattccagctccttcacctgaccatcaagttgcttctctttaga 283  Q
    |||   | |||||||||||||||||||||||||  || | |||||||||||||||||||||    
T  39198391 caaatagcttctttttagattccagctccttcagttggctatcaagttgcttctctttaga 39198451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 64 - 280
Target Start/End: Complemental strand, 39222039 - 39221823
Alignment:
Q  64 tctcttttgattcaaacatctttactttgcctacaagttcgttatcttttgattccaactccttcagttggccttcaaattccttcttttttaatttaaa 163  Q
    |||||||||||| |||| || | | || ||||||||||| |||||||||||| |  |||||||||| ||||| ||||||   |||||||||  |||  |     
T  39222039 tctcttttgatttaaacttcctcaattggcctacaagttggttatcttttgactttaactccttcacttggctttcaaacagcttctttttagattccag 39221940  T
Q  164 ctccttcagttggcctacaagttgactctcttttgactcaaactccttaacttgtctttcaatgtggttctttttagattccagctccttcacctgacca 263  Q
    |||||||| |||||   |||||||  ||||||| |||||||||||||| | ||| ||||| |  || ||| ||||||||||||||| |||| |||| ||     
T  39221939 ctccttcacttggctatcaagttgcttctctttagactcaaactccttcatttggctttcgaaatgcttccttttagattccagctgcttcgcctggcct 39221840  T
Q  264 tcaagttgcttctcttt 280  Q
    |||| |||| |||||||    
T  39221839 tcaaattgcctctcttt 39221823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 44 - 142
Target Start/End: Original strand, 39389859 - 39389957
Alignment:
Q  44 catttggcattcaaactccttctcttttgattcaaacatctttactttgcctacaagttcgttatcttttgattccaactccttcagttggccttcaaa 142  Q
    |||||||||||||||  || |||||||||||||||||  | | | |||||||||||||| |||||||||||| || |||||||||| ||||||||||||    
T  39389859 catttggcattcaaatcccctctcttttgattcaaactccatcattttgcctacaagttggttatcttttgactctaactccttcacttggccttcaaa 39389957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 123 - 256
Target Start/End: Complemental strand, 39222736 - 39222603
Alignment:
Q  123 tccttcagttggccttcaaattccttcttttttaatttaaactccttcagttggcctacaagttgactctcttttgactcaaactccttaacttgtcttt 222  Q
    ||||||| |||  |||||||||||||||  ||| ||| ||||||||| | || || || ||||||  | ||||||||||| |||||||||||||| ||||    
T  39222736 tccttcacttgttcttcaaattccttctcctttgattcaaactcctttattttgcatataagttggttatcttttgactctaactccttaacttggcttt 39222637  T
Q  223 caatgtggttctttttagattccagctccttcac 256  Q
    |||  || ||||||||||||| ||||||||||||    
T  39222636 caacctgcttctttttagattgcagctccttcac 39222603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 123 - 217
Target Start/End: Complemental strand, 39137091 - 39136997
Alignment:
Q  123 tccttcagttggccttcaaattccttcttttttaatttaaactccttcagttggcctacaagttgactctcttttgactcaaactccttaacttg 217  Q
    ||||||| |||||||||||||||| ||| |||| ||||||||||||||| |||| ||||||||||  | ||||||||||| ||| |||| |||||    
T  39137091 tccttcatttggccttcaaattccatctcttttgatttaaactccttcatttggtctacaagttggttttcttttgactctaacgccttgacttg 39136997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 114 - 280
Target Start/End: Complemental strand, 39222409 - 39222243
Alignment:
Q  114 gattccaactccttcagttggccttcaaattccttcttttttaatttaaactccttcagttggcctacaagttgactctcttttgactcaaactccttaa 213  Q
    |||||||  ||||||||||||||||| ||| |  ||| |||| |||||  |||||||| ||||||| |||||||  ||||||| |||||||||||||| |    
T  39222409 gattccagttccttcagttggccttcgaatcctctctcttttgatttatgctccttcacttggccttcaagttgcttctctttagactcaaactccttca 39222310  T
