View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3629_low_32 (Length: 247)

Name: NF3629_low_32
Description: NF3629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3629_low_32
NF3629_low_32
[»] chr8 (14 HSPs)
chr8 (136-247)||(34336202-34336313)
chr8 (142-227)||(12506014-12506099)
chr8 (138-226)||(79439-79527)
chr8 (138-231)||(29584348-29584441)
chr8 (138-186)||(13369776-13369824)
chr8 (142-229)||(36837314-36837401)
chr8 (138-229)||(43239900-43239986)
chr8 (142-224)||(6943286-6943368)
chr8 (142-230)||(41865451-41865538)
chr8 (201-230)||(4873400-4873429)
chr8 (138-191)||(21173712-21173765)
chr8 (146-231)||(23932362-23932447)
chr8 (201-237)||(33230854-33230890)
chr8 (198-230)||(38676393-38676425)
[»] chr7 (18 HSPs)
chr7 (138-230)||(38505159-38505251)
chr7 (138-227)||(33871778-33871867)
chr7 (142-211)||(2826082-2826151)
chr7 (141-229)||(6746398-6746485)
chr7 (142-228)||(35264708-35264794)
chr7 (142-227)||(4057964-4058049)
chr7 (150-227)||(16805385-16805462)
chr7 (138-229)||(23465816-23465907)
chr7 (170-227)||(34670526-34670583)
chr7 (146-227)||(42254150-42254231)
chr7 (138-230)||(30081146-30081239)
chr7 (142-183)||(13044326-13044367)
chr7 (142-227)||(32650209-32650294)
chr7 (199-232)||(33406813-33406846)
chr7 (199-232)||(33872235-33872268)
chr7 (144-223)||(22394332-22394410)
chr7 (195-227)||(22556523-22556555)
chr7 (168-232)||(36747504-36747568)
[»] chr1 (25 HSPs)
chr1 (140-227)||(14439746-14439833)
chr1 (142-230)||(24369078-24369166)
chr1 (142-230)||(34154153-34154241)
chr1 (138-232)||(36887043-36887137)
chr1 (138-231)||(69905-69998)
chr1 (142-229)||(4204595-4204682)
chr1 (142-230)||(2909295-2909383)
chr1 (142-227)||(37649434-37649519)
chr1 (142-223)||(50226209-50226290)
chr1 (142-225)||(37875572-37875655)
chr1 (142-229)||(52067963-52068050)
chr1 (146-224)||(666459-666537)
chr1 (138-224)||(38795233-38795319)
chr1 (196-233)||(12293676-12293713)
chr1 (142-187)||(29092261-29092306)
chr1 (201-236)||(4204949-4204984)
chr1 (138-229)||(5584679-5584775)
chr1 (138-223)||(5883426-5883511)
chr1 (142-227)||(17760303-17760388)
chr1 (199-232)||(43036136-43036169)
chr1 (195-228)||(45752072-45752105)
chr1 (138-231)||(49102789-49102882)
chr1 (201-229)||(666251-666279)
chr1 (152-200)||(33324812-33324860)
chr1 (146-230)||(46001748-46001832)
[»] chr3 (23 HSPs)
chr3 (142-227)||(34280665-34280750)
chr3 (138-227)||(3537380-3537469)
chr3 (142-235)||(50534917-50535010)
chr3 (138-228)||(51686680-51686770)
chr3 (142-227)||(44400877-44400962)
chr3 (142-229)||(37673969-37674056)
chr3 (142-228)||(25753930-25754015)
chr3 (142-208)||(47359492-47359558)
chr3 (138-227)||(5939599-5939688)
chr3 (150-227)||(35989269-35989346)
chr3 (142-227)||(48908710-48908795)
chr3 (138-230)||(36598417-36598508)
chr3 (146-227)||(33944458-33944539)
chr3 (138-223)||(34729161-34729245)
chr3 (142-227)||(38639757-38639842)
chr3 (142-225)||(27197425-27197508)
chr3 (138-197)||(33900563-33900622)
chr3 (143-230)||(45570759-45570846)
chr3 (142-181)||(49183863-49183902)
chr3 (142-227)||(53664426-53664512)
chr3 (199-231)||(36185224-36185256)
chr3 (203-235)||(39115144-39115176)
chr3 (201-229)||(49183562-49183590)
[»] chr5 (13 HSPs)
chr5 (142-233)||(14569860-14569953)
chr5 (138-227)||(35683291-35683380)
chr5 (142-230)||(39649749-39649837)
chr5 (142-229)||(10955505-10955592)
chr5 (138-229)||(13569536-13569627)
chr5 (138-227)||(5772548-5772637)
chr5 (142-230)||(10843212-10843300)
chr5 (138-229)||(38568195-38568286)
chr5 (151-214)||(39027927-39027990)
chr5 (138-226)||(10438150-10438242)
chr5 (195-229)||(11168458-11168492)
chr5 (155-228)||(18671139-18671210)
chr5 (201-230)||(35708936-35708965)
[»] scaffold0119 (2 HSPs)
scaffold0119 (138-219)||(37296-37377)
scaffold0119 (138-216)||(30628-30706)
[»] chr6 (7 HSPs)
chr6 (138-227)||(12779687-12779776)
chr6 (142-230)||(32719114-32719202)
chr6 (138-213)||(24849381-24849456)
chr6 (165-227)||(28551725-28551787)
chr6 (138-186)||(33590188-33590236)
chr6 (185-231)||(14201820-14201866)
chr6 (152-225)||(20820354-20820427)
[»] scaffold0263 (1 HSPs)
scaffold0263 (146-223)||(5807-5884)
[»] chr2 (23 HSPs)
chr2 (138-227)||(21626299-21626388)
chr2 (142-227)||(37194445-37194530)
chr2 (138-216)||(1270531-1270609)
chr2 (138-227)||(13018296-13018385)
chr2 (142-227)||(43572362-43572447)
chr2 (138-230)||(11515218-11515310)
chr2 (138-229)||(7367752-7367843)
chr2 (138-225)||(30072265-30072352)
chr2 (142-193)||(34757784-34757835)
chr2 (138-227)||(1364997-1365086)
chr2 (150-223)||(15234694-15234767)
chr2 (142-237)||(31082979-31083071)
chr2 (165-222)||(35549982-35550039)
chr2 (142-230)||(40212181-40212269)
chr2 (146-227)||(41099933-41100014)
chr2 (142-186)||(26905988-26906032)
chr2 (142-220)||(39205195-39205273)
chr2 (196-233)||(16519266-16519303)
chr2 (199-232)||(16625627-16625660)
chr2 (199-232)||(18780249-18780282)
chr2 (199-232)||(44137024-44137057)
chr2 (142-230)||(28539242-28539330)
chr2 (138-230)||(41655222-41655314)
[»] chr4 (21 HSPs)
chr4 (142-229)||(29114059-29114146)
chr4 (142-229)||(38136650-38136737)
chr4 (150-227)||(22165584-22165661)
chr4 (150-227)||(49667934-49668011)
chr4 (142-228)||(30198588-30198674)
chr4 (142-227)||(41708936-41709021)
chr4 (142-224)||(12708655-12708737)
chr4 (146-230)||(16461542-16461627)
chr4 (144-224)||(30862996-30863077)
chr4 (138-227)||(33500695-33500784)
chr4 (198-230)||(47063575-47063607)
chr4 (189-229)||(55510129-55510169)
chr4 (159-214)||(28175294-28175349)
chr4 (168-231)||(35959371-35959434)
chr4 (142-180)||(368236-368274)
chr4 (177-223)||(15490110-15490156)
chr4 (177-223)||(15498619-15498665)
chr4 (139-232)||(16318792-16318886)
chr4 (138-224)||(50784179-50784265)
chr4 (177-237)||(15478861-15478921)
chr4 (201-229)||(42650869-42650897)
[»] scaffold0128 (1 HSPs)
scaffold0128 (142-228)||(26559-26645)
[»] scaffold0179 (1 HSPs)
scaffold0179 (142-227)||(1022-1107)
[»] scaffold0051 (2 HSPs)
scaffold0051 (142-227)||(3386-3471)
scaffold0051 (142-227)||(509-594)
[»] scaffold0388 (1 HSPs)
scaffold0388 (138-230)||(7245-7337)
[»] scaffold0031 (1 HSPs)
scaffold0031 (142-186)||(93365-93409)
[»] scaffold0024 (1 HSPs)
scaffold0024 (138-206)||(44816-44884)
[»] scaffold0991 (1 HSPs)
scaffold0991 (142-224)||(484-567)
[»] scaffold0053 (1 HSPs)
scaffold0053 (138-231)||(29418-29511)


Alignment Details
Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 136 - 247
Target Start/End: Original strand, 34336202 - 34336313
Alignment:
Q  136 acaaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagccttagtgaat 235  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34336202 acaaaatttgaaagatttctccatttttcctcatattttccacccctcaaagtcttccattctcctcccctccaaactcacaaacaaagccttagtgaat 34336301  T
Q  236 ttctgcaatttt 247  Q
    ||||||||||||    
T  34336302 ttctgcaatttt 34336313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 12506099 - 12506014
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||  ||| ||||||||||||| || ||||||||||||    
T  12506099 tttgaaagatttctccattttttcttatattttccacccctcaaaaccttctcttcccctcccctccaaattcgcaaacaaagcct 12506014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 79527 - 79439
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcc 226  Q
    |||| ||||||||||||||||||||  |||||||||||||| |||||||  ||||| ||| |||||||||||||||| |||||||||||    
T  79527 aaaaattgaaagatttctccattttccctcatattttccactcctcaaagccttcccttcccctcccctccaaactcgcaaacaaagcc 79439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 29584348 - 29584441
