View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3629_low_7 (Length: 471)

Name: NF3629_low_7
Description: NF3629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3629_low_7
NF3629_low_7
[»] chr4 (31 HSPs)
chr4 (12-122)||(31033032-31033142)
chr4 (340-453)||(31032559-31032672)
chr4 (397-453)||(31027996-31028052)
chr4 (14-84)||(31503312-31503382)
chr4 (393-453)||(31017975-31018035)
chr4 (12-72)||(31527261-31527321)
chr4 (187-233)||(39343610-39343656)
chr4 (306-351)||(20650582-20650627)
chr4 (187-248)||(23639759-23639820)
chr4 (187-248)||(23645417-23645478)
chr4 (187-248)||(46714528-46714589)
chr4 (306-351)||(53323947-53323992)
chr4 (187-248)||(54127343-54127404)
chr4 (12-84)||(31018608-31018680)
chr4 (397-453)||(31157635-31157691)
chr4 (20-60)||(31478168-31478208)
chr4 (187-217)||(31032936-31032966)
chr4 (194-236)||(39288994-39289036)
chr4 (187-248)||(5609203-5609264)
chr4 (187-248)||(13716451-13716512)
chr4 (195-248)||(20566485-20566538)
chr4 (306-351)||(33177499-33177544)
chr4 (187-248)||(34844759-34844820)
chr4 (306-351)||(38114290-38114335)
chr4 (187-248)||(40058853-40058914)
chr4 (306-351)||(44289850-44289895)
chr4 (187-248)||(45787705-45787766)
chr4 (306-351)||(47309606-47309651)
chr4 (295-351)||(52947828-52947885)
chr4 (187-248)||(52983754-52983815)
chr4 (306-346)||(7617496-7617536)
[»] chr2 (25 HSPs)
chr2 (15-85)||(17440010-17440080)
chr2 (187-248)||(14486960-14487021)
chr2 (187-248)||(31778166-31778227)
chr2 (306-346)||(23496737-23496777)
chr2 (187-248)||(15038094-15038155)
chr2 (306-351)||(31771488-31771533)
chr2 (309-351)||(18672363-18672405)
chr2 (187-248)||(6006891-6006952)
chr2 (187-248)||(11941211-11941272)
chr2 (306-351)||(14201042-14201087)
chr2 (187-236)||(14946925-14946974)
chr2 (187-248)||(25293294-25293355)
chr2 (187-236)||(28194139-28194188)
chr2 (306-351)||(29809408-29809453)
chr2 (306-351)||(30784356-30784401)
chr2 (306-351)||(31436209-31436254)
chr2 (187-248)||(35171935-35171996)
chr2 (306-351)||(40364962-40365007)
chr2 (215-248)||(41314126-41314159)
chr2 (187-248)||(44946054-44946115)
chr2 (194-246)||(13747508-13747560)
chr2 (304-340)||(19058719-19058755)
chr2 (187-247)||(41329978-41330038)
chr2 (204-248)||(43963882-43963926)
chr2 (306-346)||(44286762-44286802)
[»] chr6 (24 HSPs)
chr6 (14-84)||(33401451-33401521)
chr6 (15-76)||(31561996-31562057)
chr6 (15-84)||(33263468-33263537)
chr6 (306-351)||(26356703-26356748)
chr6 (15-84)||(33286376-33286445)
chr6 (20-77)||(33388879-33388936)
chr6 (308-351)||(3914502-3914545)
chr6 (306-337)||(30492895-30492926)
chr6 (306-351)||(939016-939061)
chr6 (187-248)||(1345070-1345131)
chr6 (306-351)||(2087609-2087654)
chr6 (187-248)||(3222637-3222698)
chr6 (392-453)||(9167197-9167258)
chr6 (187-248)||(9239110-9239171)
chr6 (306-351)||(10915475-10915520)
chr6 (187-248)||(21148512-21148573)
chr6 (392-453)||(33644189-33644250)
chr6 (306-351)||(33744740-33744785)
chr6 (187-248)||(34147481-34147542)
chr6 (187-248)||(34160097-34160158)
chr6 (187-247)||(9690639-9690699)
chr6 (196-248)||(16531283-16531335)
chr6 (188-248)||(17149458-17149518)
chr6 (306-354)||(28476269-28476317)
[»] scaffold0160 (1 HSPs)
scaffold0160 (187-236)||(29144-29193)
[»] chr5 (29 HSPs)
chr5 (187-248)||(4603912-4603973)
chr5 (187-248)||(32059441-32059502)
chr5 (194-248)||(24158174-24158228)
chr5 (187-248)||(30485963-30486024)
chr5 (303-343)||(18261253-18261293)
chr5 (194-248)||(10869573-10869627)
chr5 (309-351)||(38693547-38693589)
chr5 (195-248)||(930495-930548)
chr5 (306-351)||(1683243-1683288)
chr5 (306-351)||(2005196-2005241)
chr5 (306-351)||(4426194-4426239)
chr5 (187-248)||(7085627-7085688)
chr5 (306-351)||(8337015-8337060)
chr5 (187-248)||(8484662-8484723)
chr5 (306-351)||(10463909-10463954)
chr5 (187-248)||(18207342-18207403)
chr5 (187-248)||(19145413-19145474)
chr5 (187-248)||(19456212-19456273)
chr5 (187-248)||(21236363-21236424)
chr5 (187-236)||(22648169-22648218)
chr5 (187-248)||(22693070-22693131)
chr5 (306-351)||(24637017-24637062)
chr5 (187-248)||(27487555-27487616)
chr5 (187-248)||(27498732-27498793)
chr5 (187-248)||(37495189-37495250)
chr5 (306-351)||(40158437-40158482)
chr5 (187-248)||(41351105-41351166)
chr5 (306-354)||(14049833-14049881)
chr5 (309-337)||(43440954-43440982)
[»] chr1 (17 HSPs)
chr1 (187-248)||(52135261-52135322)
chr1 (187-248)||(1486555-1486616)
chr1 (187-247)||(37351454-37351514)
chr1 (195-248)||(27159220-27159273)
chr1 (306-345)||(7565257-7565296)
chr1 (187-248)||(4621238-4621299)
chr1 (306-351)||(12255802-12255847)
chr1 (306-351)||(13501378-13501423)
chr1 (199-248)||(16899638-16899687)
chr1 (306-351)||(19791411-19791456)
chr1 (187-248)||(24122158-24122219)
chr1 (306-351)||(26020477-26020522)
chr1 (195-248)||(30677311-30677364)
chr1 (187-248)||(34778474-34778535)
chr1 (306-351)||(51561425-51561470)
chr1 (306-351)||(52493700-52493745)
chr1 (212-248)||(1379032-1379068)
[»] chr8 (24 HSPs)
chr8 (195-245)||(34694584-34694634)
chr8 (306-351)||(5695989-5696034)
chr8 (306-351)||(36470901-36470946)
chr8 (295-351)||(17842634-17842690)
chr8 (306-337)||(6018223-6018254)
chr8 (187-248)||(2639412-2639473)
chr8 (187-248)||(4718784-4718845)
chr8 (306-351)||(5250466-5250511)
chr8 (306-351)||(5765792-5765837)
chr8 (187-248)||(7557952-7558013)
chr8 (187-248)||(8765527-8765588)
chr8 (306-351)||(10410019-10410064)
chr8 (187-248)||(18128652-18128713)
chr8 (187-248)||(20306047-20306108)
chr8 (187-248)||(21092680-21092741)
chr8 (187-248)||(21603369-21603430)
chr8 (306-351)||(27875523-27875568)
chr8 (306-351)||(28015704-28015749)
chr8 (306-351)||(28755251-28755296)
chr8 (308-337)||(32243863-32243892)
chr8 (306-351)||(38706519-38706564)
chr8 (212-248)||(2166835-2166871)
chr8 (187-247)||(28193614-28193674)
chr8 (187-247)||(42328144-42328204)
[»] scaffold1175 (1 HSPs)
scaffold1175 (187-248)||(2427-2488)
[»] scaffold0049 (1 HSPs)
scaffold0049 (187-248)||(66889-66950)
[»] chr3 (29 HSPs)
chr3 (187-248)||(6127588-6127648)
chr3 (306-351)||(34995702-34995747)
chr3 (187-248)||(48977523-48977584)
chr3 (187-247)||(50731238-50731298)
chr3 (187-247)||(50781556-50781616)
chr3 (192-247)||(4252402-4252457)
chr3 (191-246)||(30908490-30908545)
chr3 (205-248)||(33793587-33793630)
chr3 (187-248)||(10190743-10190804)
chr3 (187-248)||(15566501-15566562)
chr3 (187-247)||(10083820-10083880)
chr3 (212-248)||(51532924-51532960)
chr3 (308-351)||(8575981-8576024)
chr3 (194-248)||(30695254-30695307)
chr3 (308-354)||(33476269-33476315)
chr3 (194-248)||(55371302-55371356)
chr3 (187-248)||(4048085-4048146)
chr3 (187-248)||(8097280-8097341)
chr3 (187-248)||(24407396-24407457)
chr3 (306-351)||(25250186-25250231)
chr3 (187-236)||(25379908-25379957)
chr3 (187-248)||(26174248-26174309)
chr3 (306-351)||(39562627-39562672)
chr3 (306-351)||(44287845-44287890)
chr3 (306-351)||(44808918-44808963)
chr3 (187-248)||(53848435-53848496)
chr3 (212-248)||(23890674-23890710)
chr3 (187-247)||(49258263-49258323)
chr3 (306-354)||(54268923-54268971)
[»] scaffold0014 (1 HSPs)
scaffold0014 (306-354)||(123263-123311)
[»] chr7 (33 HSPs)
chr7 (309-351)||(14990628-14990670)
chr7 (309-351)||(15420239-15420281)
chr7 (187-248)||(654706-654767)
chr7 (187-236)||(2344450-2344499)
chr7 (306-351)||(6331068-6331113)
chr7 (187-248)||(7175863-7175924)
chr7 (187-248)||(27312291-27312352)
chr7 (306-351)||(37539958-37540003)
chr7 (306-354)||(6588856-6588904)
chr7 (187-242)||(17279676-17279731)
chr7 (187-233)||(21574103-21574149)
chr7 (187-233)||(23330740-23330786)
chr7 (309-351)||(44167875-44167917)
chr7 (205-246)||(674455-674496)
chr7 (306-351)||(4926547-4926592)
chr7 (306-351)||(7238654-7238699)
chr7 (187-248)||(7275416-7275477)
chr7 (306-351)||(10620598-10620643)
chr7 (187-248)||(16374133-16374194)
chr7 (306-351)||(18059178-18059223)
chr7 (187-248)||(22120027-22120088)
chr7 (306-351)||(22378536-22378581)
chr7 (195-248)||(31197729-31197782)
chr7 (187-248)||(31712903-31712964)
chr7 (187-236)||(32849742-32849791)
chr7 (306-351)||(36019840-36019885)
chr7 (306-351)||(38159124-38159169)
chr7 (187-248)||(38372981-38373042)
chr7 (306-351)||(38599140-38599185)
chr7 (187-248)||(40542911-40542972)
chr7 (306-351)||(43597562-43597607)
chr7 (187-248)||(47381030-47381090)
chr7 (187-235)||(22696473-22696521)
[»] scaffold0026 (1 HSPs)
scaffold0026 (204-248)||(5966-6010)
[»] scaffold0006 (1 HSPs)
scaffold0006 (314-345)||(158666-158697)
[»] scaffold1408 (1 HSPs)
scaffold1408 (399-453)||(1077-1131)
[»] scaffold0428 (1 HSPs)
scaffold0428 (399-453)||(6823-6877)