Q  214 cttgtctttcaatgtggttctttttagattccagctccttcacctgaccatcaagttgcttctcttt 280  Q
     ||| ||||| |  || ||| ||||||||||||||| |||| |||| || |||| || | |||||||    
T  39222309 tttggctttcgaaatgcttccttttagattccagctgcttcgcctggccttcaaattccctctcttt 39222243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 39193051 - 39193119
Alignment:
Q  17 atgcttctgttttgatagcaagtccatcatttggcattcaaactccttctcttttgattcaaacatctt 85  Q
    ||||| ||||||||||| | ||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  39193051 atgctcctgttttgataccgagtccgtcatttggcattcaaattccttctcttttgattcaaacttctt 39193119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 39198731 - 39198799
Alignment:
Q  17 atgcttctgttttgatagcaagtccatcatttggcattcaaactccttctcttttgattcaaacatctt 85  Q
    ||||| ||||||||||| | ||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  39198731 atgctcctgttttgataccgagtccgtcatttggcattcaaattccttctcttttgattcaaacttctt 39198799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 39390003 - 39390110
Alignment:
Q  20 cttctgttttgatagcaagtccatcatttggcattcaaactccttctcttttgattcaaacatc-tttactttgcctacaagttcgttatcttttgattc 118  Q
    |||||||||||||  |||||||||||||||||||||||| |||||||| ||  | ||||| ||| |||||||| ||||||||||||||| |||| || ||    
T  39390003 cttctgttttgatgccaagtccatcatttggcattcaaattccttctccttaaactcaaa-atcttttacttttcctacaagttcgttacctttagactc 39390101  T
Q  119 caactcctt 127  Q
     ||||||||    
T  39390102 taactcctt 39390110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 190 - 341
Target Start/End: Original strand, 39415824 - 39415975
Alignment:
Q  190 tctcttttgactcaaactccttaacttgtctttcaatgtggttctttttagattccagctccttcacctgaccatcaagttgcttctctttagaatcaag 289  Q
    |||||||||| |||| |||||| | | |  ||||||  || ||||||||||||||||| ||||| || || ||||| |||||||||||||||||| ||||    
T  39415824 tctcttttgattcaagctccttgattcggttttcaaactgcttctttttagattccagttcctttacttggccatcgagttgcttctctttagaagcaag 39415923  T
Q  290 ctcttgaagttgttctttcaacgacctcaattttgatttgagctcctccacc 341  Q
     || | ||  ||| ||||||| | | |||||||||  |||||||||||||||    
T  39415924 ttccttaaactgtcctttcaatggcatcaattttgtattgagctcctccacc 39415975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 123 - 221
Target Start/End: Complemental strand, 39451675 - 39451577
Alignment:
Q  123 tccttcagttggccttcaaattccttcttttttaatttaaactccttcagttggcctacaagttgactctcttttgactcaaactccttaacttgtctt 221  Q
    |||||||||||||||||||  ||||| |||||| ||| |||||| || | | |||| ||||||||||||||||||| |||||||||  | |||||||||    
T  39451675 tccttcagttggccttcaatctccttttttttttattcaaactcgtttactcggcccacaagttgactctcttttgtctcaaactctctcacttgtctt 39451577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 39161641 - 39161578
Alignment:
Q  16 catgcttctgttttgatagcaagtccatcatttggcattcaaactccttctcttttgattcaaa 79  Q
    ||||||||| |||||||||||||||||||||||||| |||||| |  |||| ||||||||||||    
T  39161641 catgcttctcttttgatagcaagtccatcatttggccttcaaattgtttcttttttgattcaaa 39161578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 39207553 - 39207616
Alignment:
Q  16 catgcttctgttttgatagcaagtccatcatttggcattcaaactccttctcttttgattcaaa 79  Q
