View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3629_low_36 (Length: 237)
Name: NF3629_low_36
Description: NF3629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3629_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 2333145 - 2333343
Alignment:
| Q |
25 |
ccataatcttttctagaatgtgtaagcttaattaagcttgctggtcttgctcagatgccagaaagaaatttttctagaaaagtttgcgaaaatcttaatc |
124 |
Q |
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| T |
2333145 |
ccataatcttttctagaatgtgtaagcttaattaagcttgctggtcttgctcagatgccagaaagaattttttctagaaaagtttgcgaaaatcttaatc |
2333244 |
T |
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| Q |
125 |
ttttccacctgctttttaccagaaaaggatgcatacccaatatatgttccggtgtaaaatcatgccgtgttaatatggccaccacgggcgatctctgtg |
223 |
Q |
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| T |
2333245 |
ttttccacctgcttttaaccggaaaaggatgcatacccaatatatgttccggtgtaaaatcatgccgtgttaatatggccaccacgggcgatctctgtg |
2333343 |
T |
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Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 47778268 - 47778466
Alignment:
| Q |
25 |
ccataatcttttctagaatgtgtaagcttaattaagcttgctggtcttgctcagatgccagaaagaaatttttctagaaaagtttgcgaaaatcttaatc |
124 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
47778268 |
ccataatcttttctagaatgtgtaagcttaattaagcttgctggtcttgctcagatgccagaaagaattttttctagaaaagtttgccaaaatcttaatc |
47778367 |
T |
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| Q |
125 |
ttttccacctgctttttaccagaaaaggatgcatacccaatatatgttccggtgtaaaatcatgccgtgttaatatggccaccacgggcgatctctgtg |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
47778368 |
ttttccacctgctttttaccagaaaaggatgcatacccaatatatgttccggtgtaaaatcatgccgtgttaatatgcccaccacgggcgatctctgtg |
47778466 |
T |
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