View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3629_low_6 (Length: 472)

Name: NF3629_low_6
Description: NF3629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3629_low_6
NF3629_low_6
[»] chr5 (3 HSPs)
chr5 (1-472)||(33559922-33560393)
chr5 (59-158)||(33560698-33560797)
chr5 (46-165)||(17059129-17059248)
[»] chr2 (58 HSPs)
chr2 (131-406)||(39220923-39221198)
chr2 (255-472)||(39391222-39391439)
chr2 (298-472)||(39161389-39161563)
chr2 (298-472)||(39207631-39207805)
chr2 (43-426)||(39450988-39451371)
chr2 (3-161)||(39389740-39389898)
chr2 (57-234)||(39193013-39193190)
chr2 (57-234)||(39198693-39198870)
chr2 (237-372)||(39220705-39220840)
chr2 (2-112)||(39391032-39391142)
chr2 (2-163)||(39390579-39390740)
chr2 (36-249)||(39398170-39398383)
chr2 (117-249)||(39467848-39467980)
chr2 (237-364)||(39198915-39199042)
chr2 (143-316)||(39602590-39602763)
chr2 (151-222)||(39391160-39391231)
chr2 (3-165)||(38792872-38793034)
chr2 (146-234)||(39398616-39398704)
chr2 (27-106)||(39136598-39136677)
chr2 (142-203)||(39192888-39192949)
chr2 (142-203)||(39198568-39198629)
chr2 (184-249)||(39220870-39220935)
chr2 (16-99)||(39222292-39222375)
chr2 (57-234)||(39467527-39467704)
chr2 (45-165)||(39415559-39415679)
chr2 (393-460)||(39220659-39220726)
chr2 (2-81)||(39221164-39221243)
chr2 (117-196)||(39221691-39221770)
chr2 (117-196)||(39390148-39390227)
chr2 (117-196)||(39390568-39390647)
chr2 (125-203)||(39136879-39136957)
chr2 (117-203)||(39415121-39415207)
chr2 (378-459)||(39199014-39199095)
chr2 (2-91)||(39221670-39221759)
chr2 (131-196)||(39390792-39390857)
chr2 (21-166)||(39451374-39451519)
chr2 (31-91)||(39415161-39415221)
chr2 (48-99)||(39221872-39221923)
chr2 (48-99)||(39222082-39222133)
chr2 (3-113)||(38792672-38792782)
chr2 (117-194)||(39390358-39390435)
chr2 (27-112)||(39415283-39415368)
chr2 (142-203)||(39415530-39415591)
chr2 (2-79)||(39415768-39415845)
chr2 (27-82)||(39416045-39416100)
chr2 (5-79)||(39136877-39136951)
chr2 (45-91)||(39192917-39192963)
chr2 (45-91)||(39198597-39198643)
chr2 (2-68)||(39390369-39390435)
chr2 (4-81)||(39390791-39390868)
chr2 (142-203)||(39415782-39415843)
chr2 (42-91)||(39422180-39422229)
chr2 (391-468)||(39602480-39602557)
chr2 (117-165)||(39137043-39137091)
chr2 (145-193)||(39137300-39137348)
chr2 (3-67)||(39220758-39220822)
chr2 (130-166)||(39458496-39458532)
chr2 (62-106)||(39458568-39458612)
[»] chr7 (3 HSPs)
chr7 (2-106)||(19806959-19807063)
chr7 (121-203)||(19807240-19807322)
chr7 (5-79)||(19807238-19807312)
[»] chr3 (2 HSPs)
chr3 (143-195)||(51575155-51575207)
chr3 (138-176)||(51574591-51574629)