    ||||||||| |||||||||||||||||||||||||| |||||| |  |||| ||||||||||||    
T  39207553 catgcttctcttttgatagcaagtccatcatttggccttcaaattgtttcttttttgattcaaa 39207616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 211
Target Start/End: Complemental strand, 39451450 - 39451251
Alignment:
Q  12 tcatcatgcttctgttttgatagcaagtccatcatttggcattcaaactccttctcttttgattcaaacatctttactttgcctacaagttcgttatctt 111  Q
    |||| ||| ||||||||| ||  ||| ||| ||||||| | ||||||||| || ||||||| |||||||  ||| |||| ||||||||||| ||| |||     
T  39451450 tcataatgtttctgttttaattccaactccttcatttgactttcaaactctttttcttttgtttcaaactccttcacttggcctacaagttggttttcta 39451351  T
Q  112 ttgattccaactccttcagttggccttcaaattccttcttttttaatttaaactccttcagttggcctacaagttgactctcttttgactcaaactcctt 211  Q
    |||| | |||| |||||| ||||| |||||| | || |||||| ||||  | |||||| | ||||||| ||| ||    ||||||||| |||||||||||    
T  39451350 ttgactgcaacaccttcaattggctttcaaagtgctcctttttaaattccagctccttgatttggccttcaactttctcctcttttgattcaaactcctt 39451251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 253
Target Start/End: Complemental strand, 39451436 - 39451293
Alignment:
Q  110 ttttgattccaactccttcagttggccttcaaattccttcttttttaatttaaactccttcagttggcctacaagttgactctcttttgactcaaactcc 209  Q
    |||| ||||||||||||||| ||| | |||||| || || | ||||  || ||||||||||| |||||||||||||||  | ||| ||||||  ||| ||    
T  39451436 ttttaattccaactccttcatttgactttcaaactctttttcttttgtttcaaactccttcacttggcctacaagttggttttctattgactgcaacacc 39451337  T
Q  210 ttaacttgtctttcaatgtggttctttttagattccagctcctt 253  Q
    || | ||| ||||||| ||| | ||||||| |||||||||||||    
T  39451336 ttcaattggctttcaaagtgctcctttttaaattccagctcctt 39451293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 154
Target Start/End: Complemental strand, 39222722 - 39222621
Alignment:
Q  53 ttcaaactccttctcttttgattcaaacatctttactttgcctacaagttcgttatcttttgattccaactccttcagttggccttcaaattccttcttt 152  Q
    |||||| |||||||| ||||||||||||  ||||| ||||| || ||||| |||||||||||| || |||||||| | ||||| |||||  | |||||||    
T  39222722 ttcaaattccttctcctttgattcaaactcctttattttgcatataagttggttatcttttgactctaactccttaacttggctttcaacctgcttcttt 39222623  T
Q  153 tt 154  Q
    ||    
T  39222622 tt 39222621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 280
Target Start/End: Original strand, 39398145 - 39398282
Alignment:
Q  143 ttccttcttttttaatttaaactccttcagttggcctacaagttgactctcttttgactcaaactccttaacttgtctttcaatgtggttctttttagat 242  Q
    |||||||| ||| ||||| |||||||||| | | |||||||||||  ||||||||||||| |||||||| | ||| ||||||| ||| |   ||||| ||    
T  39398145 ttccttctctttgaatttgaactccttcactcgtcctacaagttggttctcttttgactctaactccttcaattggctttcaaagtgctgtattttaaat 39398244  T
Q  243 tccagctccttcacctgaccatcaagttgcttctcttt 280  Q
    ||| ||||||||| ||| || |||| || || ||||||    
T  39398245 tcccgctccttcatctggccttcaaatttctcctcttt 39398282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 39415451 - 39415512
Alignment:
Q  195 tttgactcaaactccttaacttgtctttcaatgtggttctttttagattccagctccttcac 256  Q
    |||||||| |||||||| |||||||||||||  || ||||||||||||||||||||| ||||    
T  39415451 tttgactccaactcctttacttgtctttcaaattgcttctttttagattccagctccctcac 39415512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 257
