View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3629_low_33 (Length: 240)

Name: NF3629_low_33
Description: NF3629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3629_low_33
NF3629_low_33
[»] chr4 (11 HSPs)
chr4 (5-224)||(5538910-5539129)
chr4 (13-224)||(5559355-5559566)
chr4 (7-208)||(5582996-5583197)
chr4 (5-208)||(5570789-5570992)
chr4 (112-208)||(3749397-3749493)
chr4 (64-204)||(5858461-5858601)
chr4 (5-187)||(5852693-5852875)
chr4 (76-194)||(5553618-5553736)
chr4 (130-187)||(5605581-5605638)
chr4 (5-209)||(5565138-5565342)
chr4 (130-209)||(5886012-5886091)


Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 5 - 224
Target Start/End: Complemental strand, 5539129 - 5538910
Alignment:
Q  5 atgaaccgtggagattggtgttgaatgttaagtcaataaatgacaatgttccccgttggaagattttctgcggaaatttaccggtcaatccacatgattc 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  5539129 atgaaccgtggagattggtgttgaatgttaagtcaataaatgacaatgttccccgttggaagattttctgcggaaacttaccagtcaatccacatgattc 5539030  T
Q  105 aaggctaagggtagtcaaatttctgaaattggaaaatgtttcaggcactggggaagaaaaattgtttccatcgagaataatgatcgatagattctctagt 204  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5539029 aagactaagggtagtcaaatttctgaaattggaaaatgtttcaggcactggggaagaaaaattgtttccatcgagaataatgatcgatagattctctagt 5538930  T
Q  205 cttgacagagatgattcaag 224  Q
    ||||||||||||||||||||    
T  5538929 cttgacagagatgattcaag 5538910  T

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Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 5559355 - 5559566
Alignment:
Q  13 tggagattggtgttgaatgttaagtcaataaatgacaatgttccccgttggaagattttctgcggaaatttaccggtcaatccacatgattcaaggctaa 112  Q
    ||||||||  |||| |||||||||||||||||||||||||||||   ||||||||| || || |||||| || | ||||||| ||| | | |||| ||||    
T  5559355 tggagatttttgtttaatgttaagtcaataaatgacaatgttccaatttggaagatcttatgtggaaatgtatcagtcaatctacaagctgcaagactaa 5559454  T
Q  113 gggtagtcaaatttctgaaattggaaaatgtttcaggcactggggaagaaaaattgtttccatcgagaataatgatcgatagattctctagtcttgacag 212  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||    
T  5559455 gggttgtcaaatttctgaaattggaaaatgtttcaggcaccggggaagaaaaattgtttccatcaagaataatgatcgataaattctttagtcttgacag 5559554  T
Q  213 agatgattcaag 224  Q
    |||||| |||||    
T  5559555 agatgaatcaag 5559566  T