Alignment Details
Target: chr5 (Bit Score: 432; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Complemental strand, 33560393 - 33559922
Alignment:
Q  1 agccttcaaattccttctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33560393 agccttcaaattccttctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctccttcatttggctttctcaatgctc 33560294  T
Q  101 ctgtttcaatacatggtccttcatttggttttcaaaatccttctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactctagc 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33560293 ctgtttcaatacatgctccttcatttggttttcaaaatccttctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactctagc 33560194  T
Q  201 tccattgctcgtccttcaagttgcatctcttttgtgtcaagctcattcatacgaccttcaagttccttctcctttgactcaaattcatttatacagtctt 300  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  33560193 tccattgctcatccttcaagttgaatctcttttgtgtcaagctcattcatacgaccttcaagttccttctcctttgactcaaattccttcatacagtctt 33560094  T
Q  301 caagctgcttctctctcaaatccagcttctttacccattcttcatagtgtttctcctttgactcaagctcctccacgcgttcttgacacagcttctcttt 400  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33560093 caagctgcttctctctcgaatccagcttctttacccattcttcatagtgtttctcctttgactcaagctcctccacgcgttcttgacacagcttctcttt 33559994  T
Q  401 tgactcaagttctttaacccgacctttaaatttcttctgctttgactcaaattccttcattagagcacagct 472  Q
    |||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33559993 tgactcaagttccttaacccaacctttaaattgcttctgctttgactcaaattccttcattagagcacagct 33559922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 158
Target Start/End: Complemental strand, 33560797 - 33560698
Alignment:
Q  59 ctcttttgactgaagctccttcatttggctttcgcaatgctcctgtttcaatacatggtccttcatttggttttcaaaatccttctcttttgattcaaac 158  Q
    |||||||||||  ||||||||||||||| |||||  ||||| ||||||  |||    |||| ||||||||  |||||| |||||||||||||||||||||    
T  33560797 ctcttttgactcgagctccttcatttggttttcgacatgcttctgttttgatagcaagtccatcatttggcattcaaactccttctcttttgattcaaac 33560698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 165
Target Start/End: Complemental strand, 17059248 - 17059129
Alignment:
Q  46 cttcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgctcctgtttcaatacatggtccttcatttggttttcaaaatccttctc 145  Q
    ||||| |||| |||||||||||   ||||||||||||| |||||||| ||||||  ||  |  ||||    ||||||| |||| ||||||| ||||||||    
T  17059248 cttcatgttgtttctcttttgatgcaagctccttcattcggctttcgaaatgcttatgaattgataccaaatccttcacttggatttcaaattccttctc 17059149  T
Q  146 ttttgattcaaactccttca 165  Q
    || ||||||||||| |||||    
T  17059148 ttgtgattcaaacttcttca 17059129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 58)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 131 - 406
Target Start/End: Complemental strand, 39221198 - 39220923
Alignment:
Q  131 ttcaaaatccttctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactctagctccattgctcgtccttcaagttgcatctct 230  Q
    |||||| ||||||| ||||||||||||||||||||||| | |||||  ||||| |||||||||||||||||| |||||||||||||||| |||| |||||    
T  39221198 ttcaaattccttctgttttgattcaaactccttcacccagacttcacattgcacctcttttgactctagctctattgctcgtccttcaacttgcttctct 39221099  T
Q  231 tttgtgtcaagctcattcatacgaccttcaagttccttctcctttgactcaaattcatttatacagtcttcaagctgcttctctctcaaatccagcttct 330  Q
    ||| | ||||||||||||||||||||||||| ||||||||| ||| | |||||||| || | || | | |||||||||||||||||  | ||||||||||    
T  39221098 tttttatcaagctcattcatacgaccttcaatttccttctcgtttaattcaaattctttcaaacggacatcaagctgcttctctcttgactccagcttct 39220999  T
Q  331 ttacccattcttcatagtgtttctcctttgactcaagctcctccacgcgttcttgacacagcttctcttttgactc 406  Q
    || ||||||||||| |||| ||||||||||||| |||||||||  | ||| ||| || | ||||||||||||||||    
T  39220998 ttgcccattcttcaaagtgcttctcctttgactgaagctcctctgctcgtccttcactccgcttctcttttgactc 39220923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 255 - 472
Target Start/End: Original strand, 39391222 - 39391439
Alignment:
Q  255 ccttcaagttccttctcctttgactcaaattcatttatacagtcttcaagctgcttctctctcaaatccagcttctttacccattcttcatagtgtttct 354  Q
    |||||||||||||| |||||||| |||||||| || | || | ||||||| | |||||||||  | ||||||| ||| |||| ||| ||| |||| ||||    
T  39391222 ccttcaagttccttttcctttgattcaaattctttcacacggacttcaaggtccttctctcttgactccagctccttaacccgttcctcaaagtgcttct 39391321  T
Q  355 cctttgactcaagctcctccacgcgttcttgacacagcttctcttttgactcaagttctttaacccgacctttaaatttcttctgctttgactcaaattc 454  Q
    ||||||||| |||||||||||| ||| ||| |||| |||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||| ||    
T  39391322 cctttgactgaagctcctccactcgtccttcacactgcttctcttttgactcaagttccttaacccggcctttaaattgcttctgctttgactcaaagtc 39391421  T
Q  455 cttcattagagcacagct 472  Q
    ||||||||||||||||||    
T  39391422 cttcattagagcacagct 39391439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 298 - 472
Target Start/End: Complemental strand, 39161563 - 39161389
Alignment:
Q  298 cttcaagctgcttctctctcaaatccagcttctttacccattcttcatagtgtttctcctttgactcaagctcctccacgcgttcttgacacagcttctc 397  Q
    |||||||||||||||||||  | ||||||| | |||||| ||| ||| |||| ||||||||||||| |||||||||||| ||| ||| | || |||||||    
T  39161563 cttcaagctgcttctctcttgactccagctccgttacccgttcctcaaagtgcttctcctttgactgaagctcctccactcgtccttcatactgcttctc 39161464  T
Q  398 ttttgactcaagttctttaacccgacctttaaatttcttctgctttgactcaaattccttcattagagcacagct 472  Q
    ||||||||||||||| ||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39161463 ttttgactcaagttccttaacccggactttaaattgcttctgctttgactcaaattccttcattagagcacagct 39161389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 298 - 472
Target Start/End: Original strand, 39207631 - 39207805
Alignment:
Q  298 cttcaagctgcttctctctcaaatccagcttctttacccattcttcatagtgtttctcctttgactcaagctcctccacgcgttcttgacacagcttctc 397  Q
    |||||||||||||||||||  | ||||||| | |||||| ||| ||| |||| ||||||||||||| |||||||||||| ||| ||| | || |||||||    
T  39207631 cttcaagctgcttctctcttgactccagctccgttacccgttcctcaaagtgcttctcctttgactgaagctcctccactcgtccttcatactgcttctc 39207730  T
Q  398 ttttgactcaagttctttaacccgacctttaaatttcttctgctttgactcaaattccttcattagagcacagct 472  Q
    ||||||||||||||| ||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39207731 ttttgactcaagttccttaacccggactttaaattgcttctgctttgactcaaattccttcattagagcacagct 39207805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 43 - 426