Target Start/End: Original strand, 39192854 - 39192997
Alignment:
Q  114 gattccaactccttcagttggccttcaaattccttcttttttaatttaaactccttcagttggcctacaagttgactctcttttgactcaaactccttaa 213  Q
    ||||||| ||||| || | ||||||| |||||| ||| |||| ||| ||||| |||||   | ||| || ||||  |||| |||||||||| |||||| |    
T  39192854 gattccagctcctgcactcggccttccaattccgtctcttttgattcaaacttcttcacccgaccttcatgttgcatctcgtttgactcaagctccttca 39192953  T
Q  214 cttgtctttcaatgtggttctttttagattccagctccttcacc 257  Q
     ||| ||||||||||| ||||||| | |||||| ||||||||||    
T  39192954 tttggctttcaatgtgcttcttttgaaattccaactccttcacc 39192997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 257
Target Start/End: Original strand, 39198534 - 39198677
Alignment:
Q  114 gattccaactccttcagttggccttcaaattccttcttttttaatttaaactccttcagttggcctacaagttgactctcttttgactcaaactccttaa 213  Q
    ||||||| ||||| || | ||||||| |||||| ||| |||| ||| ||||| |||||   | ||| || ||||  |||| |||||||||| |||||| |    
T  39198534 gattccagctcctgcactcggccttccaattccgtctcttttgattcaaacttcttcacccgaccttcatgttgcatctcgtttgactcaagctccttca 39198633  T
Q  214 cttgtctttcaatgtggttctttttagattccagctccttcacc 257  Q
     ||| ||||||||||| ||||||| | |||||| ||||||||||    
T  39198634 tttggctttcaatgtgcttcttttgaaattccaactccttcacc 39198677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 224
Target Start/End: Original strand, 39391031 - 39391122
Alignment:
Q  133 ggccttcaaattccttcttttttaatttaaactccttcagttggcctacaagttgactctcttttgactcaaactccttaacttgtctttca 224  Q
    ||||||||||||||||||  ||||||| |  |||||||| ||||||| |||||||  ||||||| ||||||| |||||| | ||| ||||||    
T  39391031 ggccttcaaattccttctcctttaattcatgctccttcaattggccttcaagttgtttctctttggactcaagctccttcatttggctttca 39391122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 280
Target Start/End: Complemental strand, 39468068 - 39467949
Alignment:
Q  161 aaactccttcagttggcctacaagttgactctcttttgactcaaactccttaacttgtctttcaatgtggttctttttagattccagctccttcacctga 260  Q
    ||||||||||| | | ||| |||||||  ||||||||||||| |||||||| | ||| |||| |||||| |  |||||| ||||||||||||||| |||     
T  39468068 aaactccttcactcgtcctgcaagttggttctcttttgactccaactccttcaattggctttgaatgtgctgttttttaaattccagctccttcatctgg 39467969  T
Q  261 ccatcaagttgcttctcttt 280  Q
    || |||| || || ||||||    
T  39467968 ccttcaaatttctcctcttt 39467949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 39602930 - 39602839
Alignment:
Q  24 tgttttgatagcaagtccatcatttggcattcaaactccttctcttttgattcaaacatctttactttgcctacaagttcgttatcttttga 115  Q
    |||||| ||| ||| ||| || ||||| ||||||| ||||||| |||||||||||||  |||||||| || |||||||| ||||||| ||||    
T  39602930 tgttttaatatcaactccttcttttggaattcaaattccttctgttttgattcaaactcctttacttggcatacaagttggttatctattga 39602839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 267
Target Start/End: Complemental strand, 38792882 - 38792776
Alignment:
Q  161 aaactccttcagttggcctacaagttgactctcttttgactcaaactccttaacttgtctttcaatgtggttctttttagattccagctccttcacctga 260  Q
    ||||||||||| || || |||||||||  | ||||||||||| |||||||||||||| |||||||     |||| |||||||||| | |||||||| |||    
T  38792882 aaactccttcattttgcgtacaagttggttatcttttgactccaactccttaacttgcctttcaaacaatttctgtttagattcctggtccttcacttga 38792783  T