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagccttagt 231  Q
    |||||||||||||||||| ||||||  ||| ||||||||||||||||||  ||| | ||| ||| |||||||||||| ||||||||||||||||    
T  29584348 aaaatttgaaagatttcttcattttccctcgtattttccacccctcaaagcctttccttccccttccctccaaactcgcaaacaaagccttagt 29584441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 13369824 - 13369776
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaa 186  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  13369824 aaaatttgaaagatttctcaattttctctcatattttccacccctcaaa 13369776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 229
Target Start/End: Complemental strand, 36837401 - 36837314
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcctta 229  Q
    ||||||||||||||| |||||| |||||||||| ||||||||||| |||| | ||  | |||||||||||||| || |||||| ||||    
T  36837401 tttgaaagatttctctatttttcctcatattttgcacccctcaaagtctttcctttccttcccctccaaactcccagacaaagtctta 36837314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 229
Target Start/End: Original strand, 43239900 - 43239986
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcctta 229  Q
    |||| ||||||||||||||||||||  |||||||||| || || |||||| |||||||     |||||||||||||| ||||||||| ||||    
T  43239900 aaaaattgaaagatttctccattttccctcatatttttcaaccttcaaaaccttccat-----tcccctccaaactctcaaacaaagtctta 43239986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 6943368 - 6943286
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaag 224  Q
    |||||||||||| |||  |||  |||||||||||||| |||||||  |||| |||  |||||||||||||||| |||||||||    
T  6943368 tttgaaagatttatccggtttccctcatattttccacacctcaaagccttcaatttccctcccctccaaactctcaaacaaag 6943286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 41865538 - 41865451
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagccttag 230  Q
    |||||||||||||| ||||||  |||||||||| ||||| |||||   |||  ||| |||||| |||||||||||||||||| ||||||    
T  41865538 tttgaaagatttcttcattttccctcatatttttcaccc-tcaaagcattcatttcccctcccatccaaactcacaaacaaaaccttag 41865451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 230
Target Start/End: Original strand, 4873400 - 4873429
Alignment:
Q  201 tcccctccaaactcacaaacaaagccttag 230  Q
    ||||||||||||||||||||||||||||||    
T  4873400 tcccctccaaactcacaaacaaagccttag 4873429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 21173765 - 21173712
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatctt 191  Q
    |||||||| |||||||||| ||||||  ||||||||| ||||||||||| ||||    
T  21173765 aaaatttgtaagatttctctatttttcttcatattttgcacccctcaaagtctt 21173712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 231
Target Start/End: Complemental strand, 23932447 - 23932362
Alignment:
Q  146 aaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagccttagt 231  Q
    ||||||||||| ||||||  ||||||||| |||||||||||  ||| | ||  | ||||||| |||||| ||||||||||| ||||    
T  23932447 aaagatttctctatttttcttcatattttgcacccctcaaagcctttcctttccttcccctcaaaactcccaaacaaagccatagt 23932362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 33230890 - 33230854
Alignment:
Q  201 tcccctccaaactcacaaacaaagccttagtgaattt 237  Q
    |||||||||||||| |||||||||||| |||||||||    
T  33230890 tcccctccaaactcccaaacaaagcctcagtgaattt 33230854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 230
Target Start/End: Original strand, 38676393 - 38676425
Alignment:
Q  198 tcctcccctccaaactcacaaacaaagccttag 230  Q
    ||||||||||||||||| |||||||||||||||    
T  38676393 tcctcccctccaaactcgcaaacaaagccttag 38676425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 138 - 230
Target Start/End: Complemental strand, 38505251 - 38505159
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagccttag 230  Q
    |||||||||||||||||||||||||  |||| |||||||||||||||||  ||||| ||| |||||||||||||||| |||||||||||||||    
T  38505251 aaaatttgaaagatttctccattttccctcaaattttccacccctcaaagccttcccttcccctcccctccaaactcccaaacaaagccttag 38505159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 227
Target Start/End: Complemental strand, 33871867 - 33871778
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    ||||||| ||||||||||| |||||  | ||||||||||||||||||||  ||||| ||| |||||||||||||||| ||||||||||||    
T  33871867 aaaatttaaaagatttctcaattttcccacatattttccacccctcaaagccttcccttcccctcccctccaaactcgcaaacaaagcct 33871778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 2826151 - 2826082
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||| |||||   |||| ||| |||||||||||||    
T  2826151 tttgaaagatttctccattttttctcatattttccacccttcaaagctttcccttcccctcccctccaaa 2826082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 229
Target Start/End: Complemental strand, 6746485 - 6746398
Alignment:
Q  141 atttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcctta 229  Q
    ||||||||||||||||||||||  | ||||||||| ||||| ||||| | ||||||| ||| |||| ||||||| ||||||||||||||    
T  6746485 atttgaaagatttctccattttcccccatattttcgaccccccaaaaccctccattcccct-cccttcaaactcccaaacaaagcctta 6746398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 35264794 - 35264708
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcctt 228  Q
    ||||||||||||||| |||||   |||||||||||||||||||||   || | ||| |||||||||||||||  |||||||||||||    
T  35264794 tttgaaagatttctctattttccttcatattttccacccctcaaagcatttccttcacctcccctccaaactatcaaacaaagcctt 35264708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 4058049 - 4057964
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    ||||||||||||||| |||||| |||||||||| ||||||||||| ||||   ||  | |||||||||||||  ||||||||||||    
T  4058049 tttgaaagatttctctatttttcctcatattttgcacccctcaaagtcttttctttccttcccctccaaacttccaaacaaagcct 4057964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 16805462 - 16805385
Alignment:
Q  150 atttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    ||||||| |||||| |||||||||| ||||||||||| |||| | ||  | |||||||||||||| ||||||||||||    
T  16805462 atttctctatttttcctcatattttgcacccctcaaagtctttcttttccttcccctccaaactcccaaacaaagcct 16805385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 229
Target Start/End: Complemental strand, 23465907 - 23465816
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcctta 229  Q
    ||||| ||||||||||  |||||||  |  |||||| | |||| ||||| |||||| ||| |||||||||||||||| ||||||||||||||    
T  23465907 aaaatgtgaaagattttaccattttcccctatatttccaacccttcaaagtcttcccttcccctcccctccaaactcccaaacaaagcctta 23465816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 34670526 - 34670583
Alignment:
Q  170 attttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    |||||||||||||||||||||||  |||  ||| ||||||||||| ||||||||||||    
T  34670526 attttccacccctcaaaatcttctcttcctctctcctccaaactctcaaacaaagcct 34670583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 42254150 - 42254231
Alignment:
Q  146 aaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    ||||||||||| ||||||  ||||||||| |||||||||||  ||| | ||  | |||||||||||||| ||||||||||||    
T  42254150 aaagatttctctatttttcttcatattttacacccctcaaagcctttcctttccttcccctccaaactcccaaacaaagcct 42254231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 230
Target Start/End: Original strand, 30081146 - 30081239
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctc--ctcccctccaaactcacaaacaaagccttag 230  Q
    |||| |||||||||||||| |||||| ||||||||||||| |||| |||  ||||| ||| |  |||||||| |||||| |||| ||||||||||    