Target Start/End: Complemental strand, 39451371 - 39450988
Alignment:
Q  43 ggccttcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgctcctgtttcaatacatggtccttcatttggttttcaaaatcctt 142  Q
    ||||| ||||||| || ||| ||||||| | | |||||| |||||||||  | ||||||| ||| ||| |  | ||||| ||||||  |||||  | ||     
T  39451371 ggcctacaagttggttttctattgactgcaacaccttcaattggctttcaaagtgctcctttttaaattccagctccttgatttggccttcaactttctc 39451272  T
Q  143 ctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactctagctccattgctcgtccttcaagttgcatctcttttgtgtcaagc 242  Q
    ||||||||||||||||||||||  |||||||||| ||||||||| |||||||| |||||||||| | |||| ||||| | || |||||||||  |||||     
T  39451271 ctcttttgattcaaactccttcttccggccttcaagttgcatcttttttgactttagctccatttcccgtcgttcaactagcttctcttttgattcaaga 39451172  T
Q  243 tcattcatacgaccttcaagttccttctcctttgactcaaattcatttatacagtcttcaagctgcttctctctcaaatccagcttctttacccattctt 342  Q
    || |||  ||||||||||||||||| |  |||||| ||||| ||  | ||| |  |||||||||||||||||||  |   || || |||||||| | |||    
T  39451171 tccttcgaacgaccttcaagttcctccatctttgattcaaactccctcatatatccttcaagctgcttctctcttgacatcaactcctttacccgtactt 39451072  T
Q  343 catagtgtttctcctttgactcaagctcctccacgcgttcttgacacagcttctcttttgactcaagttctttaacccgacctt 426  Q
    || |  | ||||||||||||||||| |||||||  ||| ||| |||  |||||||||||||||||||||| |||||| ||||||    
T  39451071 caaaacgcttctcctttgactcaaggtcctccagccgtccttcacattgcttctcttttgactcaagttccttaacctgacctt 39450988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 39389740 - 39389898
Alignment:
Q  3 ccttcaaattccttctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgctcct 102  Q
    ||||||||||||||||||||||| |||||||| | |||| || |||||||||||||| ||||||||| ||||||||||||||||||||   |||||| ||    
T  39389740 ccttcaaattccttctcctttgattcatgctcctgcaattggtcttcaagttgcttcccttttgactcaagctccttcatttggcttttataatgcttct 39389839  T
Q  103 gtttcaatacatggtccttcatttggttttcaaaatccttctcttttgattcaaactcc 161  Q
    |||||||||| || |||| |||||||  ||||||  || ||||||||||||||||||||    
T  39389840 gtttcaatacctgctcctccatttggcattcaaatcccctctcttttgattcaaactcc 39389898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 57 - 234
Target Start/End: Original strand, 39193013 - 39193190
Alignment:
Q  57 ttctcttttgactgaagctccttcatttggctttcgcaatgctcctgtttcaatacatggtccttcatttggttttcaaaatccttctcttttgattcaa 156  Q
    ||||||||| | | ||| ||||||||  || ||||| |||||||||||||  ||||   |||| ||||||||  |||||| |||||||||||||||||||    
T  39193013 ttctcttttaattcaagatccttcatccggttttcgaaatgctcctgttttgataccgagtccgtcatttggcattcaaattccttctcttttgattcaa 39193112  T
Q  157 actccttcacccggccttcatgttgcatctcttttgactctagctccattgctcgtccttcaagttgcatctcttttg 234  Q
    ||| ||||||||| ||||||||||||||||||||| ||||||||||||||||  ||||||||| |||| ||| |||||    
T  39193113 acttcttcacccgaccttcatgttgcatctcttttaactctagctccattgcctgtccttcaacttgcttcttttttg 39193190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 57 - 234
Target Start/End: Original strand, 39198693 - 39198870
Alignment:
Q  57 ttctcttttgactgaagctccttcatttggctttcgcaatgctcctgtttcaatacatggtccttcatttggttttcaaaatccttctcttttgattcaa 156  Q
    ||||||||| | | ||| ||||||||  || ||||| |||||||||||||  ||||   |||| ||||||||  |||||| |||||||||||||||||||    
T  39198693 ttctcttttaattcaagatccttcatccggttttcgaaatgctcctgttttgataccgagtccgtcatttggcattcaaattccttctcttttgattcaa 39198792  T
Q  157 actccttcacccggccttcatgttgcatctcttttgactctagctccattgctcgtccttcaagttgcatctcttttg 234  Q
    ||| ||||||||| ||||||||||||||||||||| ||||||||||||||||  ||||||||| |||| ||| |||||    
T  39198793 acttcttcacccgaccttcatgttgcatctcttttaactctagctccattgcctgtccttcaacttgcttcttttttg 39198870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 237 - 372
Target Start/End: Complemental strand, 39220840 - 39220705
Alignment:
Q  237 tcaagctcattcatacgaccttcaagttccttctcctttgactcaaattcatttatacagtcttcaagctgcttctctctcaaatccagcttctttaccc 336  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||||||| | || | |||||||||||||||||||  ||||||||||  ||||||    
T  39220840 tcaagctcattcatacgaccttcaagttccttctcctttgattcagattcattcacacggccttcaagctgcttctctcttgaatccagctttgttaccc 39220741  T
Q  337 attcttcatagtgtttctcctttgactcaagctcct 372  Q
    |||||||| | | |||||| ||||||||||| ||||    
T  39220740 attcttcacactttttctcttttgactcaagttcct 39220705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 39391032 - 39391142
Alignment:
Q  2 gccttcaaattccttctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgctcc 101  Q
    |||||||||||||||||||||| | |||||||| |||||| ||||||||||||| |||||||| |||| ||||||||||||||||||||| ||||||| |    
T  39391032 gccttcaaattccttctcctttaattcatgctccttcaattggccttcaagttgtttctctttggactcaagctccttcatttggctttcacaatgcttc 39391131  T
Q  102 tgtttcaatac 112  Q
    || ||||||||    
T  39391132 tgcttcaatac 39391142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 2 - 163
Target Start/End: Original strand, 39390579 - 39390740
Alignment:
Q  2 gccttcaaattccttctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgctcc 101  Q
    ||||||||||||  |||| ||||| |||||||| |||| ||||| |||| |||||||||||||||||| || ||||||||||||||||||  |||||| |    
T  39390579 gccttcaaattctctctcttttgattcatgctccttcactcggctttcatgttgcttctcttttgactcaaactccttcatttggctttcaaaatgcttc 39390678  T
Q  102 tgtttcaatacatggtccttcatttggttttcaaaatccttctcttttgattcaaactcctt 163  Q
    |||||  |||     ||| ||||||||  |||||| ||||||||||||||||||||||||||    
T  39390679 tgttttgatagcaaatccatcatttggcattcaaattccttctcttttgattcaaactcctt 39390740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 36 - 249
Target Start/End: Original strand, 39398170 - 39398383
Alignment:
Q  36 ttcaatcggccttcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgctcctgtttcaatacatggtccttcatttggttttcaa 135  Q
    |||| ||| ||| ||||||| |||||||||||||  | |||||||| |||||||||  | ||||    ||| ||| |  | |||||||| |||  |||||    
T  39398170 ttcactcgtcctacaagttggttctcttttgactctaactccttcaattggctttcaaagtgctgtattttaaattcccgctccttcatctggccttcaa 39398269  T
Q  136 aatccttctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactctagctccattgctcgtccttcaagttgcatctcttttgt 235  Q
    | | || ||||||||| ||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||| || | ||| |||||     
