View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3629_low_4 (Length: 506)
Name: NF3629_low_4
Description: NF3629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3629_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 21 - 387
Target Start/End: Complemental strand, 39918718 - 39918352
Alignment:
| Q |
21 |
atcaatgtcacgaggaaaaaactcagtggtggagaatttgtaacggtaaagtgtttcagcgtcgtttggtgtgagtttaaggattgttgttttggacgat |
120 |
Q |
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| T |
39918718 |
atcaatgtcacgaggaaaaaactcagtggtggagaatttgtaacggtaaagtgtttcagcgtcgtttggtgtgagtttaaggattgttgttttggacgat |
39918619 |
T |
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| Q |
121 |
gatgttttgagacggtgtttgaaaacggggttaacaaggattgacggtgtacggaactttgagtaaccgcatttgtcggtgaaaagtttaactgatgcaa |
220 |
Q |
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| T |
39918618 |
gatgttttgagacggtgtttgaaaacggggttaacaaggattgacggtgtacggaactttgagtaaccgcatttgtcggtgaaaagtttaactgatgcaa |
39918519 |
T |
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| Q |
221 |
cgttgtcgttttcagtagccatgtaagaatactcagcaccattttcacgaaaccattgttccattttctctaccagttttagccctattcccattcttct |
320 |
Q |
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| T |
39918518 |
cgttatcgttttcagtagccatgtaagaatactcagcaccattttcacgaaaccattgttccattttctctaccagttttagccctattcccattcttct |
39918419 |
T |
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| Q |
321 |
atgatttggagaaactcttaagcctaaaacgtaggctagttttgtgaaaacagggacatgattggaa |
387 |
Q |
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| T |
39918418 |
atgatttggagaaactcttaagcctaaaacgtaggctagttttgtgaaaacagggacatgattggaa |
39918352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 436 - 498
Target Start/End: Complemental strand, 39918303 - 39918241
Alignment:
| Q |
436 |
ccgcatgtaacggttttgatacaacctcgtatcattccgactgtctcattgcctatctctgct |
498 |
Q |
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| T |
39918303 |
ccgcatgtaacggttttgatacaacctcgtatcattccgactgtctcattgcctatctctgct |
39918241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 143 - 212
Target Start/End: Original strand, 5545448 - 5545517
Alignment:
| Q |
143 |
aaacggggttaacaaggattgacggtgtacggaactttgagtaaccgcatttgtcggtgaaaagtttaac |
212 |
Q |
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| T |
5545448 |
aaacggggttgacgagaattgacggtgtacggaactttgtataaccgcatttttcagtgaagagtttaac |
5545517 |
T |
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