T  30081146 aaaaattgaaagatttctcaatttttcctcatattttcca-cccttaaagacttcccttcccctctcccctctaaactcccaaataaagccttag 30081239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 13044326 - 13044367
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctc 183  Q
    |||||| |||||||||||||| ||||||||||| ||||||||    
T  13044326 tttgaaggatttctccattttctctcatatttttcacccctc 13044367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 32650294 - 32650209
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    |||| ||||||| || ||||||  ||||||||| ||||||||||| |||| | ||  | |||||| ||||||| ||||||||||||    
T  32650294 tttgtaagatttatctatttttcttcatattttgcacccctcaaagtctttcctttccttccccttcaaactcgcaaacaaagcct 32650209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 232
Target Start/End: Original strand, 33406813 - 33406846
Alignment:
Q  199 cctcccctccaaactcacaaacaaagccttagtg 232  Q
    |||||||||||||||| |||||||||||||||||    
T  33406813 cctcccctccaaactcccaaacaaagccttagtg 33406846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 232
Target Start/End: Original strand, 33872235 - 33872268
Alignment:
Q  199 cctcccctccaaactcacaaacaaagccttagtg 232  Q
    |||||||||||||||| |||||||||||||||||    
T  33872235 cctcccctccaaactcgcaaacaaagccttagtg 33872268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 22394332 - 22394410
Alignment:
Q  144 tgaaagatttctccattttttctcatattttccacccctcaaaa-tcttccattctcctcccctccaaactcacaaacaaa 223  Q
    |||||||||||| ||||||| || |||||||||||||||||||| ||| |||| || ||| |||| |||||| ||||||||    
T  22394332 tgaaagatttcttcattttt-cttatattttccacccctcaaaactctcccatcct-ctctcctctaaactcccaaacaaa 22394410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 22556555 - 22556523
Alignment:
Q  195 ttctcctcccctccaaactcacaaacaaagcct 227  Q
    ||||||||||||||||||| |||||||||||||    
T  22556555 ttctcctcccctccaaacttacaaacaaagcct 22556523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 36747504 - 36747568
Alignment:
Q  168 atattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagccttagtg 232  Q
    |||||| | ||||||||||| | ||| ||| | |||||||||||||| ||||||||| |||||||    
T  36747504 atatttccaacccctcaaaaccctcctttcccttcccctccaaactctcaaacaaagacttagtg 36747568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 14439746 - 14439833
Alignment:
Q  140 aatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||| |||||| ||  |||||||||||||||| ||||||||||||    
T  14439746 aatttgaaagatttctccatttttcctcatatttttcacccctcaaagtcttccgtttccctcccctccaaactcgcaaacaaagcct 14439833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 24369166 - 24369078
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagccttag 230  Q
    |||||||||||||||||||||| ||| |||||| ||||||||||| |||||| |||  |||||||| ||||||||||||||||||||||    
T  24369166 tttgaaagatttctccatttttcctcgtattttgcacccctcaaagtcttcccttcctctcccctctaaactcacaaacaaagccttag 24369078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 34154241 - 34154153
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagccttag 230  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||| | ||  | |||||||||||||| |||||||||||||||    
T  34154241 tttgaaagatttctctattttttctcatattttgcacccctcaaaatctttcctttccttcccctccaaactcccaaacaaagccttag 34154153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 232
Target Start/End: Original strand, 36887043 - 36887137
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagccttagtg 232  Q
    |||||||||||||||||| ||||||  ||| |||||||||||||||||| |||| | ||| ||| |||||||||||| |||||||||||||||||    
T  36887043 aaaatttgaaagatttcttcattttccctcgtattttccacccctcaaagtctttccttccccttccctccaaactcgcaaacaaagccttagtg 36887137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 69905 - 69998
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagccttagt 231  Q
    |||| ||||||||||||| ||||||  |||||||||| |||||||||||||||| | |||  |||||||||||| ||||||||||||| |||||    
T  69905 aaaaattgaaagatttcttcattttccctcatatttttcacccctcaaaatctttccttcctctcccctccaaattcacaaacaaagcattagt 69998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 229
Target Start/End: Complemental strand, 4204682 - 4204595
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcctta 229  Q
    |||||||||||||||||||||  ||| || |||||||| ||||||  ||||||||||  |||||||||||||| ||||||||||||||    
T  4204682 tttgaaagatttctccattttccctcgtaatttccacctctcaaagccttccattctattcccctccaaactcccaaacaaagcctta 4204595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 2909295 - 2909383
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagccttag 230  Q
    |||||||||| |||| ||||||||||||||||| |||||||||||  ||| | ||  | |||||||||||||| |||||||||||||||    
T  2909295 tttgaaagatctctctattttttctcatattttgcacccctcaaagcctttcctttccttcccctccaaactcccaaacaaagccttag 2909383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 37649519 - 37649434
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    ||||||||||||||| |||||| |||||||||| |||||||||||  ||| | ||  | |||||||||||||| ||||||||||||    
T  37649519 tttgaaagatttctctatttttcctcatattttgcacccctcaaagcctttcctttccttcccctccaaactcccaaacaaagcct 37649434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 50226209 - 50226290
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaa 223  Q
    |||||||| |||||||||||| | | |||||||||||||||||||| ||||| ||| ||||| |||||||||  ||||||||    
T  50226209 tttgaaagttttctccattttctgttatattttccacccctcaaaaccttcccttcccctcctctccaaacttgcaaacaaa 50226290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 37875655 - 37875572
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagc 225  Q
    |||||||||||| |||||||| ||||||||||| ||||||||||||  || |  || ||||| |||||||||| ||||||||||    
T  37875655 tttgaaagatttttccattttctctcatatttttcacccctcaaaacatttccctcccctcctctccaaactcgcaaacaaagc 37875572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 229
Target Start/End: Complemental strand, 52068050 - 52067963
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcctta 229  Q
    ||||||||||||||| |||||| |||||||||| |||||||||||  ||| | ||  | |||||||||||||  ||||||||||||||    
T  52068050 tttgaaagatttctctatttttcctcatattttgcacccctcaaagcctttcttttccttcccctccaaacttccaaacaaagcctta 52067963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 224
Target Start/End: Original strand, 666459 - 666537
Alignment:
Q  146 aaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaag 224  Q
    |||||||||| ||||||  |||||||||||||||||||||| |||| | |||  || |||| ||||||| |||||||||    
T  666459 aaagatttcttcattttccctcatattttccacccctcaaagtctttccttcatcttcccttcaaactcgcaaacaaag 666537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 224
Target Start/End: Complemental strand, 38795319 - 38795233
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaag 224  Q
    |||||||||||||||||| ||||||  |||||||||||||||  |||||   |||  ||| ||||| |||||||||| |||||||||    
T  38795319 aaaatttgaaagatttcttcattttccctcatattttccacctttcaaagctttcacttcccctccgctccaaactcgcaaacaaag 38795233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 233
Target Start/End: Complemental strand, 12293713 - 12293676
Alignment:
Q  196 tctcctcccctccaaactcacaaacaaagccttagtga 233  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  12293713 tctcctcccctccaaactcccaaacaaagccttagtga 12293676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 29092261 - 29092306
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaa 187  Q
