View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3630_low_10 (Length: 326)

Name: NF3630_low_10
Description: NF3630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3630_low_10
NF3630_low_10
[»] chr4 (1 HSPs)
chr4 (13-311)||(49765880-49766178)


Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 13 - 311
Target Start/End: Original strand, 49765880 - 49766178
Alignment:
Q  13 aatatctcttctattattctgatgattctctttagaagatcctttgctactaaaagctctcataggactagcgaaagcccaaccccaactctttccacca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49765880 aatatctcttctattattctgatgattctctttagaagatcctttgctactaaaagctctcataggactagcgaaagcccaaccccaactctttccacca 49765979  T
Q  113 cggttttgagaaactgtaacagaaccttgttttcctcctccatttacagcatcatcagcagaattagaagaaacccaataagatgaagtagatgaatttg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49765980 cggttttgagaaactgtaacagaaccttgttttcctcctccatttacagcatcatcagcagaattagaagaaacccaataagatgaagtagatgaatttg 49766079  T
Q  213 aagatgaagatgatgtcatcatgaaaccactgaatattcctccacaccttctaagtactctctctttcatgcaatgatggtgatggtggtggtggtctt 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49766080 aagatgaagatgatgtcatcatgaaaccactgaatattcctccacaccttctaagtactctctctttcatgcaatgatggtgatggtggtggtggtctt 49766178  T

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