Q  261 ccatcaa 267  Q
    || ||||    
T  38792782 ccttcaa 38792776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 292
Target Start/End: Original strand, 39415106 - 39415206
Alignment:
Q  192 tcttttgactcaaactccttaacttgtctttcaatgtggttctttttagattccagctccttcacctgaccatcaagttgcttctctttagaatcaagct 291  Q
    |||||||| |||| |||||| | ||| ||||| |  || |||||||  |||||||||||||||||  |||| ||| ||||||||||||| || |||||||    
T  39415106 tcttttgattcaagctccttcagttggctttcgaaatgcttcttttctgattccagctccttcactcgaccttcatgttgcttctcttttgactcaagct 39415205  T
Q  292 c 292  Q
    |    
T  39415206 c 39415206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 108 - 219
Target Start/End: Original strand, 39192680 - 39192791
Alignment:
Q  108 tcttttgattccaactccttcagttggccttcaaattccttcttttttaatttaaactccttcagttggcctacaagttgactctcttttgactcaaact 207  Q
    |||||||| || |||||||||| ||||| |||||||  |||||||||  |||  | ||||||||||||||   |||||||  ||||||| || | ||| |    
T  39192680 tcttttgactcaaactccttcacttggcattcaaatagcttctttttagattccagctccttcagttggctatcaagttgcttctctttagagtaaaatt 39192779  T
Q  208 ccttaacttgtc 219  Q
    ||||||||||||    
T  39192780 ccttaacttgtc 39192791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 108 - 219
Target Start/End: Original strand, 39198360 - 39198471
Alignment:
Q  108 tcttttgattccaactccttcagttggccttcaaattccttcttttttaatttaaactccttcagttggcctacaagttgactctcttttgactcaaact 207  Q
    |||||||| || |||||||||| ||||| |||||||  |||||||||  |||  | ||||||||||||||   |||||||  ||||||| || | ||| |    
T  39198360 tcttttgactcaaactccttcacttggcattcaaatagcttctttttagattccagctccttcagttggctatcaagttgcttctctttagagtaaaatt 39198459  T
Q  208 ccttaacttgtc 219  Q
    ||||||||||||    
T  39198460 ccttaacttgtc 39198471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 217
Target Start/End: Original strand, 39389853 - 39389948
Alignment:
Q  122 ctccttcagttggccttcaaattccttcttttttaatttaaactccttcagttggcctacaagttgactctcttttgactcaaactccttaacttg 217  Q
    ||||| || ||||| ||||||| || ||| |||| ||| ||||||| ||| || ||||||||||||  | ||||||||||| |||||||| |||||    
T  39389853 ctcctccatttggcattcaaatcccctctcttttgattcaaactccatcattttgcctacaagttggttatcttttgactctaactccttcacttg 39389948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 225
Target Start/End: Original strand, 39390559 - 39390670
Alignment:
Q  114 gattccaactccttcagttggccttcaaattccttcttttttaatttaaactccttcagttggcctacaagttgactctcttttgactcaaactccttaa 213  Q
    |||||||  ||||||| |||||||||||||||  ||| |||| ||| |  |||||||| | ||| | || ||||  |||||||||||||||||||||| |    
T  39390559 gattccagttccttcatttggccttcaaattctctctcttttgattcatgctccttcactcggctttcatgttgcttctcttttgactcaaactccttca 39390658  T
Q  214 cttgtctttcaa 225  Q
     ||| |||||||    
T  39390659 tttggctttcaa 39390670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 38792942 - 38792832
Alignment:
Q  17 atgcttctgttttgatagcaagtccatcatttggcattcaaactccttctcttttgattcaaacatctttactttgcctacaagttcgttatcttttgat 116  Q
    ||||||||||||  ||| ||  ||| ||||||||| ||| || ||  ||||| |||| ||||||  ||| | ||||| |||||||| ||||||||||||     