T  39398270 atttctcctcttttgactcaaactccttcttccggccttcaagttgcatctcttttgactctagctccattgctcgtccttcaacttccttcttttttga 39398369  T
Q  236 gtcaagctcattca 249  Q
     |||||||| ||||    
T  39398370 ttcaagctcgttca 39398383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 117 - 249
Target Start/End: Complemental strand, 39467980 - 39467848
Alignment:
Q  117 tccttcatttggttttcaaaatccttctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactctagctccattgctcgtcctt 216  Q
    |||||||| |||  |||||| | || ||||||||||||||||||||||  |||||||||| | ||||||||||||||||||||||||||||| |||||||    
T  39467980 tccttcatctggccttcaaatttctcctcttttgattcaaactccttcttccggccttcaagctgcatctcttttgactctagctccattgcccgtcctt 39467881  T
Q  217 caagttgcatctcttttgtgtcaagctcattca 249  Q
    ||| |||| ||| |||||  |||||||| ||||    
T  39467880 caacttgcttcttttttgattcaagctccttca 39467848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 237 - 364
Target Start/End: Original strand, 39198915 - 39199042
Alignment:
Q  237 tcaagctcattcatacgaccttcaagttccttctcctttgactcaaattcatttatacagtcttcaagctgcttctctctcaaatccagcttctttaccc 336  Q
    ||||||||||||||| ||||||||| ||||||||||||||| |||||||| || | || | |||||||||||||||||||| |||||||||||| | |||    
T  39198915 tcaagctcattcatatgaccttcaatttccttctcctttgattcaaattccttcaaacggccttcaagctgcttctctctcgaatccagcttctgtgccc 39199014  T
Q  337 attcttcatagtgtttctcctttgactc 364  Q
     ||||||| | || ||||| ||||||||    
T  39199015 gttcttcacactgcttctcttttgactc 39199042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 143 - 316
Target Start/End: Complemental strand, 39602763 - 39602590
Alignment:
Q  143 ctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactctagctccattgctcgtccttcaagttgcatctcttttgtgtcaagc 242  Q
    ||||||| ||| |||||||||| |||||||||||  |||||| |||||| ||| |||||||||||| |||||||||| |||| |||||||||  ||||||    
T  39602763 ctcttttaatttaaactccttctcccggccttcaaattgcatttcttttaactttagctccattgcccgtccttcaacttgcttctcttttgattcaagc 39602664  T
Q  243 tcattcatacgaccttcaagttccttctcctttgactcaaattcatttatacagtcttcaagctgcttctctct 316  Q
    |   || |||||||||||||||||| |  ||| || ||||| || || |||    |||||||||||||||||||    
T  39602663 tgcgtcgtacgaccttcaagttcctgcatcttagattcaaactccttcatatgtccttcaagctgcttctctct 39602590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 39391160 - 39391231
Alignment:
Q  151 attcaaactccttcacccggccttcatgttgcatctcttttgactctagctccattgctcgtccttcaagtt 222  Q
    ||||||| ||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  39391160 attcaaattccttcacccgaccttcatgttgcatcttttttgtctctagctccattgctcgtccttcaagtt 39391231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 3 - 165
Target Start/End: Complemental strand, 38793034 - 38792872
Alignment:
Q  3 ccttcaaattccttctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgctcct 102  Q
    |||||||||||   || |||||| |||||||| ||||  ||| |||||  ||| ||||||||  ||| ||| |||||||||||||||||| |||||| ||    
T  38793034 ccttcaaattctcgcttctttgagtcatgctccttcatccggtcttcattttggttctctttcaactcaagttccttcatttggctttcgaaatgcttct 38792935  T
Q  103 gtttcaatacatggtccttcatttggttttcaaaatccttctcttttgattcaaactccttca 165  Q
    ||||||||||  | |||||||||||| |||| || ||  ||||| |||| |||||||||||||    
T  38792934 gtttcaataccagctccttcatttggctttcgaattctctctctattgactcaaactccttca 38792872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 146 - 234
Target Start/End: Original strand, 39398616 - 39398704
Alignment:
Q  146 ttttgattcaaactccttcacccggccttcatgttgcatctcttttgactctagctccattgctcgtccttcaagttgcatctcttttg 234  Q
    |||||||| |||||| ||| ||||| ||||| |||||||||||||||| | |||||||||||| |||||||||| |||| |||||||||    
T  39398616 ttttgatttaaactcattctcccggacttcaagttgcatctcttttgagtttagctccattgcccgtccttcaacttgcttctcttttg 39398704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 39136677 - 39136598
Alignment:
Q  27 tcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgctcctgttt 106  Q
    |||||||| ||||||||||||||||||||| ||||||| |||| ||||||||| || ||||||||| |||||| ||||||    
T  39136677 tcatgctccttcaatcggccttcaagttgcctctctttcgactcaagctccttaatatggctttcgaaatgcttctgttt 39136598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 39192888 - 39192949
Alignment:
Q  142 tctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactctagctcc 203  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||| |||||||| ||||||    
T  39192888 tctcttttgattcaaacttcttcacccgaccttcatgttgcatctcgtttgactcaagctcc 39192949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 39198568 - 39198629
Alignment:
Q  142 tctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactctagctcc 203  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||| |||||||| ||||||    
T  39198568 tctcttttgattcaaacttcttcacccgaccttcatgttgcatctcgtttgactcaagctcc 39198629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 39220935 - 39220870
Alignment:
Q  184 tctcttttgactctagctccattgctcgtccttcaagttgcatctcttttgtgtcaagctcattca 249  Q
    |||||||||||||||||||||||||||||||||||| |||| | |||||||| |||||||| ||||    
T  39220935 tctcttttgactctagctccattgctcgtccttcaacttgcttttcttttgtatcaagctccttca 39220870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 39222375 - 39222292
Alignment:
Q  16 tctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgct 99  Q
    |||| ||||| | |||||| |||| | |||||||||||||||||||||| |||| || ||||||||||||||||||| ||||||    
T  39222375 tctcttttgatttatgctccttcacttggccttcaagttgcttctctttagactcaaactccttcatttggctttcgaaatgct 39222292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 234
Target Start/End: Complemental strand, 39467704 - 39467527
Alignment:
Q  57 ttctcttttgactgaagctccttcatttggctttcgcaatgctcctgtttcaatacatggtccttcatttggttttcaaaatccttctcttttgattcaa 156  Q
    ||||| |||||||  | |||||||| | |||||||  |||||| ||||||  ||||| | ||||||  ||||  |||||| | || |  |||||||| ||    
T  39467704 ttctcctttgactctaactccttcaatcggctttcaaaatgcttctgttttgatacaagctccttctcttggccttcaaatttctccagttttgatttaa 39467605  T
Q  157 actccttcacccggccttcatgttgcatctcttttgactctagctccattgctcgtccttcaagttgcatctcttttg 234  Q
    |||| ||| ||||| ||||| |||||||||||||||| | |||||||||||| | |||||||| |||| ||| |||||    