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Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 7 - 208
Target Start/End: Complemental strand, 5583197 - 5582996
Alignment:
Q  7 gaaccgtggagattggtgttgaatgttaagtcaataaatgacaatgttccccgttggaagattttctgcggaaatttaccggtcaatccacatgattcaa 106  Q
    ||||| |||||||||  |||||| | ||||||||||||||| || |||||   ||| |||||  | |  ||||||||||| ||||||||||| ||| |||    
T  5583197 gaaccatggagattgtagttgaaggataagtcaataaatgagaacgttccaatttgaaagatggtttttggaaatttaccagtcaatccacaagatgcaa 5583098  T
Q  107 ggctaagggtagtcaaatttctgaaattggaaaatgtttcaggcactggggaagaaaaattgtttccatcgagaataatgatcgatagattctctagtct 206  Q
    | || ||||| || || ||| ||||||||||||||||||  ||||||||||| ||||||||||| ||||| ||||||||||  ||||| |||| ||||||    
T  5583097 gactgagggtggttaattttttgaaattggaaaatgtttgtggcactggggatgaaaaattgttcccatcaagaataatgactgataggttctttagtct 5582998  T
Q  207 tg 208  Q
    ||    
T  5582997 tg 5582996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 208
Target Start/End: Complemental strand, 5570992 - 5570789
Alignment:
Q  5 atgaaccgtggagattggtgttgaatgttaagtcaataaatgacaatgttccccgttggaagattttctgcggaaatttaccggtcaatccacatgattc 104  Q
    ||||||| |||||||||  |||||||| ||| ||||||||||||||||||||   ||| ||||| || || |||||| |||| ||||||||||| |||      
T  5570992 atgaaccatggagattgtagttgaatgataaatcaataaatgacaatgttccaatttgaaagatattttgtggaaatgtacctgtcaatccacaagatga 5570893  T
Q  105 aaggctaagggtagtcaaatttctgaaattggaaaatgtttcaggcactggggaagaaaaattgtttccatcgagaataatgatcgatagattctctagt 204  Q
    ||| || ||||| || |  ||| | ||||||||||||||||| |||||| |||| || |||| ||| ||||| ||||||||||  ||||| |||| ||||    
T  5570892 aagactgagggtggttagttttttaaaattggaaaatgtttctggcactagggatgagaaatagttcccatcaagaataatgactgataggttctttagt 5570793  T
Q  205 cttg 208  Q
    ||||    
T  5570792 cttg 5570789  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 208
Target Start/End: Original strand, 3749397 - 3749493
Alignment:
Q  112 agggtagtcaaatttctgaaattggaaaatgtttcaggcactggggaagaaaaattgtttccatcgagaataatgatcgatagattctctagtcttg 208  Q
    ||||| ||||| ||| | ||||||| ||||||||  |||||||| || ||||||||||| ||||| ||||||||||  ||||| |||||||||||||    
T  3749397 agggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttg 3749493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 204
Target Start/End: Original strand, 5858461 - 5858601
Alignment:
Q  64 aagattttctgcggaaatttaccggtcaatccacatgattcaaggctaagggtagtcaaatttctgaaattggaaaatgtttcaggcactggggaagaaa 163  Q
    ||||| ||||| |||||| ||||||  ||| ||||  || |||| || ||||||||||| ||| | ||||| | |||||||||||| |||||||| ||||    
T  5858461 aagatcttctgtggaaatgtaccggataatgcacaaaatgcaagactgagggtagtcaagtttttaaaatttgcaaatgtttcaggaactggggatgaaa 5858560  T
Q  164 aattgtttccatcgagaataatgatcgatagattctctagt 204  Q
    ||| |||  |||| ||||||||||  ||||| |||||||||    
T  5858561 aatagttctcatcaagaataatgactgataggttctctagt 5858601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 187
Target Start/End: Complemental strand, 5852875 - 5852693
Alignment:
Q  5 atgaaccgtggagattggtgttgaatgttaagtcaataaatgacaatgttccccgttggaagattttctgcggaaatttaccggtcaatccacatgattc 104  Q
    ||||||| ||||||||| ||||| |||||| ||||||||  |||| ||||||    || ||||| ||||| |||||| |||| |||||||||||   |      
T  5852875 atgaaccatggagattgctgttgtatgttatgtcaataacagacagtgttccaatctgaaagatcttctgtggaaatgtaccagtcaatccacaatctga 5852776  T
Q  105 aaggctaagggtagtcaaatttctgaaattggaaaatgtttcaggcactggggaagaaaaattgtttccatcgagaataatga 187  Q
    ||| |||||||| ||||  |||   ||||| | ||||||||| || || ||||||||||||||||| | ||| ||||||||||    
T  5852775 aagactaagggtggtcaggttttgaaaattagcaaatgtttctggaacgggggaagaaaaattgttcctatcaagaataatga 5852693  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 194
Target Start/End: Original strand, 5553618 - 5553736
Alignment:
Q  76 ggaaatttaccggtcaatccacatgattcaaggctaagggtagtcaaatttctgaaattggaaaatgtttcaggcactggggaagaaaaattgtttccat 175  Q
    |||||| |||| || |||||||| |||  ||| |||||||| ||||  |||   ||||||| ||||||||| || || ||||||||||||||||| | ||    
T  5553618 ggaaatgtacctgttaatccacaagatgtaagactaagggtggtcaggttttgaaaattggcaaatgtttctggaacgggggaagaaaaattgttcctat 5553717  T
Q  176 cgagaataatgatcgatag 194  Q
    | |||||||||| ||||||    
T  5553718 caagaataatgaccgatag 5553736  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 5605581 - 5605638
Alignment:
Q  130 aaattggaaaatgtttcaggcactggggaagaaaaattgtttccatcgagaataatga 187  Q
    ||||||| ||||||||| ||||||||||| ||||||||||| ||||| |||| |||||    
T  5605581 aaattggcaaatgtttctggcactggggatgaaaaattgttcccatcaagaagaatga 5605638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 209
Target Start/End: Original strand, 5565138 - 5565342
Alignment:
Q  5 atgaaccgtggagattggtgttgaatgttaagtcaataaatgacaatgttccccgttggaagattttctgcggaaatttaccggtcaatccacatgattc 104  Q
    ||||||| |||||||||  ||| |||| |||||||||||  ||||||||| |    || || || || || |||||| |||||||||| |||||   | |    
T  5565138 atgaaccatggagattgtagttaaatgataagtcaataacagacaatgtttcaatctgaaaaatattttgtggaaatgtaccggtcaacccacaatctac 5565237  T
Q  105 aaggctaagggtagtcaaatttctgaaattggaaaatgtttcaggcactggggaagaaaaattgtttccatcgagaataatgatcgatagattctctagt 204  Q
    ||| || ||||| ||||  ||| | ||||||| ||||||||  ||||||||||| |||||||| ||  || | ||||||||||  ||||| |||||||||    
T  5565238 aagactgagggtggtcaggtttttaaaattggcaaatgtttgtggcactggggatgaaaaattattgtcaccaagaataatgactgataggttctctagt 5565337  T
Q  205 cttga 209  Q
     ||||    
T  5565338 tttga 5565342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 209
Target Start/End: Complemental strand, 5886091 - 5886012
Alignment:
Q  130 aaattggaaaatgtttcaggcactggggaagaaaaattgtttccatcgagaataatgatcgatagattctctagtcttga 209  Q
    ||||||| ||||||||  ||||||||||| |||||||||||  |  | |||||||||| |||||| ||||||||| ||||    
T  5886091 aaattggcaaatgtttgtggcactggggatgaaaaattgttctcgccaagaataatgaccgataggttctctagttttga 5886012  T

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