[»] scaffold0024 (1 HSPs)
scaffold0024 (312-354)||(47935-47977)
[»] scaffold1160 (1 HSPs)
scaffold1160 (306-351)||(1332-1377)
[»] scaffold0640 (1 HSPs)
scaffold0640 (306-351)||(3970-4015)
[»] scaffold0328 (1 HSPs)
scaffold0328 (187-248)||(13048-13109)
[»] scaffold0148 (1 HSPs)
scaffold0148 (309-354)||(35442-35487)
[»] scaffold0734 (1 HSPs)
scaffold0734 (306-346)||(2929-2969)
[»] scaffold0459 (1 HSPs)
scaffold0459 (187-247)||(10696-10755)


Alignment Details
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 12 - 122
Target Start/End: Complemental strand, 31033142 - 31033032
Alignment:
Q  12 atgaattgagatatgttgagtggactgaatatcctttcatgtatttgcctacaagttttcaccccaatcaactatatgtttttcgtccttacaaaattgg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31033142 atgaattgagatatgttgagtggactgaatatcctttcatgtatttgcctacaagttttcaccccaatcaactatatatttttcgtccttacaaaattgg 31033043  T
Q  112 gaccttataag 122  Q
    |||||||||||    
T  31033042 gaccttataag 31033032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 340 - 453
Target Start/End: Complemental strand, 31032672 - 31032559
Alignment:
Q  340 tgaattagatataaaaagtacatttactaatatttataatgtttttaaatgtttgtgaaaatctaataagcatacccaactacatatttagtctcacctc 439  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  31032672 tgaattagatataaaaagtacatttactagtatttataatgtttttaaatgtttgtgaaaatctaataagcatacccaacaacatatttggtctcacctc 31032573  T
Q  440 tcttaaatatctaa 453  Q
    ||||||||||||||    
T  31032572 tcttaaatatctaa 31032559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 397 - 453
Target Start/End: Complemental strand, 31028052 - 31027996
Alignment:
Q  397 aaaatctaataagcatacccaactacatatttagtctcacctctcttaaatatctaa 453  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||    
T  31028052 aaaatctaataagcatacctaacaacatatttggtctcacctctcttaaatatctaa 31027996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 31503312 - 31503382
Alignment:
Q  14 gaattgagatatgttgagtggactgaatatcctttcatgtatttgcctacaagttttcaccccaatcaact 84  Q
    ||||| ||||||||||| |||| |||||||||||||| |||||||||  |||||||||| || ||||||||    
T  31503312 gaattaagatatgttgaatggagtgaatatcctttcaagtatttgccgtcaagttttcagccaaatcaact 31503382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 453
Target Start/End: Complemental strand, 31018035 - 31017975
Alignment:
Q  393 tgtgaaaatctaataagcatacccaactacatatttagtctcacctctcttaaatatctaa 453  Q
    |||| |||||| |||||||||||||||  |||||||  |||||||||||||||||||||||    
T  31018035 tgtgtaaatctgataagcatacccaacagcatatttgttctcacctctcttaaatatctaa 31017975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 31527321 - 31527261
Alignment:
Q  12 atgaattgagatatgttgagtggactgaatatcctttcatgtatttgcctacaagttttca 72  Q
    ||||||| |||||||||||||||   |||||||||||||||||||||||  ||||||||||    
T  31527321 atgaattaagatatgttgagtggcgggaatatcctttcatgtatttgccatcaagttttca 31527261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 39343656 - 39343610
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatc 233  Q
    |||||||||||||||| ||||||| ||||||| ||||||||||||||    
T  39343656 aaactcagtatccgatccaaggacagactaatttgaggggaccaatc 39343610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 20650582 - 20650627
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| |||||||| ||||    
T  20650582 catttactaaaatttagaattttttaacatgaaatgaattaaatat 20650627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 23639820 - 23639759
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| |||||||||||    
T  23639820 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgtccacttgc 23639759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 23645478 - 23645417
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| |||||||||||    
T  23645478 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgtccacttgc 23645417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 46714589 - 46714528
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| | ||||||||| |||||||||||||||| || ||||||||    
T  46714589 aaactcggtatccgattcaagaattgactaatccgaggggaccaatcccaccgcccacttgc 46714528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 53323992 - 53323947
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| |||||||| ||||    
T  53323992 catttactaaaatttagaattttttaacatgaaatgaattaaatat 53323947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 54127343 - 54127404
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||||||||||| | |||| || |||||||| |||||||||||||||| || ||||||||    
T  54127343 aaactcagtatccggtccaagaaccgactaatccgaggggaccaatcccaccgcccacttgc 54127404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 31018680 - 31018608
Alignment:
Q  12 atgaattgagatatgttgagtggactgaatatcctttcatgtatttgcctacaagttttcaccccaatcaact 84  Q
    ||||||||||||||||||| ||||    ||||||||||| |||||||||||  |||||||| ||||| |||||    
T  31018680 atgaattgagatatgttgaatggaacagatatcctttcacgtatttgcctaagagttttcagcccaaccaact 31018608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 453
Target Start/End: Complemental strand, 31157691 - 31157635
Alignment:
Q  397 aaaatctaataagcatacccaactacatatttagtctcacctctcttaaatatctaa 453  Q
    |||||||| |||||||||| ||| ||||| || |||||| |||||||||||||||||    
T  31157691 aaaatctagtaagcataccgaacaacatacttggtctcagctctcttaaatatctaa 31157635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 31478168 - 31478208
Alignment:
Q  20 agatatgttgagtggactgaatatcctttcatgtatttgcc 60  Q
    |||||||||||||||| |||||||||||||| |||||||||    
T  31478168 agatatgttgagtggagtgaatatcctttcaagtatttgcc 31478208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 217
Target Start/End: Complemental strand, 31032966 - 31032936
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaa 217  Q
    |||||||||||||||||||||||||||||||    
T  31032966 aaactcagtatccgatgcaaggactgactaa 31032936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 39289036 - 39288994
Alignment:
Q  194 gtatccgatgcaaggactgactaatctgaggggaccaatccca 236  Q
    ||||||||||||| ||| ||||||||||| |||||||||||||    
T  39289036 gtatccgatgcaaagaccgactaatctgaagggaccaatccca 39288994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 5609203 - 5609264
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| ||||||| |||||||| |||||||||||    
T  5609203 aaactcggtatccgatccaagaatcgactaatccgaggggatcaatcccaccgtccacttgc 5609264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 13716451 - 13716512
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||||||||||||| |||| |||||| ||||  || |||||||||||| || ||||||||    
T  13716451 aaactcagtatccgattcaagaactgaccaatccaagaggaccaatcccaccgcccacttgc 13716512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 20566538 - 20566485
Alignment:
Q  195 tatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||||| |||| |  ||||||||||||||||||||||||| || ||||||||    
T  20566538 tatccgatccaagaatcgactaatctgaggggaccaatcccagcgcccacttgc 20566485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 33177499 - 33177544
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| | |||||| ||||    
T  33177499 catttactaaaatttagaattttttaacatgaaacgaattaaatat 33177544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 34844759 - 34844820
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  34844759 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgc 34844820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 38114290 - 38114335
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| | |||||| ||||    
T  38114290 catttactaaaatttaaaattttttaacatgaaacgaattaaatat 38114335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 40058853 - 40058914
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  40058853 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgc 40058914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 44289895 - 44289850
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    ||||||||||||| |||||||||||||||||| || ||||| ||||    
T  44289895 catttactaaaatctataattttttaacatgaaataaattaaatat 44289850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 45787705 - 45787766
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||  |||||||||||||||| |||||||||||    
T  45787705 aaactcggtatccgatccaagaatcgactaattcgaggggaccaatcccaccgtccacttgc 45787766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 47309651 - 47309606
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| | |||||| ||||    
T  47309651 catttactaaaatttagaattttttaacatgaaacgaattaaatat 47309606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 351
Target Start/End: Original strand, 52947828 - 52947885