T  39467604 actcattctcccggacttcaagttgcatctcttttgagtttagctccattgcccttccttcaacttgcttctgttttg 39467527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 45 - 165
Target Start/End: Original strand, 39415559 - 39415679
Alignment:
Q  45 ccttcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgctcctgtttcaatacatggtccttcatttggttttcaaaatccttct 144  Q
    |||||| ||||||||||||||| || |||||||||||||   |||| | |||||| ||||||  || |  | ||||||||||||  |||||| ||| |||    
T  39415559 ccttcatgttgcttctcttttgcctcaagctccttcattctccttttgaaatgcttctgttttgatgccagttccttcatttggccttcaaattccctct 39415658  T
Q  145 cttttgattcaaactccttca 165  Q
    ||||||||| |||||||||||    
T  39415659 cttttgatttaaactccttca 39415679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 393 - 460
Target Start/End: Complemental strand, 39220726 - 39220659
Alignment:
Q  393 ttctcttttgactcaagttctttaacccgacctttaaatttcttctgctttgactcaaattccttcat 460  Q
    |||||||||||||||||||| |||| |||| | | ||||  |||||||||||||||||||||||||||    
T  39220726 ttctcttttgactcaagttccttaaaccgatcatcaaatcgcttctgctttgactcaaattccttcat 39220659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 39221243 - 39221164
Alignment:
Q  2 gccttcaaattccttctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctccttca 81  Q
    |||||||| ||||||||||||||| |||||||| |||||||| ||||||| || ||||| |||||| | || ||||||||    
T  39221243 gccttcaagttccttctcctttgattcatgctccttcaatcgaccttcaaattccttctgttttgattcaaactccttca 39221164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 39221770 - 39221691
Alignment:
Q  117 tccttcatttggttttcaaaatccttctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactc 196  Q
    ||||||||||||  |||||| ||  ||||||||||| ||  ||||||||||| ||||||||||||| |||||||||||||    
T  39221770 tccttcatttggccttcaaattctctctcttttgatccatgctccttcacccagccttcatgttgcttctcttttgactc 39221691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 196
Target Start/End: Original strand, 39390148 - 39390227
Alignment:
Q  117 tccttcatttggttttcaaaatccttctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactc 196  Q
    ||||||||||||  |||||||||  ||||||| ||||||  ||||||||| |||| |||||||||| |||||||||||||    
T  39390148 tccttcatttggccttcaaaatctctctctttggattcatgctccttcactcggctttcatgttgcttctcttttgactc 39390227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 196
Target Start/End: Original strand, 39390568 - 39390647
Alignment:
Q  117 tccttcatttggttttcaaaatccttctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactc 196  Q
    ||||||||||||  |||||| ||  ||||||||||||||  ||||||||| |||| |||||||||| |||||||||||||    
T  39390568 tccttcatttggccttcaaattctctctcttttgattcatgctccttcactcggctttcatgttgcttctcttttgactc 39390647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 39136957 - 39136879
Alignment:
Q  125 ttggttttcaaaatccttctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactctagctcc 203  Q
    |||| ||||||| ||  ||||||||||| ||  ||||||||||||||||||||| ||| ||||||||||||| ||||||    
T  39136957 ttggctttcaaattctctctcttttgatgcatgctccttcacccggccttcatgctgcttctcttttgactcaagctcc 39136879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 117 - 203
Target Start/End: Original strand, 39415121 - 39415207
Alignment:
Q  117 tccttcatttggttttcaaaatccttctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactctagctcc 203  Q
    ||||||| |||| |||| |||| ||||| || |||||| | ||||||||| || |||||||||||| ||||||||||||| ||||||    
T  39415121 tccttcagttggctttcgaaatgcttcttttctgattccagctccttcactcgaccttcatgttgcttctcttttgactcaagctcc 39415207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 459
Target Start/End: Original strand, 39199014 - 39199095
Alignment:
Q  378 cgttcttgacacagcttctcttttgactcaagttctttaacccgacctttaaatttcttctgctttgactcaaattccttca 459  Q
    ||||||| |||| |||||||||||||||| | ||| ||||||||| | | ||||  |||||||||||| |||||||||||||    
T  39199014 cgttcttcacactgcttctcttttgactcgatttccttaacccgatcatcaaatcgcttctgctttgattcaaattccttca 39199095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 39221759 - 39221670
Alignment:
Q  2 gccttcaaattccttctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctccttcatttggctttc 91  Q
    ||||||||||||  |||| |||||  ||||||| ||||  | ||||||| |||||||||||||||||| || ||||||||| ||||||||    
T  39221759 gccttcaaattctctctcttttgatccatgctccttcacccagccttcatgttgcttctcttttgactcaaactccttcatctggctttc 39221670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 39390792 - 39390857
Alignment:
Q  131 ttcaaaatccttctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactc 196  Q
    |||||| ||||||| |||||||||||| |||||||| ||||||||| ||||  |||||||||||||    
T  39390792 ttcaaattccttcttttttgattcaaattccttcactcggccttcaagttgactctcttttgactc 39390857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 166
Target Start/End: Complemental strand, 39451519 - 39451374
Alignment:
Q  21 tttgactcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgctcctgtttcaatacatggtcct 120  Q
    ||||| |||||||| ||||| |||| ||||||||||||||| ||||| | ||| |||| |||  |||||||  |||| | |||||| ||| |    ||||    
T  39451519 tttgattcatgctccttcaaccggctttcaagttgcttctcatttgagtcaaggtcctccatccggctttcataatgtttctgttttaattccaactcct 39451420  T
Q  121 tcatttggttttcaaaatccttctcttttgattcaaactccttcac 166  Q
    |||||||  ||||||| || || ||||||| |||||||||||||||    
T  39451419 tcatttgactttcaaactctttttcttttgtttcaaactccttcac 39451374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 39415161 - 39415221
Alignment:
Q  31 gctcattcaatcggccttcaagttgcttctcttttgactgaagctccttcatttggctttc 91  Q
    |||| |||| ||| |||||| |||||||||||||||||| ||||||||||||| |||||||    
T  39415161 gctccttcactcgaccttcatgttgcttctcttttgactcaagctccttcattcggctttc 39415221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 39221923 - 39221872
Alignment:
Q  48 tcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgct 99  Q
    ||||||||||||||||| |||| || ||||||||||||||||||| ||||||    
T  39221923 tcaagttgcttctctttagactcaaactccttcatttggctttcgaaatgct 39221872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 39222133 - 39222082
Alignment:
Q  48 tcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgct 99  Q
    ||||||||||||||||| |||| || ||||||||||||||||||| ||||||    
T  39222133 tcaagttgcttctctttagactcaaactccttcatttggctttcgaaatgct 39222082  T