    ||||||||||||||| |||||| |||||||||| ||||||||||||    
T  29092261 tttgaaagatttctctatttttcctcatattttgcacccctcaaaa 29092306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 236
Target Start/End: Original strand, 4204949 - 4204984
Alignment:
Q  201 tcccctccaaactcacaaacaaagccttagtgaatt 236  Q
    ||||||||||||||||||||||||||| ||||||||    
T  4204949 tcccctccaaactcacaaacaaagcctaagtgaatt 4204984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 229
Target Start/End: Original strand, 5584679 - 5584775
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatc-ttccattc---tcc-tcccctccaaactcacaaacaaagcctta 229  Q
    |||||||| |||||||||| ||||||  ||||||||| |||||||||||  | |||| |||   ||| |||||||||||||| ||||||||||||||    
T  5584679 aaaatttgtaagatttctctatttttcttcatattttgcacccctcaaagcctttcctttcctttccttcccctccaaactcgcaaacaaagcctta 5584775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 5883511 - 5883426
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaa 223  Q
    ||||| ||||| ||||||| ||||||||  ||||||| |||||||||||| | | | ||  ||| |||||||||||| ||||||||    
T  5883511 aaaatatgaaaaatttctcaattttttcctatatttttcacccctcaaaaccattcttttcccttccctccaaactctcaaacaaa 5883426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 17760388 - 17760303
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    ||||||| ||||||| |||||| ||||||| || |||||||||||  ||| ||||  | ||||||| |||||| |||| |||||||    
T  17760388 tttgaaaaatttctctatttttcctcatatgttgcacccctcaaagcctttcatttccttcccctctaaactcccaaataaagcct 17760303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 232
Target Start/End: Complemental strand, 43036169 - 43036136
Alignment:
Q  199 cctcccctccaaactcacaaacaaagccttagtg 232  Q
    |||||||||||||||| |||||||||||||||||    
T  43036169 cctcccctccaaactcccaaacaaagccttagtg 43036136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 45752105 - 45752072
Alignment:
Q  195 ttctcctcccctccaaactcacaaacaaagcctt 228  Q
    |||||||||||||||||||| |||||||||||||    
T  45752105 ttctcctcccctccaaactctcaaacaaagcctt 45752072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 49102882 - 49102789
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagccttagt 231  Q
    ||||| ||||||||||||| |||||| |  ||||||  | |||| ||||  | | | ||| |||||||||||||||| ||||||||||||||||    
T  49102882 aaaatgtgaaagatttctcaatttttccctatatttctctccccccaaagcccttccttcccctcccctccaaactcccaaacaaagccttagt 49102789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 666279 - 666251
Alignment:
Q  201 tcccctccaaactcacaaacaaagcctta 229  Q
    |||||||||||||||||||||||||||||    
T  666279 tcccctccaaactcacaaacaaagcctta 666251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 33324812 - 33324860
Alignment:
Q  152 ttctccattttttctcatattttccacccctcaaaatcttccattctcc 200  Q
    |||||||||||  ||||||||| |||||||||||| |||||| ||||||    
T  33324812 ttctccattttccctcatatttcccacccctcaaagtcttcccttctcc 33324860  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 230
Target Start/End: Original strand, 46001748 - 46001832
Alignment:
Q  146 aaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagccttag 230  Q
    ||||||||||| ||||||  ||||||||| |||||||||||| ||| | ||  | | ||||||||||||  ||||||| ||||||    
T  46001748 aaagatttctctatttttcttcatattttgcacccctcaaaacctttcctttcctttccctccaaactcctaaacaaaaccttag 46001832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 34280665 - 34280750
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    |||||||||||||||||||||  ||||||||||||||||||||||  ||||| ||| || ||||||||||||||||||||||||||    
T  34280665 tttgaaagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 34280750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 3537380 - 3537469
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    |||||||||||||||||| ||||||  ||||||||||||||||||||||  |||||  || | |||||||||||||| ||||||||||||    
T  3537380 aaaatttgaaagatttcttcattttccctcatattttccacccctcaaagccttcccctcccttcccctccaaactcccaaacaaagcct 3537469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 50535010 - 50534917
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagccttagtgaat 235  Q
    |||||||||||||||||||||  ||||||||||||||| ||||||   |||  ||| |||||||||||||||| ||||||||| ||||| ||||    
T  50535010 tttgaaagatttctccattttccctcatattttccaccactcaaagcattctgttcccctcccctccaaactcgcaaacaaagtcttagggaat 50534917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 51686680 - 51686770
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcctt 228  Q
    ||||||| |||||||||| ||||||  ||| |||||||||||| |||||  ||| ||||| ||| |||||||||||| |||||||||||||    
T  51686680 aaaatttaaaagatttcttcattttccctcgtattttccacccttcaaagcctttcattcaccttccctccaaactcgcaaacaaagcctt 51686770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 44400877 - 44400962
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    ||||||||||||||| |||||| |||||||||| |||||||||||  ||| | ||  | |||||||||||||| ||||||||||||    
T  44400877 tttgaaagatttctctatttttcctcatattttgcacccctcaaagcctttcctttccttcccctccaaactcccaaacaaagcct 44400962  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 229
Target Start/End: Complemental strand, 37674056 - 37673969
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcctta 229  Q
    ||||||||||||||| |||||| |||||||||| |||||||||||  ||| | ||  | |||||||||||||| |||| |||||||||    
T  37674056 tttgaaagatttctctatttttcctcatattttgcacccctcaaagcctttcctttccttcccctccaaactcccaaagaaagcctta 37673969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 25754015 - 25753930
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcctt 228  Q
    ||||||||||||||| |||||| |||||||||| |||||||||||   || | || || |||||||||||||| |||||||||||||    
T  25754015 tttgaaagatttctctatttttcctcatattttacacccctcaaagcatttcctt-tcatcccctccaaactcccaaacaaagcctt 25753930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 47359492 - 47359558
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctcc 208  Q
    |||||||||||||||||||||  ||||||||||||||||||||||  ||||| ||| | ||||||||    
T  47359492 tttgaaagatttctccattttccctcatattttccacccctcaaagccttcccttcccttcccctcc 47359558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 227
Target Start/End: Complemental strand, 5939688 - 5939599
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    ||||||||||||||||||| || ||| || ||||||| |||||||||||  ||| | ||  | |||||||||||||| ||||||||||||    
T  5939688 aaaatttgaaagatttctctatatttccttatattttgcacccctcaaagcctttcctttccttcccctccaaactcccaaacaaagcct 5939599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 35989269 - 35989346
Alignment:
Q  150 atttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    ||||||||||||| ||| ||||||| ||||||||||| | |||||||| |||||| | |||| ||| |||||||||||    
T  35989269 atttctccattttctctaatatttttcacccctcaaagtattccattcccctccctttcaaattcataaacaaagcct 35989346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 48908795 - 48908710
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    ||||||||||||||| |||||| |||||||| | |||||||||||  ||| | ||  | |||||||||||||| ||||||||||||    
T  48908795 tttgaaagatttctctatttttcctcatattctgcacccctcaaagcctttcctttccttcccctccaaactcccaaacaaagcct 48908710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 230
Target Start/End: Original strand, 36598417 - 36598508
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagccttag 230  Q
    ||||| ||||||||||  ||||||| |||||||||| | |||| ||||| |||||  ||| |||||||||||||||| |||||||| ||||||    
