View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3629_low_11 (Length: 416)
Name: NF3629_low_11
Description: NF3629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3629_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 10 - 398
Target Start/End: Complemental strand, 14178222 - 14177834
Alignment:
| Q |
10 |
aagaatatatctcatatttcccaaatctgtcatggaaaactttccctttatagaatgcttgaaagtttcaaacatagtaacatcattttcagtatatatg |
109 |
Q |
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||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
14178222 |
aagaaaatatctcatatttcccaaatctgtcatagcaaactttccctttatagaatgcttgaaagtttcaaacacagtaacatcattttcagtatatatg |
14178123 |
T |
|
| Q |
110 |
agatcatccatataccagctaacaattaacagtttccctccagattcattcttaacaaataaggtgtcttcatgagagcatttcataaatttttcttgaa |
209 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
14178122 |
agatcatccatataccggctaacaattaacagtttccctccagattcattcttaacaaataaggtgtgttcatgagagcatttcataaatttttcttgaa |
14178023 |
T |
|
| Q |
210 |
taaagtaagattatgtcttagtgtacgtctcataccatacatagctttctttagtttgcataccacgcttgtatcatcattctgataacctaaagttagc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
14178022 |
taaagtaagattatgtcttagtgtacgtctcataccatacatagctttctttagtttgcatacctcgcttgtatcatcattctgataacctaaaggtagc |
14177923 |
T |
|
| Q |
310 |
tccacatacacatcttcaaccagctctgcatgaagaaaaacacttttaacatctagctgataaacatttcatcctttgcatgctgcaac |
398 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14177922 |
tccacatacatatcttcaaccagctctgcatgaagaaaaacacttttaacatctagctgataaacatttcatcctttgcatgctgcaac |
14177834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 221
Target Start/End: Complemental strand, 20531305 - 20531262
Alignment:
| Q |
178 |
ttcatgagagcatttcataaatttttcttgaataaagtaagatt |
221 |
Q |
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| T |
20531305 |
ttcatgagagcatttcataaaattttcttgagcaaagtaagatt |
20531262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 76 - 221
Target Start/End: Original strand, 3013022 - 3013167
Alignment:
| Q |
76 |
ttcaaacatagtaacatcattttcagtatatatgagatcatccatataccagctaacaattaacagtttccctccagattcattcttaacaaataaggtg |
175 |
Q |
| |
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||||||||||| |||||||| | | || ||||| |||||||||| | | |||||| |||| || ||||||| |||| | |||||| ||||| ||||| |
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| T |
3013022 |
ttcaaacatagcaacatcatctcctgtgtatataagatcatccacaatcaggctaactattagcattttcccttcagagttattcttcacaaacaaggta |
3013121 |
T |
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| Q |
176 |
tcttcatgagagcatttcataaatttttcttgaataaagtaagatt |
221 |
Q |
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| T |
3013122 |
tgttcatgagagcatttcatgaaattttcttgagcaaagtaagatt |
3013167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 278 - 400
Target Start/End: Original strand, 40610824 - 40610946
Alignment:
| Q |
278 |
ttgtatcatcattctgataacctaaagttagctccacatacacatcttcaaccagctctgcatgaagaaaaacacttttaacatctagctgataaacatt |
377 |
Q |
| |
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||||||| || || || |||||||||| | |||||||||| |||||||||| | |||| |||| |||||| |||| || ||||| |||||||| || || |
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| T |
40610824 |
ttgtatcttccttttggtaacctaaaggttgctccacatagacatcttcaattaactctccatgcagaaaagcactcttgacatcaagctgatacacttt |
40610923 |
T |
|
| Q |
378 |
tcatcctttgcatgctgcaactg |
400 |
Q |
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||||||||||| |||||||||| |
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| T |
40610924 |
ccatcctttgcaagctgcaactg |
40610946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 295 - 397
Target Start/End: Complemental strand, 20544480 - 20544378
Alignment:
| Q |
295 |
taacctaaagttagctccacatacacatcttcaaccagctctgcatgaagaaaaacacttttaacatctagctgataaacatttcatcctttgcatgctg |
394 |
Q |
| |
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|||||||||| | ||||||||||||||||||||| | |||| |||| |||||| |||| || ||||| |||||||| || || || |||||||| |||| |
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| T |
20544480 |
taacctaaaggttgctccacatacacatcttcaattaactctccatgcagaaaagcactcttgacatcaagctgatacacgttccaacctttgcaagctg |
20544381 |
T |
|
| Q |
395 |
caa |
397 |
Q |
| |
|
||| |
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|
| T |
20544380 |
caa |
20544378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 401
Target Start/End: Original strand, 10782041 - 10782123
Alignment:
| Q |
319 |
acatcttcaaccagctctgcatgaagaaaaacacttttaacatctagctgataaacatttcatcctttgcatgctgcaactga |
401 |
Q |
| |
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||||||||||| || ||| |||| | |||| ||||||| |||||||||||||| ||||| || | |||||||| |||||||| |
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| T |
10782041 |
acatcttcaactagttctccatgtaaaaaagcactttttacatctagctgatacacattccaactcttgcatgcagcaactga |
10782123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 397
Target Start/End: Original strand, 5145062 - 5145183
Alignment:
| Q |
276 |
gcttgtatcatcattctgataacctaaagttagctccacatacacatcttcaaccagctctgcatgaagaaaaacacttttaacatctagctgataaaca |
375 |
Q |
| |
|
||||||||| || |||| ||| ||||| | | |||| | ||| ||| |||||| ||||| |||||||||| || |||||||||| ||||||||||| |
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| T |
5145062 |
gcttgtatcttctttctaatagcctaagggttgctctagatatacaacttcaattagctcaccatgaagaaactcatttttaacatcaagctgataaacc |
5145161 |
T |
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| Q |
376 |
tttcatcctttgcatgctgcaa |
397 |
Q |
| |
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|| || ||||| |||||||||| |
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| T |
5145162 |
ttccaacctttacatgctgcaa |
5145183 |
T |
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