View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3629_low_17 (Length: 377)
Name: NF3629_low_17
Description: NF3629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3629_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 44221435 - 44221782
Alignment:
| Q |
18 |
acgtttgaaatctcaaatcatttaactatttaagtttataacgactaatgcatttgtcactacttgatttgtcgtccatgtcaatttcataattcacttt |
117 |
Q |
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| T |
44221435 |
acgtttgaaatctcaaatcatttaactatttaagtttataatgactaatgcatttgtcactacttgatttgtcgtccatgtcaatttcataattcacttt |
44221534 |
T |
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| Q |
118 |
caataaaaatttaagagtggctaaacagtggtatgtcaaaaacaacaatgataatatagcaaaatgttatggccaaatttaacattgcaatgactatacc |
217 |
Q |
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| T |
44221535 |
caataaaaatttaagagtggctaaacagtggtatgtcaaaaacaacaatgataatatagcaaaatgttatggccaaatttaacattgcaatgactatacc |
44221634 |
T |
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| Q |
218 |
ttttaagcnnnnnnngaacttgttccatcccctctagttatcaccctcgtgaattatgtttgtannnnnnnnatcctgaccccccttttcagccccaaaa |
317 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
44221635 |
ttttaagctttttttgaacttgttccatcccctctagttatcaccctcgtgaattatgtttgtattttttttatcctga-cccccttttcagccccaaaa |
44221733 |
T |
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| Q |
318 |
gtatggcaaaatgtttggatgcacaagtgtggtaaataattagcttcat |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44221734 |
gtatggcaaaatgtttggatgcacaagtgtggtaaataattagcttcat |
44221782 |
T |
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