T  36598417 aaaatgtgaaagattttaccatttt-tctcatatttccaacccttcaaagtcttctcttcccctcccctccaaactcccaaacaaaaccttag 36598508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 33944539 - 33944458
Alignment:
Q  146 aaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    ||||||||||| |||||| |||||||||| |||||||||||  ||| | ||  | | |||||||||||| ||||||||||||    
T  33944539 aaagatttctctatttttcctcatattttgcacccctcaaagcctttcctttcctttccctccaaactcccaaacaaagcct 33944458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 34729245 - 34729161
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaa 223  Q
    ||||| ||||| |||||||||||||  ||  ||||||||| ||| ||||  |||||||||| ||| ||||||||||||||||||||    
T  34729245 aaaatgtgaaaaatttctccattttcccttgtattttccaaccc-caaagccttccattcttctctcctccaaactcacaaacaaa 34729161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 38639757 - 38639842
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    ||||||||||||||| |||||| || ||||||| |||||||||||  ||| | ||  | ||||||||| |||| ||||||||||||    
T  38639757 tttgaaagatttctctatttttccttatattttgcacccctcaaagcctttcttttccttcccctccagactcccaaacaaagcct 38639842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 27197425 - 27197508
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagc 225  Q
    |||||||||||| |||||||| ||||||||||| ||||| |||||  ||| ||||| ||||| || |  |||| ||||||||||    
T  27197425 tttgaaagatttttccattttctctcatatttttcacccttcaaagcctttcattcccctcctcttcccactcccaaacaaagc 27197508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 33900622 - 33900563
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattc 197  Q
    ||||||||||| ||||||| |||||| |||||||||| ||||| |||||| ||| |||||    
T  33900622 aaaatttgaaaaatttctctatttttcctcatattttgcacccttcaaaacctttcattc 33900563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 45570846 - 45570759
Alignment:
Q  143 ttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagccttag 230  Q
    ||||||||| |||  |||||| |||||||||||||||| |||||  |||   || ||||||||||||||||  ||||| |||||||||    
T  45570846 ttgaaagatctctttatttttcctcatattttccacccttcaaagccttatcttttcctcccctccaaacttgcaaacgaagccttag 45570759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 49183863 - 49183902
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccc 181  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  49183863 tttgaaagatttctccattttccctcatattttccacccc 49183902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 53664512 - 53664426
Alignment:
Q  142 tttgaaagatttctccattttttct-catattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    |||| ||||||||||   ||||||| |||||||| || ||||||||||||| | ||  | |||||||||||||| ||||||||||||    
T  53664512 tttgtaagatttctcttatttttcttcatattttgcatccctcaaaatctttcctttccttcccctccaaactcgcaaacaaagcct 53664426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 36185224 - 36185256
Alignment:
Q  199 cctcccctccaaactcacaaacaaagccttagt 231  Q
    |||||||||||||||| ||||||||||||||||    
T  36185224 cctcccctccaaactcccaaacaaagccttagt 36185256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 235
Target Start/End: Original strand, 39115144 - 39115176
Alignment:
Q  203 ccctccaaactcacaaacaaagccttagtgaat 235  Q
    ||||||||||||||||||||||||| |||||||    
T  39115144 ccctccaaactcacaaacaaagcctaagtgaat 39115176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 49183590 - 49183562
Alignment:
Q  201 tcccctccaaactcacaaacaaagcctta 229  Q
    |||||||||||||||||||||||||||||    
T  49183590 tcccctccaaactcacaaacaaagcctta 49183562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 14569953 - 14569860
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatc-ttccattctcctccc-ctccaaactcacaaacaaagccttagtga 233  Q
    |||||||||||||||||||||  ||||||||||||||||||||||  | |||| ||| |||||| |||||||||||||||||||||||||||||    
T  14569953 tttgaaagatttctccattttccctcatattttccacccctcaaagcctttccgttcccctcccgctccaaactcacaaacaaagccttagtga 14569860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 227
Target Start/End: Complemental strand, 35683380 - 35683291
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    |||||||| |||||||||| ||||||  ||||||||| |||||||||||  ||| |||| || |||||||||||||| ||||||||||||    
T  35683380 aaaatttgtaagatttctctatttttcttcatattttgcacccctcaaagcctttcattttcttcccctccaaactcgcaaacaaagcct 35683291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 39649749 - 39649837
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagccttag 230  Q
    ||||||||||||||| |||||| |||||||||| |||||||||||  ||| | ||  | |||||||||||||  |||||||||||||||    
T  39649749 tttgaaagatttctctatttttcctcatattttgcacccctcaaagccttacctttccttcccctccaaactaccaaacaaagccttag 39649837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 229
Target Start/End: Complemental strand, 10955592 - 10955505
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcctta 229  Q
    |||||||||||||||||||||| |||||||||| ||| |||||||   || | ||||| ||| |||||||||| |||| |||||||||    
T  10955592 tttgaaagatttctccatttttcctcatatttttcactcctcaaagcttttccttctcttcctctccaaactctcaaataaagcctta 10955505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 229
Target Start/End: Original strand, 13569536 - 13569627
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcctta 229  Q
    ||||||| ||||||||||| |||||| |||||||||| ||||| ||||| |||| | ||  | |||||||||||||| |||||||| |||||    
T  13569536 aaaatttaaaagatttctctatttttcctcatattttgcacccatcaaagtctttcctttccttcccctccaaactcccaaacaaaacctta 13569627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 227
Target Start/End: Complemental strand, 5772637 - 5772548
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    |||||||| ||| |||||| ||||||  ||||||||| ||||||||||| |||| | ||  | |||||||||||||| ||||||||||||    
T  5772637 aaaatttgtaaggtttctctatttttcttcatattttgcacccctcaaagtctttcctttccttcccctccaaactcgcaaacaaagcct 5772548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 10843212 - 10843300
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcc-tcccctccaaactcacaaacaaagccttag 230  Q
    ||||||||||||||| |||||| |||||||||| |||||||||||  ||| |  ||||| |||||||||||||| |||||||||| ||||    
T  10843212 tttgaaagatttctctatttttcctcatattttgcacccctcaaagcctttc-ctctccttcccctccaaactcccaaacaaagcattag 10843300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 229
Target Start/End: Complemental strand, 38568286 - 38568195
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcctta 229  Q
    |||| ||||||||||||| ||||||  ||||||||||||||||||| ||  |||||   | || || |||||||||| ||||||||||||||    
T  38568286 aaaaattgaaagatttcttcattttccctcatattttccacccctcgaagccttcccccccccccctctccaaactcgcaaacaaagcctta 38568195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 39027927 - 39027990
Alignment:
Q  151 tttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactc 214  Q
    ||||| ||||||| ||| |||||||||||||||||||  |||||||  ||||||||||||||||    
T  39027927 tttcttcatttttcctcctattttccacccctcaaaactttccatttccctcccctccaaactc 39027990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 10438150 - 10438242
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattc--tcc--tcccctccaaactcacaaacaaagcc 226  Q
    ||||||| ||| ||||||| |||||| |||||||||| |||||||||||  ||| |||||  |||  | |||||||||||| |||||||||||    
T  10438150 aaaatttaaaaaatttctctatttttcctcatattttgcacccctcaaagcctttcattcattccctttccctccaaactcccaaacaaagcc 10438242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 229
