View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3629_low_2 (Length: 900)
Name: NF3629_low_2
Description: NF3629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3629_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 844; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 844; E-Value: 0
Query Start/End: Original strand, 1 - 884
Target Start/End: Complemental strand, 47422962 - 47422079
Alignment:
| Q |
1 |
atccattgaccttttcttcttattcacaacaatatcctttgtctttttaaaatacttatttatgttttcccatttttctttacacctctttgcacttctc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47422962 |
atccattgaccttttcttcttattcacaacaatatcctttgtctttttaaaatacttatttatgttttcccatttttctttacacctctttgcgcttctc |
47422863 |
T |
|
| Q |
101 |
ttgtatcccaactcaaacatcccttcagagattctctcccacaaaggtcccttattactatttccttcaacattattgttgcttctgtttattacacttg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47422862 |
ttgtatcccaactcaaacatcccttcagagattctctcccacaaaggtcccttattactatttccttcaacattattgttgcttctgtttattacacttg |
47422763 |
T |
|
| Q |
201 |
tagtagacttgaggtttatgagtgccaacacttcatctcttggccaccttctcctatcctctaatttctccattattgtaggcacaacaagggtagaagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47422762 |
tagtagacttgaggtttatgagtgccaacacttcatctcttggccaccttctcctatcctctaatttctccattattgtaggcacaacaagggtagaagt |
47422663 |
T |
|
| Q |
301 |
ggaatttgagtactctgtgtcacttgagctagggttttgatctgctatcacattagaaaaaggtgtttttgattctagattgttagaaggattactaggg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47422662 |
ggaatttgagtactctgtgtcacttgagctagggttttgatctgctatcacattagaaaaaggtgtttttgattctagattgttagaaggattattaggg |
47422563 |
T |
|
| Q |
401 |
ttttgtgggtgcaattgtgtagaagaagaagaagaatatcccgtggctagatatttgttcaagaattcaatgatgttggcttgtctatcacttgcaatag |
500 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47422562 |
ttttgtgggtgcaattgtgtagaagaagaagaagaatatcctgtggctagatatttgttcaagaattcaatgatgttggcttgtctatcacttgcaatag |
47422463 |
T |
|
| Q |
501 |
cttgttgttcttgtaccatcatgttcatcctttcaatctcttgttttttccatgtttcctctctatcaagcttttcttgatctcttttgagcatgtcttc |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47422462 |
cttgttgttcttgtaccatcatgttcatcctttcaatctcttgttttttccatgtttcctctctatcaagcttttcttgatctcttttgagcatgtcttc |
47422363 |
T |
|
| Q |
601 |
aagtagcttattgtgtatttcttcttgttgtgctattattttgttaaccactgtctcacaaaaactcttcaacatttcaaatctatcacggcgcctcttc |
700 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47422362 |
aagtagcttattgtgtatttcttcttgttgtgctattattttattaaccactgtctcacaaaaactcttcaacatttcaaatctatcacggcgcctcttc |
47422263 |
T |
|
| Q |
701 |
ctctttttgttctttgatttctccatcctcaccttgtcgttatcatcatcacattgcttggtctctactctatcatcttcttcgtgttgggtgttttcgt |
800 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
47422262 |
ctctttttgttctttgatttctccatcctcaccttgtcgtcatcatcatcacattgcttggtctctaatctatcatcttcttcgagttgggtgttttcgt |
47422163 |
T |
|
| Q |
801 |
caacactaacaccaccaccttgataaagatcttgaagctcgctaacgaaccggggggaaaatgatgcattctcatgttcaaact |
884 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
47422162 |
caacactaaaaccaccaccttgataaagatcttgaagctcgctaacgaaccgggggaaaaatgatgcgttctcatgttcaaact |
47422079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 536 - 688
Target Start/End: Original strand, 36127974 - 36128126
Alignment:
| Q |
536 |
atctcttgttttttccatgtttcctctctatcaagcttttcttgatctcttttgagcatgtcttcaagtagcttattgtgtatttcttcttgttgtgcta |
635 |
Q |
| |
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||||||||||| ||||| | ||| |||||| || ||| |||| ||||||||| | ||| ||||||| ||||| ||||| |||||||||||||| | | |
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| T |
36127974 |
atctcttgtttcttccaagcttcttctctactaaacttctcttcatctcttttaaccatatcttcaataagcttgttgtgcatttcttcttgttgatcca |
36128073 |
T |
|
| Q |
636 |
ttattttgttaaccactgtctcacaaaaactcttcaacatttcaaatctatca |
688 |
Q |
| |
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| ||||| || || || |||||||||||| ||| |||| ||||||||||||| |
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| T |
36128074 |
tcattttctttacaacactctcacaaaaacccttaaacacttcaaatctatca |
36128126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 141
Target Start/End: Original strand, 36127406 - 36127513
Alignment:
| Q |
34 |
atcctttgtctttttaaaatacttatttatgttttcccatttttctttacacctctttgcacttctcttgtatcccaactcaaacatcccttcagagatt |
133 |
Q |
| |
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||||||||| ||| | |||||||| || || || ||||| || ||||| || ||||||||||||||||||||||| ||||| ||||| |||| || ||| |
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| T |
36127406 |
atcctttgtttttctgaaatacttgttgatattctcccacttctctttgcatctctttgcacttctcttgtatcctaactccaacattccttgtgaaatt |
36127505 |
T |
|
| Q |
134 |
ctctccca |
141 |
Q |
| |
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|||||||| |
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|
| T |
36127506 |
ctctccca |
36127513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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