Alignment:
Q  295 tataaacagtccatttactaaaatttataa-ttttttaacatgagatgaattagatat 351  Q
    |||||| ||| |||||||||||||||| || |||||||||||||||| ||||| ||||    
T  52947828 tataaaaagttcatttactaaaatttagaatttttttaacatgagataaattaaatat 52947885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 52983815 - 52983754
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  52983815 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgc 52983754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 7617496 - 7617536
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaatta 346  Q
    |||||||||||||||| ||||||||||||||| | ||||||    
T  7617496 catttactaaaatttagaattttttaacatgaaacgaatta 7617536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 17440010 - 17440080
Alignment:
Q  15 aattgagatatgttgagtggactgaatatcctttcatgtatttgcctacaagttttcaccccaatcaacta 85  Q
    |||| ||||||||||||||| || |||||||||||| ||||||||| |||||||||||||||||| |||||    
T  17440010 aattaagatatgttgagtggcctaaatatcctttcaagtatttgccaacaagttttcaccccaatgaacta 17440080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 14487021 - 14486960
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| ||||||| |||||||| |||||||||||||||| || ||||||||    
T  14487021 aaactcggtatccgatccaaggaccgactaatccgaggggaccaatcccaccgcccacttgc 14486960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 31778227 - 31778166
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| ||||||||||||||| ||||||||| || |||||||||||    
T  31778227 aaactcggtatccgatccaagaactgactaatctgagaggaccaatctcaccgtccacttgc 31778166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 23496777 - 23496737
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaatta 346  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  23496777 catttactaaaatatataattttttaacatgagatgaatta 23496737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 15038155 - 15038094
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  ||||||||||||||||||||||||| || ||||||||    
T  15038155 aaactcggtatccgatccaagaatcgactaatctgaggggaccaatcccaccgcccacttgc 15038094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 31771533 - 31771488
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| |||||||| ||||    
T  31771533 catttactaaaatttaaaattttttaacatgaaatgaattaaatat 31771488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 351
Target Start/End: Complemental strand, 18672405 - 18672363
Alignment:
Q  309 ttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    ||||||||||||||||||||||||||||| | |||||| ||||    
T  18672405 ttactaaaatttataattttttaacatgaaacgaattaaatat 18672363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 6006891 - 6006952
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||| ||| ||||||  ||||||||||||| |||||||| || |||||||||||    
T  6006891 aaactcggtatctgattcaaggatcgactaatctgaggagaccaatcacaccgtccacttgc 6006952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 11941211 - 11941272
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  11941211 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgc 11941272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 14201042 - 14201087
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||| ||||||||| ||||||||||||||| |||||||| ||||    
T  14201042 catttaataaaatttagaattttttaacatgaaatgaattaaatat 14201087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 14946974 - 14946925
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatccca 236  Q
    |||||| || |||||| |||  ||||||||||||||||||||||||||||    
T  14946974 aaactcggtctccgatccaaaaactgactaatctgaggggaccaatccca 14946925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 25293355 - 25293294
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  25293355 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccatcgcccacttgc 25293294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 28194139 - 28194188
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatccca 236  Q
    |||||| ||||||||| ||||||| ||||||||||| | |||||||||||    
T  28194139 aaactcggtatccgatccaaggaccgactaatctgacgagaccaatccca 28194188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 29809408 - 29809453
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| | |||||| ||||    
T  29809408 catttactaaaatttagaattttttaacatgaaaggaattaaatat 29809453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 30784401 - 30784356
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| | |||||| ||||    
T  30784401 catttactaaaatttagaattttttaacatgaaacgaattaaatat 30784356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 31436254 - 31436209
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| | |||||| ||||    
T  31436254 catttactaaaatttagaattttttaacatgaaacgaattaaatat 31436209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 35171996 - 35171935
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  35171996 aaactcggtatccgattcaagaatcgactaatccgaggggaccaatcccaccgcccacttgc 35171935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 40364962 - 40365007
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| | |||||| ||||    
T  40364962 catttactaaaatttagaattttttaacatgaaacgaattaaatat 40365007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 41314159 - 41314126
Alignment:
Q  215 taatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||||||||||||||||||| |||||||||||    
T  41314159 taatctgaggggaccaatcccaccgtccacttgc 41314126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 44946054 - 44946115
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  44946054 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgc 44946115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 13747508 - 13747560
Alignment:
Q  194 gtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccactt 246  Q
    ||||||||| ||||||  ||| ||||||||||| ||||||||| |||||||||    
T  13747508 gtatccgatccaaggatcgacaaatctgaggggcccaatcccaccgtccactt 13747560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 340
Target Start/End: Original strand, 19058719 - 19058755
Alignment:
Q  304 tccatttactaaaatttataattttttaacatgagat 340  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  19058719 tccatttattaaaatttagaattttttaacatgagat 19058755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 41330038 - 41329978
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttg 247  Q
    |||||| ||||||| | |||| || |||||||||||||||||||||| || || |||||||    
T  41330038 aaactcggtatccggtccaagaaccgactaatctgaggggaccaatctcaccgcccacttg 41329978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 43963882 - 43963926
Alignment:
Q  204 caaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||||  |||||||||||||| ||||||||| |||||||||||    
T  43963882 caaggaccaactaatctgaggggtccaatcccaccgtccacttgc 43963926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 44286762 - 44286802
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaatta 346  Q
    |||||||||||||||| ||||||||||||||| | ||||||    
T  44286762 catttactaaaatttacaattttttaacatgaaacgaatta 44286802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 33401521 - 33401451
Alignment:
Q  14 gaattgagatatgttgagtggactgaatatcctttcatgtatttgcctacaagttttcaccccaatcaact 84  Q
    ||||| ||||||||||| |||  |||||||||||||| ||||||||| |||||||||||||||||| ||||    
T  33401521 gaattaagatatgttgattggcatgaatatcctttcaagtatttgccaacaagttttcaccccaatgaact 33401451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 31561996 - 31562057
Alignment:
Q  15 aattgagatatgttgagtggactgaatatcctttcatgtatttgcctacaagttttcacccc 76  Q
    |||| |||||||||||||||  |||||||||||||| |||||||||  ||||||||||||||    
T  31561996 aattaagatatgttgagtggcttgaatatcctttcaagtatttgccatcaagttttcacccc 31562057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 33263537 - 33263468
Alignment:
Q  15 aattgagatatgttgagtggactgaatatcctttcatgtatttgcctacaagttttcaccccaatcaact 84  Q
    ||||||||||||||||||||  |||||||||||  | |||||||||  ||||||||||||||||| ||||    
T  33263537 aattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaact 33263468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 26356748 - 26356703
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| |||||||| ||||    
T  26356748 catttactaaaatttaaaattttttaacatgaaatgaattaaatat 26356703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 33286445 - 33286376
Alignment:
Q  15 aattgagatatgttgagtggactgaatatcctttcatgtatttgcctacaagttttcaccccaatcaact 84  Q
    |||| ||||||||| ||||||||| |||||||||||  ||||||||  ||| ||||||||||||| ||||    