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Target: chr2; HSP #40
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 38792782 - 38792672
Alignment:
Q  3 ccttcaaattccttctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgctcct 102  Q
    |||||||||||  |||| ||||| || ||||| ||||  |||||||||  |||||| ||||| |||| ||| ||||||||| || ||||| || ||| ||    
T  38792782 ccttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtccttcattcggttttcgaaaagcttct 38792683  T
Q  103 gtttcaataca 113  Q
    |||||||||||    
T  38792682 gtttcaataca 38792672  T

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Target: chr2; HSP #41
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 117 - 194
Target Start/End: Original strand, 39390358 - 39390435
Alignment:
Q  117 tccttcatttggttttcaaaatccttctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgac 194  Q
    ||||||||||||  |||||| ||  ||||||||||| ||  ||||||||| |||| |||||||||| |||||||||||    
T  39390358 tccttcatttggccttcaaattctctctcttttgatccatgctccttcactcggctttcatgttgcttctcttttgac 39390435  T

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Target: chr2; HSP #42
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 39415283 - 39415368
Alignment:
Q  27 tcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgctcctgtttcaatac 112  Q
    |||||||| ||||||||| |||||  ||||||  |||| |||| |||||| |||| |||||||||  |||||| ||||||||||||    
T  39415283 tcatgctccttcaatcggacttcatcttgctttgctttcgactcaagctctttcacttggctttctaaatgcttctgtttcaatac 39415368  T

