View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3629_low_24 (Length: 304)

Name: NF3629_low_24
Description: NF3629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3629_low_24
NF3629_low_24
[»] chr4 (1 HSPs)
chr4 (18-304)||(56019917-56020203)


Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 56020203 - 56019917
Alignment:
Q  18 tctcccatatctgaatcaaccgagagaatttatgcataaggttgaccctcttttgcaaggacacttccccaaccgaggtctgcgtcgtctgcttttaata 117  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56020203 tctcccatatctgaatgaaccgagagaatttatgcataaggttgaccctcttttgcaaggacacttccccaaccgaggtctgcgtcgtctgcttttaata 56020104  T
Q  118 attgatatgtgtctccgggagaatccaagagaacgtccaaccattggtgaaattgttgatgcactaaaatacttatcttccaagagtacctctaaagtct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56020103 attgatatgtgtctccgggagaatccaagagaacgtccaaccattggtgaaattgttgatgcactaaaatacttatcttccaagagtacctctaaagtct 56020004  T
Q  218 ataaacatggggtgcgtagctaaccgttgcaaccacatttcaaaccagacagaagttaatttacataggtataagattctaggttgt 304  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  56020003 ataaacatgggttgcgcagctaaccgttgcaaccacatttcaaaccagacagaagttaatatacttaggtataagattctaggttgt 56019917  T

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