T  33286445 aattaagatatgttcagtggactggatatcctttcaaatatttgccatcaaattttcaccccaatgaact 33286376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 33388936 - 33388879
Alignment:
Q  20 agatatgttgagtggactgaatatcctttcatgtatttgcctacaagttttcacccca 77  Q
    |||||||||||||||| | | |||||||||| |||||||||  |||||||||||||||    
T  33388936 agatatgttgagtggaattattatcctttcaagtatttgccatcaagttttcacccca 33388879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 351
Target Start/End: Original strand, 3914502 - 3914545
Alignment:
Q  308 tttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||| ||||||||||||||| || ||||||||||    
T  3914502 tttactaaaatttagaattttttaacatgaaataaattagatat 3914545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 337
Target Start/End: Complemental strand, 30492926 - 30492895
Alignment:
Q  306 catttactaaaatttataattttttaacatga 337  Q
    ||||||||||||||||||||||||||||||||    
T  30492926 catttactaaaatttataattttttaacatga 30492895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 939061 - 939016
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| | ||||||||||||| |||||||| ||||    
T  939061 catttactaaaatttaaatttttttaacatgaaatgaattaaatat 939016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 1345131 - 1345070
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  ||||||||  ||||||||||||||| |||||||||||    
T  1345131 aaactcggtatccgatccaagaatcgactaatccaaggggaccaatcccaccgtccacttgc 1345070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 2087654 - 2087609
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||||  |||||| ||||    
T  2087654 catttactaaaatttagaattttttaacatgagccgaattaaatat 2087609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 3222637 - 3222698
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  3222637 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgc 3222698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 453
Target Start/End: Complemental strand, 9167258 - 9167197
Alignment:
Q  392 ttgtgaaaatctaataagcatacccaactacatatttagtctcacctctcttaaatatctaa 453  Q
    ||||| |||||||||||| ||||||||| |||||||  |||| | |||||||||| ||||||    
T  9167258 ttgtggaaatctaataagaatacccaacaacatattcggtcttagctctcttaaagatctaa 9167197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 9239171 - 9239110
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  9239171 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgc 9239110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 10915520 - 10915475
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| | |||||| ||||    
T  10915520 catttactaaaatttagaattttttaacatgaaacgaattaaatat 10915475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 21148512 - 21148573
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  21148512 aaactcggtatccgattcaagaatcgactaatccgaggggaccaatcccaccgcccacttgc 21148573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 453
Target Start/End: Original strand, 33644189 - 33644250
Alignment:
Q  392 ttgtgaaaatctaataagcatacccaactacatatttagtctcacctctcttaaatatctaa 453  Q
    ||||||||||||  |||||||||||||| ||||||| ||||| | ||||||| || ||||||    
T  33644189 ttgtgaaaatctggtaagcatacccaacaacatattcagtcttagctctcttcaagatctaa 33644250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 33744740 - 33744785
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    ||||||||||||| |||||||||||||||||| || ||||| ||||    
T  33744740 catttactaaaatctataattttttaacatgaaataaattaaatat 33744785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 34147542 - 34147481
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  34147542 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgc 34147481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 34160158 - 34160097
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  34160158 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgc 34160097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 9690639 - 9690699
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttg 247  Q
    |||||| ||||||||| |||| |  |||||||| ||| |||||||||||| ||||||||||    
T  9690639 aaactcggtatccgatccaagaatcgactaatccgagaggaccaatcccaccgtccacttg 9690699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 16531335 - 16531283
Alignment:
Q  196 atccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    ||||||| |||| |||||||||| ||||||||||||||| | |||| ||||||    
T  16531335 atccgatccaagaactgactaatttgaggggaccaatcctaccgtcaacttgc 16531283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 17149458 - 17149518
Alignment:
Q  188 aactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    ||||| ||||| ||| ||||||| |||||||  |||||||||||||||| ||| |||||||    
T  17149458 aactcggtatctgattcaaggaccgactaattcgaggggaccaatcccaccgttcacttgc 17149518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 354
Target Start/End: Original strand, 28476269 - 28476317
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatataaa 354  Q
    |||||||||||||||| ||||| ||||||||| | |||||| |||||||    
T  28476269 catttactaaaatttagaatttattaacatgaaaagaattaaatataaa 28476317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 29144 - 29193
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatccca 236  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  29144 aaactcggtatccgatccaaggactgactaatctgaggggaccaatccca 29193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 4603973 - 4603912
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| ||||||| |||||||| |||||||||||||||| |||||||||||    
T  4603973 aaactcggtatccgatccaaggaccgactaatccgaggggaccaatcccaccgtccacttgc 4603912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 32059441 - 32059502
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| ||||||| |||||||| |||||||||||||||| || ||||||||    
T  32059441 aaactcggtatccgatccaaggaccgactaatccgaggggaccaatcccaccgcccacttgc 32059502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 24158174 - 24158228
Alignment:
Q  194 gtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    ||||||||| ||||||| |||||||||||||||||||||| || || ||||||||    
T  24158174 gtatccgattcaaggaccgactaatctgaggggaccaatctcaccgcccacttgc 24158228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 30486024 - 30485963
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| | ||||||||| |||||||||||||||| || ||||||||    
T  30486024 aaactcggtatccgatccaagaattgactaatccgaggggaccaatcccaccgcccacttgc 30485963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 343
Target Start/End: Original strand, 18261253 - 18261293
Alignment:
Q  303 gtccatttactaaaatttataattttttaacatgagatgaa 343  Q
    ||||||||||||||||||| ||||||||||||||| |||||    
T  18261253 gtccatttactaaaatttagaattttttaacatgaaatgaa 18261293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 10869573 - 10869627
Alignment:
Q  194 gtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    ||||||||| |||| || |||||||| |||||||||||||||| || ||||||||    
T  10869573 gtatccgatccaagaaccgactaatccgaggggaccaatcccaccgcccacttgc 10869627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 38693547 - 38693589
Alignment:
Q  309 ttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    ||||||||||||||||||||||||||||| | |||||| ||||    
T  38693547 ttactaaaatttataattttttaacatgaaacgaattaaatat 38693589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 248
Target Start/End: Original strand, 930495 - 930548
Alignment:
Q  195 tatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||||| ||||||| |||||||| ||||||||||||| ||  ||||||||||    
T  930495 tatccgatccaaggaccgactaatccgaggggaccaatcacactgtccacttgc 930548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 1683243 - 1683288
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| | |||||| ||||    
T  1683243 catttactaaaatttagaattttttaacatgaaacgaattaaatat 1683288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 2005241 - 2005196
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    ||||||||||||| |||||||||||||||||| || ||||| ||||    
T  2005241 catttactaaaatctataattttttaacatgaaataaattaaatat 2005196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 4426239 - 4426194
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| | |||||| ||||    
T  4426239 catttactaaaatttagaattttttaacatgaaacgaattaaatat 4426194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 7085627 - 7085688
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  7085627 aaactcggtatccgattcaagaatcgactaatccgaggggaccaatcccaccgcccacttgc 7085688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 8337060 - 8337015
