View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3629_low_35 (Length: 238)
Name: NF3629_low_35
Description: NF3629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3629_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 6527669 - 6527448
Alignment:
| Q |
1 |
ctcattggtggagatcaattgtctcacctctttcttataattgtgagattttctaagcatcaagacacattcatccacctctgaaaatgtacctcttaaa |
100 |
Q |
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| T |
6527669 |
ctcattggtggagatcaattgtctcacctctttcttataattgtgagattttctaagtatcaagacacattcatccacctctgaaaatgtacctcttaaa |
6527570 |
T |
|
| Q |
101 |
ttttaactcatttgtatttatttgaaaatttgaattgatttccctacaattatatcaaatctcatacaaaaatattcattacccacatgggtcttgcgta |
200 |
Q |
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| T |
6527569 |
ttttaactcatttgtatttatttgaaaatttgaattgatttccctacaattatatcaaatctcatacaaaaatattcattacccacatgggtcttgcgta |
6527470 |
T |
|
| Q |
201 |
agtgttggtaggcaggatgtat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
6527469 |
agtgttggtaggcaggatgtat |
6527448 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 23976019 - 23976078
Alignment:
| Q |
85 |
aaatgtacctcttaaattttaactcatttgtatttatttgaaaatttgaattgatttccc |
144 |
Q |
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| T |
23976019 |
aaatgtatctcttaaatttccacctatttgcatttatttgtaaatttgaattgatttccc |
23976078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 48365007 - 48365061
Alignment:
| Q |
90 |
tacctcttaaattttaactcatttgtatttatttgaaaatttgaattgatttccc |
144 |
Q |
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|||||||||||||| ||||| ||| |||||| || ||||||||||||||||||| |
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| T |
48365007 |
tacctcttaaatttctactcacttgcatttatatggaaatttgaattgatttccc |
48365061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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