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Target: chr2; HSP #43
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 39415530 - 39415591
Alignment:
Q  142 tctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactctagctcc 203  Q
    |||||||||||||| ||||||||||  | |||||||||||| ||||||||| ||| ||||||    
T  39415530 tctcttttgattcacactccttcacttgaccttcatgttgcttctcttttgcctcaagctcc 39415591  T

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Target: chr2; HSP #44
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 39415768 - 39415845
Alignment:
Q  2 gccttcaaattccttctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctcctt 79  Q
    ||||||||||||  |||| |||||  ||||||||||||  ||||||||| | |||||||||||||| | |||||||||    
T  39415768 gccttcaaattctctctcttttgatgcatgctcattcacccggccttcatgctgcttctcttttgattcaagctcctt 39415845  T

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Target: chr2; HSP #45
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 39416045 - 39416100
Alignment:
Q  27 tcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctccttcat 82  Q
    |||||||| |||||| ||||| ||||||||||||| || |||| ||||||||||||    
T  39416045 tcatgctccttcaattggcctccaagttgcttctcattagactcaagctccttcat 39416100  T

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Target: chr2; HSP #46
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 39136951 - 39136877
Alignment:
Q  5 ttcaaattccttctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctcctt 79  Q
    |||||||||  |||| |||||  ||||||| ||||  ||||||||| | |||||||||||||||| |||||||||    
T  39136951 ttcaaattctctctcttttgatgcatgctccttcacccggccttcatgctgcttctcttttgactcaagctcctt 39136877  T

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Target: chr2; HSP #47
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 39192917 - 39192963
Alignment:
Q  45 ccttcaagttgcttctcttttgactgaagctccttcatttggctttc 91  Q
    |||||| ||||| |||| ||||||| |||||||||||||||||||||    
T  39192917 ccttcatgttgcatctcgtttgactcaagctccttcatttggctttc 39192963  T

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Target: chr2; HSP #48
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 39198597 - 39198643
Alignment:
Q  45 ccttcaagttgcttctcttttgactgaagctccttcatttggctttc 91  Q
    |||||| ||||| |||| ||||||| |||||||||||||||||||||    
T  39198597 ccttcatgttgcatctcgtttgactcaagctccttcatttggctttc 39198643  T

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Target: chr2; HSP #49
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 39390369 - 39390435
Alignment:
Q  2 gccttcaaattccttctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttgac 68  Q
    ||||||||||||  |||| |||||  ||||||| |||| ||||| |||| |||||||||||||||||    
T  39390369 gccttcaaattctctctcttttgatccatgctccttcactcggctttcatgttgcttctcttttgac 39390435  T