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| | |||||| ||||    
T  8337060 catttactaaaatttagaattttttaacatgaaacgaattaaatat 8337015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 8484662 - 8484723
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  8484662 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgc 8484723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 10463954 - 10463909
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| | |||||| ||||    
T  10463954 catttactaaaatttagaattttttaacatgaaacgaattaaatat 10463909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 18207403 - 18207342
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  18207403 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgc 18207342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 19145413 - 19145474
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| ||  ||||||| |||||||||||||||| || ||||||||    
T  19145413 aaactcggtatccgatccaagaaccaactaatccgaggggaccaatcccaccgcccacttgc 19145474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 19456212 - 19456273
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  19456212 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgc 19456273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 21236363 - 21236424
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  ||||||||||||||||| ||||||| || ||||||||    
T  21236363 aaactcggtatccgattcaagaatcgactaatctgaggggactaatcccaccgcccacttgc 21236424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 22648218 - 22648169
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatccca 236  Q
    |||||| ||||||||| ||| ||| |||||||||||||||| ||||||||    
T  22648218 aaactcggtatccgatccaaagaccgactaatctgaggggatcaatccca 22648169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 22693131 - 22693070
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  22693131 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgc 22693070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 24637017 - 24637062
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| | |||||| ||||    
T  24637017 catttactaaaatttagaattttttaacatgaaacgaattaaatat 24637062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 27487555 - 27487616
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  27487555 aaactctgtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgc 27487616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 27498732 - 27498793
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  27498732 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgc 27498793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 37495250 - 37495189
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  37495250 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgc 37495189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 40158482 - 40158437
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| | |||||| ||||    
T  40158482 catttactaaaatttagaattttttaacatgaaacgaattaaatat 40158437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 41351105 - 41351166
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  41351105 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgc 41351166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 354
Target Start/End: Original strand, 14049833 - 14049881
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatataaa 354  Q
    |||||||||| ||||| ||||||||||||| | |||||||| |||||||    
T  14049833 catttactaatatttaaaattttttaacatcaaatgaattaaatataaa 14049881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 337
Target Start/End: Original strand, 43440954 - 43440982
Alignment:
Q  309 ttactaaaatttataattttttaacatga 337  Q
    |||||||||||||||||||||||||||||    
T  43440954 ttactaaaatttataattttttaacatga 43440982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 52135322 - 52135261
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||||||||||||| |||| || ||||||| ||||||||||||||||| |||||||||||    
T  52135322 aaactcagtatccgatccaagaaccgactaatatgaggggaccaatcccaccgtccacttgc 52135261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 1486616 - 1486555
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| ||||||| |||||||| ||||||||| |||||| |||||||||||    
T  1486616 aaactcggtatccgatccaaggaccgactaatcggaggggaccgatcccaccgtccacttgc 1486555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 37351454 - 37351514
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttg 247  Q
    |||||| ||||||||| ||||||| |||||||| |||||||||||||||| || |||||||    
T  37351454 aaactcggtatccgatccaaggaccgactaatccgaggggaccaatcccaccgcccacttg 37351514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 27159273 - 27159220
Alignment:
Q  195 tatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||||| ||| ||  ||||||||||||||||||||||||| |||||||||||    
T  27159273 tatccgatccaaagatcgactaatctgaggggaccaatcccaccgtccacttgc 27159220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 345
Target Start/End: Original strand, 7565257 - 7565296
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaatt 345  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  7565257 catttactaaaatttagaattttttaacatgaaatgaatt 7565296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 4621238 - 4621299
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  4621238 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgc 4621299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 12255802 - 12255847
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||| |||||||||||| ||||||||||| ||||||||| ||||    
T  12255802 catttattaaaatttataagtttttaacatgcgatgaattaaatat 12255847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 13501423 - 13501378
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| | |||||| ||||    
T  13501423 catttactaaaatttagaattttttaacatgaaacgaattaaatat 13501378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 248
Target Start/End: Complemental strand, 16899687 - 16899638
Alignment:
Q  199 cgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||| ||||||| |||||||| ||||||||||||| || |||||||||||    
T  16899687 cgatccaaggaccgactaatccgaggggaccaatctcaccgtccacttgc 16899638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 19791456 - 19791411
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| | |||||| ||||    
T  19791456 catttactaaaatttagaattttttaacatgaaacgaattaaatat 19791411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 24122219 - 24122158
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  24122219 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgc 24122158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 26020477 - 26020522
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||| | |||||||| ||||    
T  26020477 catttactaaaatttagaattttttaacattaaatgaattaaatat 26020522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 30677364 - 30677311
Alignment:
Q  195 tatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| | |||| || ||||||||||||||||||||||||| || ||||||||    
T  30677364 tatccggtccaagaaccgactaatctgaggggaccaatcccaccgcccacttgc 30677311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 34778535 - 34778474
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  ||||||||  ||||||||||||||| |||||||||||    
T  34778535 aaactcggtatccgatccaagaatcgactaatccaaggggaccaatcccaccgtccacttgc 34778474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 51561425 - 51561470
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| | |||||| ||||    
T  51561425 catttactaaaatttagaattttttaacatgaaacgaattaaatat 51561470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 52493745 - 52493700
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| | |||||| ||||    
T  52493745 catttactaaaatttagaattttttaacatgaaacgaattaaatat 52493700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 1379068 - 1379032
Alignment:
Q  212 gactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||||||||||||||||||| || |||||||||||    
T  1379068 gactaatctgaggggaccaatctcaccgtccacttgc 1379032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 34694584 - 34694634
Alignment:
Q  195 tatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccact 245  Q
    |||||||| ||||||| ||||||||||||||||||||||||| ||||||||    
T  34694584 tatccgatccaaggacagactaatctgaggggaccaatcccaccgtccact 34694634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 5695989 - 5696034