T  38792942 atgcttctgtttcaataccagctccttcatttggctttcgaattctctctctattgactcaaactccttcattttgcgtacaagttggttatcttttgac 38792843  T
Q  117 tccaactcctt 127  Q
    |||||||||||    
T  38792842 tccaactcctt 38792832  T

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Target: chr2; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 39390092 - 39390154
Alignment:
Q  193 cttttgactcaaactccttaacttgtctttcaatgtggttctttttagattccagctccttca 255  Q
    |||| ||||| |||||||||||||| ||||| |  || ||||||||||||||||| |||||||    
T  39390092 ctttagactctaactccttaacttggctttcgacctgcttctttttagattccagttccttca 39390154  T

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Target: chr2; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 397
Target Start/End: Complemental strand, 39451856 - 39451779
Alignment:
Q  320 ttttgatttgagctcctccaccatgctttcgaaatgcttcgctttatattccatctccttcacacagccttcaaattc 397  Q
    |||||||||||||||||||||   |||||| |||||||||  |||| ||||||  ||||||||   ||||||||||||    
T  39451856 ttttgatttgagctcctccacttggctttcaaaatgcttctttttagattccagatccttcactttgccttcaaattc 39451779  T

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Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 39137238 - 39137190
Alignment:
Q  123 tccttcagttggccttcaaattccttcttttttaatttaaactccttca 171  Q
    ||||||||| ||||| ||||| ||||||||||| ||| |||||||||||    
T  39137238 tccttcagtcggcctgcaaatcccttcttttttgattcaaactccttca 39137190  T

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Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 39381682 - 39381730
Alignment:
Q  123 tccttcagttggccttcaaattccttcttttttaatttaaactccttca 171  Q
    ||||||| || |||||||||||||| || |||||||| |||||||||||    
T  39381682 tccttcactttgccttcaaattcctcctcttttaattgaaactccttca 39381730  T

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Target: chr2; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 39602919 - 39602851
Alignment:
Q  119 caactccttcagttggccttcaaattccttcttttttaatttaaactccttcagttggcctacaagttg 187  Q
    ||||||||||  ||||  |||||||||||||| |||| ||| ||||||||| | ||||| |||||||||    
T  39602919 caactccttcttttggaattcaaattccttctgttttgattcaaactcctttacttggcatacaagttg 39602851  T

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Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 190 - 397
Target Start/End: Complemental strand, 19807259 - 19807052
Alignment:
Q  190 tctcttttgactcaaactccttaacttgtctttcaatgtggttctttttagattccagctccttcacctgaccatcaagttgcttctctttagaatcaag 289  Q
    ||||||||||||||| |||||| | | |  ||||||  ||  ||||||||||||||||||||||||| || ||||  |||||||||||||||||  ||||    
T  19807259 tctcttttgactcaagctccttgattcggttttcaaactgcctctttttagattccagctccttcacttggccattgagttgcttctctttagaggcaag 19807160  T
Q  290 ctcttgaagttgttctttcaacgacctcaattttgatttgagctcctccaccatgctttcgaaatgcttcgctttatattccatctccttcacacagcct 389  Q
    ||| | ||||||| ||||||| | | |||||||||  |||||||||||||||  ||||| ||||||| || ||||| |||||| ||| ||||| | ||||    
T  19807159 ctccttaagttgtcctttcaatggcatcaattttgtattgagctcctccacctcgcttttgaaatgcctctctttagattccagctcattcactcggcct 19807060  T
Q  390 tcaaattc 397  Q
    ||||||||    
T  19807059 tcaaattc 19807052  T

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