Target Start/End: Original strand, 11168458 - 11168492
Alignment:
Q  195 ttctcctcccctccaaactcacaaacaaagcctta 229  Q
    |||||||||||||||||||| ||||||||||||||    
T  11168458 ttctcctcccctccaaactcccaaacaaagcctta 11168492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 228
Target Start/End: Original strand, 18671139 - 18671210
Alignment:
Q  155 tccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcctt 228  Q
    ||||||||  ||| |||||||||||| |||||  ||||| ||| |||||||||||||||||| |||||||||||    
T  18671139 tccattttccctcgtattttccacccttcaaagccttcccttc-cctcccctccaaactcac-aacaaagcctt 18671210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 230
Target Start/End: Original strand, 35708936 - 35708965
Alignment:
Q  201 tcccctccaaactcacaaacaaagccttag 230  Q
    ||||||||||||||||||||||||||||||    
T  35708936 tcccctccaaactcacaaacaaagccttag 35708965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 37296 - 37377
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaa 219  Q
    ||||||| ||||||||||| ||| |  ||||||||||| |||||||||| |||| |||||||||||||||||||||||||||    
T  37296 aaaatttaaaagatttctcaattctccctcatattttctacccctcaaagtctttcattctcctcccctccaaactcacaaa 37377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 216
Target Start/End: Original strand, 30628 - 30706
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcac 216  Q
    ||||||| ||||||||||| ||| |  ||||||||||| | |||||||| |||| ||||||||||||||||||||||||    
T  30628 aaaatttaaaagatttctcaattctccctcatattttctaaccctcaaagtctttcattctcctcccctccaaactcac 30706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 12779687 - 12779776
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    ||||||||||| |||||||||||||| |||||||||| ||||||||||| |||| ||||  | |||||| ||||||| ||||||||||||    
T  12779687 aaaatttgaaaaatttctccatttttcctcatattttgcacccctcaaagtctttcatttccttccccttcaaactcccaaacaaagcct 12779776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 32719202 - 32719114
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagccttag 230  Q
    ||||||||||||||| |||||| |||||||||| |||||||||||  ||| | ||  | ||||||| |||||| |||||||||||||||    
T  32719202 tttgaaagatttctctatttttactcatattttgcacccctcaaagcctttcctttccttcccctctaaactcccaaacaaagccttag 32719114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 24849456 - 24849381
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaact 213  Q
    |||| |||||||||||||  |||||  ||||||||||||||||||||||| ||| ||||| ||||| |||||||||    
T  24849456 aaaaattgaaagatttcttaattttccctcatattttccacccctcaaaacctttcattcccctcctctccaaact 24849381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 28551787 - 28551725
Alignment:
Q  165 ctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    |||||||||||||||  ||||| | |||| ||| |||||||||||||||| ||||||||||||    
T  28551787 ctcatattttccacctttcaaagttttcccttcccctcccctccaaactcccaaacaaagcct 28551725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 33590236 - 33590188
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaa 186  Q
    |||| |||||| ||||||||| ||||||||||||||| |||||||||||    
T  33590236 aaaaattgaaaaatttctccaatttttctcatattttgcacccctcaaa 33590188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 14201820 - 14201866
Alignment:
Q  185 aaatcttccattctcctcccctccaaactcacaaacaaagccttagt 231  Q
    ||||||||| ||| | ||||| |||||||||||||||||||||||||    
T  14201820 aaatcttcccttcccttccccaccaaactcacaaacaaagccttagt 14201866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 20820427 - 20820354
Alignment:
Q  152 ttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagc 225  Q
    |||||||||||  ||||||||||||||||||||||   || | ||| ||||||||| |||| | ||||||||||    
T  20820427 ttctccattttccctcatattttccacccctcaaatcttttccttcccctcccctctaaacccgcaaacaaagc 20820354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 5884 - 5807
Alignment:
Q  146 aaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaa 223  Q
    |||||||||||||||||  |||||||||||||||||||||| |||||| |||  || |||||||||||| ||||||||    
T  5884 aaagatttctccattttccctcatattttccacccctcaaagtcttcccttcctcttccctccaaactcccaaacaaa 5807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 21626299 - 21626388
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    ||||||||||| |||||||||||||| |||||||||| |||||||||||  ||| ||||  | |||||| ||||||| ||||||||||||    
T  21626299 aaaatttgaaaaatttctccatttttcctcatattttgcacccctcaaagcctttcatttccttccccttcaaactcccaaacaaagcct 21626388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 37194445 - 37194530
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    ||||||||||||||| |||||| |||||||||| |||||||||||  ||| |||| || | |||||||||||| ||||||||||||    
T  37194445 tttgaaagatttctctatttttcctcatattttgcacccctcaaagcctttcattttctttccctccaaactcccaaacaaagcct 37194530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 216
Target Start/End: Complemental strand, 1270609 - 1270531
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcac 216  Q
    ||||||| ||||||||||| ||| |  ||||||||||| | |||||||| |||| ||||||||||||||||||||||||    
T  1270609 aaaatttaaaagatttctcaattctccctcatattttctatccctcaaagtctttcattctcctcccctccaaactcac 1270531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 227
Target Start/End: Complemental strand, 13018385 - 13018296
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    |||| |||||||||||||| |||||||| |||||||| |||||||||||  ||| | ||  | |||||||||||||| ||||||||||||    
T  13018385 aaaaattgaaagatttctctattttttcacatattttgcacccctcaaagcctttcctttccttcccctccaaactcccaaacaaagcct 13018296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 43572447 - 43572362
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    ||||||||||||||| |||||| |||||||||| |||||||||||  ||| | ||  | |||||||||||||| ||||||||||||    
T  43572447 tttgaaagatttctctatttttcctcatattttgcacccctcaaagcctttcctttccttcccctccaaactcccaaacaaagcct 43572362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 230
Target Start/End: Original strand, 11515218 - 11515310
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagccttag 230  Q
    |||||||| |||||||||| ||||||  ||||||||| ||| |||||||| ||| | ||  | |||||||||||||| |||||||||||||||    
T  11515218 aaaatttgtaagatttctctatttttcttcatattttgcactcctcaaaacctttcctttccttcccctccaaactcgcaaacaaagccttag 11515310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 229
Target Start/End: Original strand, 7367752 - 7367843
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcctta 229  Q
    ||||| |||||||||||| ||||||  |||||||||||||| ||  |||  ||||| |||  ||||||||||||||| ||||||||||||||    
T  7367752 aaaatgtgaaagatttcttcattttccctcatattttccactccctaaagccttcccttccactcccctccaaactctcaaacaaagcctta 7367843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 225
Target Start/End: Complemental strand, 30072352 - 30072265
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagc 225  Q
    |||||||||||||| |||||||||  ||||||||||| |||||||||||| ||| | |||  || |||||||||||| ||| ||||||    
T  30072352 aaaatttgaaagatctctccatttcctctcatattttacacccctcaaaacctttccttcctcttccctccaaactcgcaagcaaagc 30072265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 34757784 - 34757835
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttcc 193  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||| |||||    
T  34757784 tttgaaagatttctcaattttctctcatattttccacccctcaaaaccttcc 34757835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 1364997 - 1365086