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| |||||||||| ||||||||||||| ||||    
T  5695989 catttactaaaatttagaattttttaatatgagatgaattaaatat 5696034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 36470901 - 36470946
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| | |||||||||||    
T  36470901 catttactaaaatttagaattttttaacatgaaacgaattagatat 36470946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 351
Target Start/End: Complemental strand, 17842690 - 17842634
Alignment:
Q  295 tataaacagtccatttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||| ||| |||||||||||||||| ||||||||||||||| | |||||| ||||    
T  17842690 tataaaaagttcatttactaaaatttagaattttttaacatgaaacgaattaaatat 17842634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 337
Target Start/End: Complemental strand, 6018254 - 6018223
Alignment:
Q  306 catttactaaaatttataattttttaacatga 337  Q
    ||||||||||||||||||||||||||||||||    
T  6018254 catttactaaaatttataattttttaacatga 6018223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 2639412 - 2639473
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  2639412 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgc 2639473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 4718845 - 4718784
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  4718845 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgc 4718784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 5250466 - 5250511
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| | |||||| ||||    
T  5250466 catttactaaaatttagaattttttaacatgaaacgaattaaatat 5250511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 5765792 - 5765837
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    ||||||||||||| |||||||||||||||||| || ||||| ||||    
T  5765792 catttactaaaatctataattttttaacatgaaataaattaaatat 5765837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 7557952 - 7558013
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| |||||||||||||  |  |||||||  |||||||||||||||| |||||||||||    
T  7557952 aaactcggtatccgatgcaaaaatcgactaattcgaggggaccaatcccaccgtccacttgc 7558013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 8765527 - 8765588
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  8765527 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgc 8765588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 10410064 - 10410019
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    ||||||| |||||||| ||||||||||||||| |||||||| ||||    
T  10410064 catttaccaaaatttagaattttttaacatgaaatgaattaaatat 10410019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 18128713 - 18128652
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| |||| |||| |||| || |||||||||||| |||||||||||| || ||||||||    
T  18128713 aaactcggtattcgatccaagaaccgactaatctgagaggaccaatcccaccgcccacttgc 18128652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 20306108 - 20306047
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| ||||||  |||||||  |||||||||||||||| || ||||||||    
T  20306108 aaactcggtatccgatccaaggatcgactaattcgaggggaccaatcccaccgcccacttgc 20306047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 21092741 - 21092680
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| ||||||  |||||||  |||||||||||||||| || ||||||||    
T  21092741 aaactcggtatccgatccaaggatcgactaattcgaggggaccaatcccaccgcccacttgc 21092680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 21603430 - 21603369
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  21603430 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgc 21603369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 27875523 - 27875568
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||| | |||||||| ||||    
T  27875523 catttactaaaatttagaattttttaacattaaatgaattaaatat 27875568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 28015704 - 28015749
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||| | |||||||| ||||    
T  28015704 catttactaaaatttagaattttttaacattaaatgaattaaatat 28015749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 28755251 - 28755296
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    ||||||||||||| |||||||||||||||||| || ||||| ||||    
T  28755251 catttactaaaatctataattttttaacatgaaataaattaaatat 28755296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 337
Target Start/End: Complemental strand, 32243892 - 32243863
Alignment:
Q  308 tttactaaaatttataattttttaacatga 337  Q
    ||||||||||||||||||||||||||||||    
T  32243892 tttactaaaatttataattttttaacatga 32243863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 38706519 - 38706564
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| |  ||||||||||    
T  38706519 catttactaaaatttagaattttttaacatgaaacaaattagatat 38706564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 2166871 - 2166835
Alignment:
Q  212 gactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    ||||||||||||||||||||||||| || ||||||||    
T  2166871 gactaatctgaggggaccaatcccaccgcccacttgc 2166835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 28193674 - 28193614
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttg 247  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || |||||||    
T  28193674 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttg 28193614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 42328204 - 42328144
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttg 247  Q
    |||||| ||||||||| |||| |  |||||||  |||||||||||||||| ||||||||||    
T  42328204 aaactcggtatccgatccaagaatcgactaattcgaggggaccaatcccatcgtccacttg 42328144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1175 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold1175
Description:

Target: scaffold1175; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 2427 - 2488
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| ||||||| |||||||| |||||||||||||||| || ||||||||    
T  2427 aaactcggtatccgattcaaggacggactaatccgaggggaccaatcccaccgcccacttgc 2488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 66950 - 66889
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| ||||||| |||||||| |||||||||||||||| || ||||||||    
T  66950 aaactcggtatccgatccaaggaccgactaatccgaggggaccaatcccaccgcccacttgc 66889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 6127648 - 6127588
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||||||||||||| ||||||| ||||||| ||||||||||||||||| |||||| ||||    
T  6127648 aaactcagtatccgatacaaggac-gactaatttgaggggaccaatcccaccgtccatttgc 6127588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 34995747 - 34995702
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||    
T  34995747 catttactaaaatttagaattttttaacatgagatgaattaaatat 34995702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 48977584 - 48977523
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| ||||||| |||||||| |||||||||||||||| || ||||||||    
T  48977584 aaactcggtatccgatccaaggaccgactaatccgaggggaccaatcccaccgcccacttgc 48977523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 50731238 - 50731298
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttg 247  Q
    |||||| ||||||||| ||||||  ||||||||||||||||||||||||| || |||||||    
T  50731238 aaactcggtatccgatccaaggatcgactaatctgaggggaccaatcccaccgcccacttg 50731298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 50781616 - 50781556
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttg 247  Q
    |||||| ||||||||| ||||||  ||||||||||||||||||||||||| || |||||||    
T  50781616 aaactcggtatccgatccaaggatcgactaatctgaggggaccaatcccaccgcccacttg 50781556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 4252402 - 4252457
Alignment:
Q  192 cagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttg 247  Q
    ||||||||||| ||||||  |||||||| |||||||||||||||| ||||||||||    
T  4252402 cagtatccgatccaaggatcgactaatccgaggggaccaatcccaccgtccacttg 4252457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 30908545 - 30908490
Alignment:
Q  191 tcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccactt 246  Q
    ||||||| |||| |||||| |||||||||||||||||||||||||| |||| ||||    
T  30908545 tcagtattcgatccaaggaatgactaatctgaggggaccaatcccaccgtctactt 30908490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 248
Target Start/End: Complemental strand, 33793630 - 33793587
Alignment:
Q  205 aaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    ||||||||||||||| |||||||||||||||| |||||||||||    
T  33793630 aaggactgactaatccgaggggaccaatcccaccgtccacttgc 33793587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 10190743 - 10190804
