View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3629_low_12 (Length: 413)
Name: NF3629_low_12
Description: NF3629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3629_low_12 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 13 - 413
Target Start/End: Complemental strand, 6289185 - 6288785
Alignment:
| Q |
13 |
gagacaagagtatgagaagaagaacggaaagatgagtcgatccggagaactctctgaaaagccaattcttccaagcatccagaccaactgaagcaagagt |
112 |
Q |
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| T |
6289185 |
gagacaagagtatgagaagaagaacggaaagatgagtcgatccggagaactttctgaaaagccaattcttccaagcatccagaccagctgaagcaagagt |
6289086 |
T |
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| Q |
113 |
acaacaagcagaaagaaattattgtacctgaaaaactattagtaaagaaaacacctcttttgctgctagtgtgagagtcttaaccttagattctttatat |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6289085 |
acaacaagcagaaagaaattattgtacctgaaaaactattagtaaagcaaacacctcttttgctgctagtgtgagaatcttaaccttagattctttatat |
6288986 |
T |
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| Q |
213 |
gtgaccatatgccacattctttgtacagttatattagttatgtcgattcttatcatctaattgtgttcttaggcatataagtgagtgtgaaagtattttg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6288985 |
gtgaccatatgccacattctttgtacagttatattagttatgtcgattcttatcatctaattgtgttcttaggcatatcagtgagtgtgaaagtattttg |
6288886 |
T |
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| Q |
313 |
tatatctgaagactgatatgggtcttttgagtcggttcattcttcttgtttcctacaatgtaaagaatgaaattgtcgtagaaattgtgattattgttct |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6288885 |
tatatctgaagactgatatgggtcttttgagtcggttcattcttcttgtttcctacaatgtaaagaatgaaattgtcgtagaaattgtgattattgttct |
6288786 |
T |
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| Q |
413 |
t |
413 |
Q |
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| T |
6288785 |
t |
6288785 |
T |
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