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    |||||||| |||||||||| ||||||  ||||||||| |||||||||||  ||| | ||  | |||||||||||||| ||||||||||||    
T  1364997 aaaatttgtaagatttctctatttttcttcatattttgcacccctcaaagcctttcctttccttcccctccaaactcgcaaacaaagcct 1365086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 15234767 - 15234694
Alignment:
Q  150 atttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaa 223  Q
    |||||||||||||  ||| |||||||||||||||||| |||||  ||| |||||||||||||||| ||| ||||    
T  15234767 atttctccattttccctcgtattttccacccctcaaagtcttctcttcccctcccctccaaactcgcaatcaaa 15234694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 237
Target Start/End: Original strand, 31082979 - 31083071
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagccttagtgaattt 237  Q
    ||||| |||||||||||||||  ||||||||||||||   |||||  ||| | ||| |||||||||||||||| |||||||||||| || ||||||    
T  31082979 tttgatagatttctccattttccctcatattttccac---tcaaagcctttccttcccctcccctccaaactcccaaacaaagcctaagggaattt 31083071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 35550039 - 35549982
Alignment:
Q  165 ctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaa 222  Q
    ||||||||||||||||||||||  ||| ||||| |||||||||||||||| |||||||    
T  35550039 ctcatattttccacccctcaaagcctttcattcccctcccctccaaactctcaaacaa 35549982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 40212181 - 40212269
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagccttag 230  Q
    ||||||||||||||| |||||| |||||||||| |||||||||||  |||   ||  | |||||||||||||| |||||||||| ||||    
T  40212181 tttgaaagatttctctatttttcctcatattttgcacccctcaaagccttttctttccttcccctccaaactcccaaacaaagctttag 40212269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 41100014 - 41099933
Alignment:
Q  146 aaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    |||||||||| ||||||  |||||||||| |||||||||||  |||||  || |||| |||||||| || ||||||||||||    
T  41100014 aaagatttcttcattttccctcatatttttcacccctcaaagccttcccctcccctctcctccaaattcccaaacaaagcct 41099933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 26905988 - 26906032
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaa 186  Q
    ||||||||||||||| |||||| |||||||||| |||||||||||    
T  26905988 tttgaaagatttctctatttttcctcatattttgcacccctcaaa 26906032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 39205195 - 39205273
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaac 220  Q
    |||||||||||||| ||||||  ||||||  |||||||||| |||  ||||| ||| |||||||| ||||||| |||||    
T  39205195 tttgaaagatttctacattttccctcatacattccacccctaaaagccttcccttcccctccccttcaaactcgcaaac 39205273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 16519266 - 16519303
Alignment:
Q  196 tctcctcccctccaaactcacaaacaaagccttagtga 233  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  16519266 tctcttcccctccaaactcgcaaacaaagccttagtga 16519303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 232
Target Start/End: Complemental strand, 16625660 - 16625627
Alignment:
Q  199 cctcccctccaaactcacaaacaaagccttagtg 232  Q
    |||||||||||||||| |||||||||||||||||    
T  16625660 cctcccctccaaactcccaaacaaagccttagtg 16625627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 232
Target Start/End: Complemental strand, 18780282 - 18780249
Alignment:
Q  199 cctcccctccaaactcacaaacaaagccttagtg 232  Q
    |||||||||||||||| |||||||||||||||||    
T  18780282 cctcccctccaaactcccaaacaaagccttagtg 18780249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 232
Target Start/End: Complemental strand, 44137057 - 44137024
Alignment:
Q  199 cctcccctccaaactcacaaacaaagccttagtg 232  Q
    |||||||||||||||| |||||||||||||||||    
T  44137057 cctcccctccaaactcccaaacaaagccttagtg 44137024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 28539330 - 28539242
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagccttag 230  Q
    |||||||||||||| ||||||   ||||||||||||||||| ||| ||||||  || | || | | |||||||| ||||||| ||||||    
T  28539330 tttgaaagatttcttcattttccttcatattttccaccccttaaagtcttcccctcccttctctttcaaactcaaaaacaaaaccttag 28539242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 230
Target Start/End: Complemental strand, 41655314 - 41655222
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagccttag 230  Q
    ||||| |||||||||  || ||||| ||  ||||||| |||||||| ||  |||||   | |||||||||||||||| |||||||||||||||    
T  41655314 aaaatgtgaaagattgttctattttctcctatatttttcacccctcgaagccttcccaccccctcccctccaaactcccaaacaaagccttag 41655222  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 229
Target Start/End: Complemental strand, 29114146 - 29114059
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcctta 229  Q
    ||||||||||||||| |||||| |||||||||| |||||||||||  ||| | ||  | |||||||||||||| ||||||||||||||    
T  29114146 tttgaaagatttctctatttttcctcatattttgcacccctcaaagcctttcctttccttcccctccaaactcccaaacaaagcctta 29114059  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 229
Target Start/End: Complemental strand, 38136737 - 38136650
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcctta 229  Q
    ||||||||||||||| |||||  |||||||||| |||||||||||  ||| | ||| | |||||||||||||| ||||||||||||||    
T  38136737 tttgaaagatttctctattttccctcatattttgcacccctcaaagcctttccttcccttcccctccaaactcccaaacaaagcctta 38136650  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 22165661 - 22165584
Alignment:
Q  150 atttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    ||||||| |||||  ||||||||||||||| ||||||  ||||| |||  ||||||||||||||||||||||||||||    
T  22165661 atttctcaattttccctcatattttccacctctcaaagccttcccttcctctcccctccaaactcacaaacaaagcct 22165584  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 49668011 - 49667934
Alignment:
Q  150 atttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    |||||||||||||  ||||||||||||| ||||||||||||||| ||  ||| ||  |||||||||||||||||||||    
T  49668011 atttctccattttccctcatattttccatccctcaaaatcttccctttcccttcctgccaaactcacaaacaaagcct 49667934  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 30198674 - 30198588
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcctt 228  Q
    ||||||||||||||| |||||| |||||||||| |||||||||||  ||| | ||  | ||| |||||||||| |||||||||||||    
T  30198674 tttgaaagatttctctatttttcctcatattttgcacccctcaaagcctttcctttccttcctctccaaactcccaaacaaagcctt 30198588  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 41709021 - 41708936
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    ||||||||||||||||||| |  |||||||||| ||  ||||||| |||||| ||| ||| |||||||||||| |||| |||||||    
T  41709021 tttgaaagatttctccattctacctcatatttttcaatcctcaaagtcttcccttccccttccctccaaactcgcaaagaaagcct 41708936  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 12708737 - 12708655
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaag 224  Q
    ||||||||||||||| |||||| |||||||||| |||||||||||  ||| | ||  | | |||||||||||| |||||||||    
T  12708737 tttgaaagatttctctatttttcctcatattttgcacccctcaaagcctttcctttcctttccctccaaactcccaaacaaag 12708655  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 230
Target Start/End: Complemental strand, 16461627 - 16461542
Alignment:
Q  146 aaagatttctccattttttctcatattttccacccctcaaaatcttc-cattctcctcccctccaaactcacaaacaaagccttag 230  Q
    ||||||||||| |||||  ||||||||||||||||||||||   ||| | ||| ||||| |||||||||| |||||||||| ||||    
T  16461627 aaagatttctcaattttccctcatattttccacccctcaaagctttctctttcccctcctctccaaactcgcaaacaaagctttag 16461542  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 224
