View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3629_low_8 (Length: 444)
Name: NF3629_low_8
Description: NF3629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3629_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 192 - 430
Target Start/End: Original strand, 41736662 - 41736900
Alignment:
| Q |
192 |
gacccagacaacccctagttgatccaacaatgttacatttaatcacatagcaagaagggagttgccaattcacctgcataattgtggtaagcaaggagca |
291 |
Q |
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| T |
41736662 |
gacccagacaacccctagttgatccaacaatgttacatttaatcacatagcaagaagggagttgccaattcacctgcataattgtggtaagcaaggagca |
41736761 |
T |
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| Q |
292 |
tcttagtgtttgcagtgaagctcatcacgccgcatgacgtttgtgctaacattttttctattaattctcccgggatgaatcaaaaaggaaatctttattg |
391 |
Q |
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| T |
41736762 |
tcttagtgtttgcagtgaagctcatcacgccgcatgacgtttgtgctaaaaaaaattctattaattctccagggatgaatcaaaaaggaaatctttattg |
41736861 |
T |
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| Q |
392 |
attccaccttcacttttttacaaagagaatgaatctttt |
430 |
Q |
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| T |
41736862 |
attccaccttcacttttttacaaagagaatgaatctttt |
41736900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 41736482 - 41736603
Alignment:
| Q |
12 |
agagaggctgttcctagaatcacatttaagccaaagactaagccctcccttttcaaaggtaatttctatggcatggatagctcccgtaatcttagcatat |
111 |
Q |
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| T |
41736482 |
agagaggctgttcctagaatcacatttaagccaaagactaagccctcccttttcaaaggtaatttctattccatggatagctcccgtaatcttagcaaat |
41736581 |
T |
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| Q |
112 |
aatgtcttatgattatgataac |
133 |
Q |
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| T |
41736582 |
aatgtattatgattatgataac |
41736603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 358 - 430
Target Start/End: Original strand, 16901262 - 16901334
Alignment:
| Q |
358 |
ctcccgggatgaatcaaaaaggaaatctttattgattccaccttcacttttttacaaagagaatgaatctttt |
430 |
Q |
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| T |
16901262 |
ctccagggatgaatcaaaaaagaaatctttattggttctacctcctcttttttacgaagagaatgaatctttt |
16901334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 358 - 430
Target Start/End: Original strand, 18349861 - 18349933
Alignment:
| Q |
358 |
ctcccgggatgaatcaaaaaggaaatctttattgattccaccttcacttttttacaaagagaatgaatctttt |
430 |
Q |
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| T |
18349861 |
ctccagggatgaatcaaaaaagaaatttttattggttctacctcctcttttttacgaagagaatgaatctttt |
18349933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 430
Target Start/End: Original strand, 2913071 - 2913137
Alignment:
| Q |
364 |
ggatgaatcaaaaaggaaatctttattgattccaccttcacttttttacaaagagaatgaatctttt |
430 |
Q |
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| T |
2913071 |
ggatgaatcaaaaaagaaatctttattggttttacctcctcttttttacgaagagaatgactctttt |
2913137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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