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| |||||||||||    
T  10190743 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgtccacttgc 10190804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 15566501 - 15566562
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  ||||||||||||||||||||||||| || ||||||||    
T  15566501 aaactcggtatccgatccaagaatcgactaatctgaggggaccaatcccaccgcccacttgc 15566562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 10083820 - 10083880
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttg 247  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| ||||||||||    
T  10083820 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgtccacttg 10083880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 51532960 - 51532924
Alignment:
Q  212 gactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    ||||||||||||||||||||||||| |||||||||||    
T  51532960 gactaatctgaggggaccaatcccaccgtccacttgc 51532924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 351
Target Start/End: Original strand, 8575981 - 8576024
Alignment:
Q  308 tttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||| ||||||||||||||| |||||||| ||||    
T  8575981 tttactaaaatttagaattttttaacatgaaatgaattaaatat 8576024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 30695254 - 30695307
Alignment:
Q  194 gtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    ||||||||| ||||||| ||||||||||| ||||||||||||| || ||||||||    
T  30695254 gtatccgatccaaggaccgactaatctga-gggaccaatcccatcgcccacttgc 30695307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 354
Target Start/End: Original strand, 33476269 - 33476315
Alignment:
Q  308 tttactaaaatttataattttttaacatgagatgaattagatataaa 354  Q
    |||||||||||||| ||||||||||||||| || ||||| |||||||    
T  33476269 tttactaaaatttagaattttttaacatgaaataaattaaatataaa 33476315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 55371302 - 55371356
Alignment:
Q  194 gtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    ||||||||| ||||||  |||||||| |||||||||||||||| || ||||||||    
T  55371302 gtatccgatccaaggatcgactaatccgaggggaccaatcccaccgcccacttgc 55371356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 4048146 - 4048085
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |   ||||||| |||||||||||||||| |||||||||||    
T  4048146 aaactcggtatccgatccaagaatcaactaatccgaggggaccaatcccaccgtccacttgc 4048085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 8097280 - 8097341
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  8097280 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgc 8097341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 24407457 - 24407396
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  24407457 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgc 24407396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 25250231 - 25250186
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| | |||||| ||||    
T  25250231 catttactaaaatttagaattttttaacatgaaacgaattaaatat 25250186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 25379957 - 25379908
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatccca 236  Q
    |||||||||||||||| |||| |  |||||||| ||||||||||||||||    
T  25379957 aaactcagtatccgatccaagaatcgactaatccgaggggaccaatccca 25379908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 26174309 - 26174248
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  26174309 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgc 26174248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 39562627 - 39562672
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    ||||||||||||| |||||||||||||||||| || ||||| ||||    
T  39562627 catttactaaaatctataattttttaacatgaaataaattaaatat 39562672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 44287845 - 44287890
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    ||||| |||||||||| ||||||||||||||| |||||||| ||||    
T  44287845 catttgctaaaatttagaattttttaacatgaaatgaattaaatat 44287890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 44808918 - 44808963
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||| | |||||||| ||||    
T  44808918 catttactaaaatttagaattttttaacataaaatgaattaaatat 44808963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 53848435 - 53848496
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  53848435 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgc 53848496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 23890710 - 23890674
Alignment:
Q  212 gactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||||||||||||||||||| || |||||||||||    
T  23890710 gactaatctgaggggaccaatctcaccgtccacttgc 23890674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 49258263 - 49258323
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttg 247  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || |||||||    
T  49258263 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttg 49258323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 354
Target Start/End: Original strand, 54268923 - 54268971
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatataaa 354  Q
    ||||| |||||||||| ||||||||||||||| || ||||| |||||||    
T  54268923 catttcctaaaatttagaattttttaacatgaaataaattaaatataaa 54268971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 354
Target Start/End: Original strand, 123263 - 123311
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatataaa 354  Q
    |||||||||||||||| ||||||||||| |||||||||||| |||||||    
T  123263 catttactaaaatttaaaattttttaacttgagatgaattaaatataaa 123311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 14990628 - 14990670
Alignment:
Q  309 ttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    ||||||||||||||||||||||||||||| |||||||| ||||    
T  14990628 ttactaaaatttataattttttaacatgaaatgaattaaatat 14990670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 15420239 - 15420281
Alignment:
Q  309 ttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    ||||||||||||||||||||||||||||| |||||||| ||||    
T  15420239 ttactaaaatttataattttttaacatgaaatgaattaaatat 15420281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 654706 - 654767
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| || |||||||| |||||||||||||||| || ||||||||    
T  654706 aaactcggtatccgatccaagaaccgactaatccgaggggaccaatcccaccgcccacttgc 654767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 2344499 - 2344450
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatccca 236  Q
    |||||| ||||||||| ||||||| |||||||| ||||||||||||||||    
T  2344499 aaactcggtatccgatccaaggaccgactaatccgaggggaccaatccca 2344450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 6331113 - 6331068
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| |||||||| ||||    
T  6331113 catttactaaaatttagaattttttaacatgaaatgaattaaatat 6331068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 7175863 - 7175924
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||||||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  7175863 aaactcagtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgc 7175924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 27312352 - 27312291
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  ||||||||||||||||||||||||| || ||||||||    
T  27312352 aaactcggtatccgatccaagaatcgactaatctgaggggaccaatcccaccgcccacttgc 27312291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 37540003 - 37539958
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| |||||||| ||||    
T  37540003 catttactaaaatttagaattttttaacatgaaatgaattaaatat 37539958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 6588904 - 6588856
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatataaa 354  Q
    |||||||||||||||| ||||||||||||||| | |||||| |||||||    
T  6588904 catttactaaaatttagaattttttaacatgaaacgaattaaatataaa 6588856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 17279731 - 17279676
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtcc 242  Q
    |||||| ||||||||| ||| ||| ||||||| ||||||||||||||||| |||||    
T  17279731 aaactcggtatccgatccaaagaccgactaatttgaggggaccaatcccaccgtcc 17279676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 21574103 - 21574149
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatc 233  Q
    |||||| ||||||||| ||||||| |||||||| |||||||||||||    
T  21574103 aaactcggtatccgatccaaggaccgactaatccgaggggaccaatc 21574149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 23330740 - 23330786