Target Start/End: Original strand, 30862996 - 30863077
Alignment:
Q  144 tgaaagatttctccattttttctc-atattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaag 224  Q
    |||||||||||| ||||||||||  ||||||| |||| ||  || || ||| ||| ||||||||||||||||||||||||||    
T  30862996 tgaaagatttcttcattttttctatatatttttcacctcttgaactcctcccttcccctcccctccaaactcacaaacaaag 30863077  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 33500695 - 33500784
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    |||| ||||||| |||||| |||||| | |||||||| |||||||||||  ||| | ||  | |||||||||||||| ||||||||||||    
T  33500695 aaaaattgaaaggtttctctatttttccacatattttgcacccctcaaagcctttcctttccttcccctccaaactcccaaacaaagcct 33500784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 47063607 - 47063575
Alignment:
Q  198 tcctcccctccaaactcacaaacaaagccttag 230  Q
    |||||||||||||||||||||||||||||||||    
T  47063607 tcctcccctccaaactcacaaacaaagccttag 47063575  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 55510129 - 55510169
Alignment:
Q  189 cttccattctcctcccctccaaactcacaaacaaagcctta 229  Q
    ||||||||| |||||||||||||||| ||||||||||||||    
T  55510129 cttccattcccctcccctccaaactcccaaacaaagcctta 55510169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 28175349 - 28175294
Alignment:
Q  159 ttttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactc 214  Q
    |||||||||||||||| |||||||||||||||| | ||  | ||||||||||||||    
T  28175349 ttttttctcatattttacacccctcaaaatctttcctttccttcccctccaaactc 28175294  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 35959371 - 35959434
Alignment:
Q  168 atattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagccttagt 231  Q
    |||||||||||||| ||||  ||| | | | |||||||||||||||| ||||||||||||||||    
T  35959371 atattttccaccccccaaagcctttcctacccctcccctccaaactcccaaacaaagccttagt 35959434  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 368236 - 368274
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccaccc 180  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  368236 tttgaaagatttctcaattttttctaatattttccaccc 368274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 15490156 - 15490110
Alignment:
Q  177 acccctcaaaatcttccattctcctcccctccaaactcacaaacaaa 223  Q
    |||| |||||| ||| |||||||||||||||||||||| ||||||||    
T  15490156 acccttcaaaacctttcattctcctcccctccaaactcccaaacaaa 15490110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 15498665 - 15498619
Alignment:
Q  177 acccctcaaaatcttccattctcctcccctccaaactcacaaacaaa 223  Q
    |||| |||||| ||| |||||||||||||||||||||| ||||||||    
T  15498665 acccttcaaaacctttcattctcctcccctccaaactcccaaacaaa 15498619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 232
Target Start/End: Original strand, 16318792 - 16318886
Alignment:
Q  139 aaatttgaaagatttctccattttttctcatattttccacccc-tcaaaatcttccattctcctcccctccaaactcacaaacaaagccttagtg 232  Q
    ||||||| |||||||||| ||||||  ||||||||| |||||| |||||  ||| | ||  | ||| ||||||||||||||||||||||| ||||    
T  16318792 aaatttgtaagatttctctatttttcttcatattttgcaccccctcaaagcctttcctttccttcctctccaaactcacaaacaaagcctaagtg 16318886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 224
Target Start/End: Complemental strand, 50784265 - 50784179
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaag 224  Q
    |||| ||||||||||||| || ||| ||||||||||| |||||||||||    ||  ||  |||||||||||||||| |||||||||    
T  50784265 aaaaattgaaagatttcttcaatttctctcatatttttcacccctcaaagcactcattttccctcccctccaaactcgcaaacaaag 50784179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 15478921 - 15478861
Alignment:
Q  177 acccctcaaaatcttccattctcctcccctccaaactcacaaacaaagccttagtgaattt 237  Q
    |||| |||||| ||| ||||||| |||||||||||||| |||||||| || ||| ||||||    
T  15478921 acccttcaaaacctttcattctcatcccctccaaactcccaaacaaaaccgtagagaattt 15478861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Original strand, 42650869 - 42650897
Alignment:
Q  201 tcccctccaaactcacaaacaaagcctta 229  Q
    |||||||||||||||||||||||||||||    
T  42650869 tcccctccaaactcacaaacaaagcctta 42650897  T

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Target: scaffold0128 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 26559 - 26645
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcctt 228  Q
    |||| |||||||||| ||||||||||||||||| |||||||||||  ||| | ||  | |||||||||||||| |||||||||||||    
T  26559 tttggaagatttctctattttttctcatattttgcacccctcaaagcctttcctttccttcccctccaaactcccaaacaaagcctt 26645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 1022 - 1107
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    ||||||||||||||| |||||||||||||||||  ||||||||||  ||| | || || ||||||||||||||  |||||||||||    
T  1022 tttgaaagatttctctattttttctcatattttgaacccctcaaagcctttccttttcttcccctccaaactcctaaacaaagcct 1107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 3471 - 3386
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    ||||||||||||||| |||||| |||||||||| ||||| |||||  ||| |||| || |||| ||||||||| ||||||||||||    
T  3471 tttgaaagatttctctatttttcctcatattttgcacccatcaaagcctttcattttcttcccttccaaactcccaaacaaagcct 3386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 594 - 509
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagcct 227  Q
    ||||||||||||| | |||||| ||||||||||  ||||||||||  ||| | || || |||| ||||||||| ||||||||||||    
T  594 tttgaaagatttccctatttttcctcatatttttaacccctcaaagcctttccttttcttcccttccaaactcccaaacaaagcct 509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 230
Target Start/End: Original strand, 7245 - 7337
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaagccttag 230  Q
    |||| |||||| |||||||||||||  |||||| ||||||||||  |||  ||||  ||||||| |||||||||||||||||||| |||||||    
T  7245 aaaaattgaaaaatttctccattttccctcatactttccaccccaaaaagccttctcttctccttccctccaaactcacaaacaatgccttag 7337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 93409 - 93365
Alignment:
Q  142 tttgaaagatttctccattttttctcatattttccacccctcaaa 186  Q
    ||||||||||||||| |||||| |||||||||| |||||||||||    
T  93409 tttgaaagatttctctatttttcctcatattttgcacccctcaaa 93365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 44884 - 44816
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatcttccattctcctcccct 206  Q
    ||||||| |||||||| | ||||||  || ||||||||||||| |||||||||||| ||||||| ||||    
T  44884 aaaatttaaaagattttttcattttccctaatattttccacccgtcaaaatcttcccttctccttccct 44816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0991 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 484 - 567
Alignment:
Q  142 tttgaaagatttctccattttttctcatatttt-ccacccctcaaaatcttccattctcctcccctccaaactcacaaacaaag 224  Q
    |||||| ||||||| ||||||  |||||||||| |||||| ||| || ||||| ||| |||||||||||||||  |||||||||    
T  484 tttgaacgatttcttcattttccctcatatttttccacccttcacaaccttcccttcccctcccctccaaactttcaaacaaag 567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 29418 - 29511
Alignment:
Q  138 aaaatttgaaagatttctccattttttctcatattttccacccctcaaaatctt-ccattctcctcccctccaaactcacaaacaaagccttagt 231  Q
    |||||||| ||||||| || ||||||  ||||||||| | |||||||||||||| || ||||  ||||  |||||||| ||||||||||||||||    
T  29418 aaaatttgtaagatttatctatttttcttcatattttgctcccctcaaaatctttcctttcttttccca-ccaaactcgcaaacaaagccttagt 29511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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