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Target: chr2; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 39390791 - 39390868
Alignment:
Q  4 cttcaaattccttctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctccttca 81  Q
    |||||||||||||||  ||||| |||   || |||| |||||||||||||||  |||||||||||| || ||||||||    
T  39390791 cttcaaattccttcttttttgattcaaattccttcactcggccttcaagttgactctcttttgactcaaactccttca 39390868  T

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Target: chr2; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 39415782 - 39415843
Alignment:
Q  142 tctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactctagctcc 203  Q
    ||||||||||| ||  ||| ||||||||||||||||| ||| |||||||||| || ||||||    
T  39415782 tctcttttgatgcatgctcattcacccggccttcatgctgcttctcttttgattcaagctcc 39415843  T

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Target: chr2; HSP #52
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 39422180 - 39422229
Alignment:
Q  42 cggccttcaagttgcttctcttttgactgaagctccttcatttggctttc 91  Q
    ||||| ||||||||||||||||| |||| ||| ||||||||| |||||||    
T  39422180 cggccatcaagttgcttctctttagactcaaggtccttcattcggctttc 39422229  T

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Target: chr2; HSP #53
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 468
Target Start/End: Complemental strand, 39602557 - 39602480
Alignment:
Q  391 gcttctcttttgactcaagttctttaacccgacctttaaatttcttctgctttgactcaaattccttcattagagcac 468  Q
    |||||||||||||||||||||| || ||| |||||| || || |||||   ||||||| |||||||| ||| ||||||    
T  39602557 gcttctcttttgactcaagttccttgacctgaccttcaagttgcttctttattgactcgaattcctttatttgagcac 39602480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #54
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 39137091 - 39137043
Alignment:
Q  117 tccttcatttggttttcaaaatccttctcttttgattcaaactccttca 165  Q
    ||||||||||||  |||||| ||| |||||||||||| |||||||||||    
T  39137091 tccttcatttggccttcaaattccatctcttttgatttaaactccttca 39137043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #55
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 39137348 - 39137300
Alignment:
Q  145 cttttgattcaaactccttcacccggccttcatgttgcatctcttttga 193  Q
    |||||||||||  |||| |||||||||||||||||||  ||||||||||    
T  39137348 cttttgattcatgctccatcacccggccttcatgttgtttctcttttga 39137300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #56
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 39220822 - 39220758
Alignment:
Q  3 ccttcaaattccttctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttga 67  Q
    ||||||| ||||||||||||||| |||   |||||||  ||||||||||| ||||||||| ||||    
T  39220822 ccttcaagttccttctcctttgattcagattcattcacacggccttcaagctgcttctctcttga 39220758  T

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Target: chr2; HSP #57
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 39458532 - 39458496
Alignment:
Q  130 tttcaaaatccttctcttttgattcaaactccttcac 166  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  39458532 tttcaaattccttctcttttgattcaaaatccttcac 39458496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #58
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 39458612 - 39458568
Alignment:
Q  62 ttttgactgaagctccttcatttggctttcgcaatgctcctgttt 106  Q
    |||||||| ||||||||||||| |||||||| |||||| ||||||    
T  39458612 ttttgactcaagctccttcattcggctttcgaaatgcttctgttt 39458568  T

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Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 19807063 - 19806959
Alignment:
Q  2 gccttcaaattccttctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgctcc 101  Q
    |||||||||||| |  || | ||| |||||||| ||||||||||||||||||||| ||||||| |||| ||||||||| || ||||||||| |||||| |    
T  19807063 gccttcaaattcttgttcttctgattcatgctccttcaatcggccttcaagttgcctctctttcgactcaagctccttaatatggctttcgaaatgcttc 19806964  T
Q  102 tgttt 106  Q
    |||||    
T  19806963 tgttt 19806959  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 121 - 203
Target Start/End: Complemental strand, 19807322 - 19807240
Alignment:
Q  121 tcatttggttttcaaaatccttctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactctagctcc 203  Q
    |||||||| ||||||| ||  ||||||||||| ||  |||||||| |||||||||||| ||| ||||||||||||| ||||||    
T  19807322 tcatttggctttcaaattctctctcttttgatgcatgctccttcatccggccttcatgctgcttctcttttgactcaagctcc 19807240  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 19807312 - 19807238
Alignment:
Q  5 ttcaaattccttctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctcctt 79  Q
    |||||||||  |||| |||||  ||||||| ||||  ||||||||| | |||||||||||||||| |||||||||    
T  19807312 ttcaaattctctctcttttgatgcatgctccttcatccggccttcatgctgcttctcttttgactcaagctcctt 19807238  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 51575207 - 51575155
Alignment:
Q  143 ctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgact 195  Q
    |||||||||||||||||||||||| || |||||| ||||  ||||||||||||    
T  51575207 ctcttttgattcaaactccttcactcgaccttcaagttgattctcttttgact 51575155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 176
Target Start/End: Complemental strand, 51574629 - 51574591
Alignment:
Q  138 tccttctcttttgattcaaactccttcacccggccttca 176  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  51574629 tcctcctcttttgattcaaactccttcacccgaccttca 51574591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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