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatc 233  Q
    |||||| ||||||||| |||||| |||||||| ||||||||||||||    
T  23330740 aaactcggtatccgatccaaggattgactaatttgaggggaccaatc 23330786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 44167875 - 44167917
Alignment:
Q  309 ttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    ||||||||||||| ||||||||||||||| |||||||| ||||    
T  44167875 ttactaaaatttagaattttttaacatgaaatgaattaaatat 44167917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 674455 - 674496
Alignment:
Q  205 aaggactgactaatctgaggggaccaatcccaacgtccactt 246  Q
    |||||| |||||||||||||||| |||||||| |||||||||    
T  674455 aaggaccgactaatctgaggggatcaatcccaccgtccactt 674496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 4926592 - 4926547
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| | |||||| ||||    
T  4926592 catttactaaaatttagaattttttaacatgaaacgaattaaatat 4926547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 7238654 - 7238699
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| | |||||| ||||    
T  7238654 catttactaaaatttagaattttttaacatgaaacgaattaaatat 7238699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 7275477 - 7275416
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  7275477 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgc 7275416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 10620598 - 10620643
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| | |||||| ||||    
T  10620598 catttactaaaatttagaattttttaacatgaaacgaattaaatat 10620643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 16374194 - 16374133
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| |||||| ||||    
T  16374194 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgtccatttgc 16374133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 18059223 - 18059178
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| | |||||| ||||    
T  18059223 catttactaaaatttagaattttttaacatgaaacgaattaaatat 18059178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 22120088 - 22120027
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  22120088 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgc 22120027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 22378536 - 22378581
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| | |||||| ||||    
T  22378536 catttactaaaatttagaattttttaacatgaaacgaattaaatat 22378581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 31197782 - 31197729
Alignment:
Q  195 tatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||||| |||| |  ||||||||||||||||||||||||| || ||||||||    
T  31197782 tatccgatccaagaatcgactaatctgaggggaccaatcccaccgaccacttgc 31197729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 31712903 - 31712964
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  31712903 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgc 31712964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 32849791 - 32849742
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatccca 236  Q
    |||||| ||||||||| |||| |  |||||||||||||||||||||||||    
T  32849791 aaactcggtatccgatccaagaatcgactaatctgaggggaccaatccca 32849742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 36019840 - 36019885
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| || |||||||||||| | |||||||||||    
T  36019840 catttactaaaatttagaactttttaacatgaaacgaattagatat 36019885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 38159169 - 38159124
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| | |||||| ||||    
T  38159169 catttactaaaatttagaattttttaacatgaaacgaattaaatat 38159124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 38372981 - 38373042
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||||||||| ||  ||||||| ||||||||  ||||| ||||||||| |||||||||||    
T  38372981 aaactcagtatctgacccaaggaccgactaatccaaggggtccaatcccaccgtccacttgc 38373042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 38599185 - 38599140
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    ||||||||||||| |||||||||||||||||| || ||||| ||||    
T  38599185 catttactaaaatctataattttttaacatgaaataaattaaatat 38599140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 40542911 - 40542972
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |  |||||||| |||||||||||||||| || ||||||||    
T  40542911 aaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgc 40542972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 43597562 - 43597607
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| | |||||| ||||    
T  43597562 catttactaaaatttagaattttttaacatgaaacgaattaaatat 43597607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 47381090 - 47381030
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||||||||||||| ||||||| ||||||| | | ||||||||||||| || ||||||||    
T  47381090 aaactcagtatccgattcaaggaccgactaat-tcaagggaccaatcccaccgcccacttgc 47381030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 22696521 - 22696473
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatccc 235  Q
    |||||| ||||||||| ||||||| |||||||| ||| |||||||||||    
T  22696521 aaactcggtatccgatccaaggaccgactaatccgagaggaccaatccc 22696473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 6010 - 5966
Alignment:
Q  204 caaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    ||||||| ||||||||||||| ||||||||||| |||||||||||    
T  6010 caaggaccgactaatctgaggtgaccaatcccaccgtccacttgc 5966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 345
Target Start/End: Complemental strand, 158697 - 158666
Alignment:
Q  314 aaaatttataattttttaacatgagatgaatt 345  Q
    ||||||||||||||||||||||||||||||||    
T  158697 aaaatttataattttttaacatgagatgaatt 158666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 453
Target Start/End: Complemental strand, 1131 - 1077
Alignment:
Q  399 aatctaataagcatacccaactacatatttagtctcacctctcttaaatatctaa 453  Q
    |||||| |||||||||||||| |||||||  |||| | |||||||||||||||||    
T  1131 aatctagtaagcatacccaacaacatattcggtcttagctctcttaaatatctaa 1077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 453
Target Start/End: Complemental strand, 6877 - 6823
Alignment:
Q  399 aatctaataagcatacccaactacatatttagtctcacctctcttaaatatctaa 453  Q
    |||||| |||||||||||||| |||||||  |||| | |||||||||||||||||    
T  6877 aatctagtaagcatacccaacaacatattcggtcttagctctcttaaatatctaa 6823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 354
Target Start/End: Original strand, 47935 - 47977
Alignment:
Q  312 ctaaaatttataattttttaacatgagatgaattagatataaa 354  Q
    |||||||||| ||||||||||||||| |||||||| |||||||    
T  47935 ctaaaatttagaattttttaacatgaaatgaattaaatataaa 47977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1160 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1160
Description:

Target: scaffold1160; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 1377 - 1332
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    |||||||||||||||| ||||||||||||||| | |||||| ||||    
T  1377 catttactaaaatttagaattttttaacatgaaacgaattaaatat 1332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 3970 - 4015
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaattagatat 351  Q
    ||||||||||||| |||||||||||||||||| || ||||| ||||    
T  3970 catttactaaaatctataattttttaacatgaaataaattaaatat 4015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 13048 - 13109
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttgc 248  Q
    |||||| ||||||||| |||| |   ||||||||||||||| |||||||| |||||||||||    
T  13048 aaactcggtatccgatccaagaatcaactaatctgaggggatcaatcccaccgtccacttgc 13109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 35487 - 35442
Alignment:
Q  309 ttactaaaatttataattttttaacatgagatgaattagatataaa 354  Q
    ||||||||||||| ||||||||||||||| | |||||| |||||||    
T  35487 ttactaaaatttagaattttttaacatgaaacgaattaaatataaa 35442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 2929 - 2969
Alignment:
Q  306 catttactaaaatttataattttttaacatgagatgaatta 346  Q
    ||||||||||||| |||||||||||||||||| || |||||    
T  2929 catttactaaaatctataattttttaacatgaaataaatta 2969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 10696 - 10755
Alignment:
Q  187 aaactcagtatccgatgcaaggactgactaatctgaggggaccaatcccaacgtccacttg 247  Q
    |||||| ||||||||| |||| | ||||||||  |||||||||||||||| ||||||||||    
T  10696 aaactcggtatccgat-caagaattgactaattcgaggggaccaatcccaccgtccacttg 10755  T

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