View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3630_low_5 (Length: 518)
Name: NF3630_low_5
Description: NF3630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3630_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 16 - 506
Target Start/End: Complemental strand, 35052027 - 35051553
Alignment:
| Q |
16 |
ctgcacacttataagtaccgtgttccatactcaacaatgactattcgttctctcttgtgattagtaacatacaaattacaatcacaagacaattattatt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35052027 |
ctgcacacttataagtaccgtgttccatactcaacaatgactattcgttctctcttgtgattagtaacatacaaattacaatcacaagacaattattatt |
35051928 |
T |
|
| Q |
116 |
catcattcacattataactccagattatatacataacaaagactccactttacatgtatatatgaattgatgtatatatgaattggaaagaagcttatgg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35051927 |
catcattcacattataactccagattatatacataacaaagactccactttacatgtatatatgaa----------------ttggaaagaagcttatgg |
35051844 |
T |
|
| Q |
216 |
tttgaataaaatgatattcactgtggtgatgaaacatttgttgaagcagctactatagcaccctcaatcttattaatgcaagatttataaagaaatccaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35051843 |
tttgaataaaatgatattcactgtggtgatgaaacatttgttgaagcagctactatagcaccctcaatcttattaatgcaagatttataaagaaatccaa |
35051744 |
T |
|
| Q |
316 |
gataatccactaagctattctcagatacatcttctagaggattaatctcaaaagaccaatgaataagagctgaatcatcaccatagtcaacaagttttag |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35051743 |
gataatccactaagctattctcagatacatcttctagaggattaatctcaaaagaccaatgaataagagctgaatcatcaccatagtcaacaagttttag |
35051644 |
T |
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| Q |
416 |
tgtatttacagagccatccaaaccaacattacttgcttccattctataaacatagctatatgatgaaaaatcctttgaaatcaatctctct |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
35051643 |
tgtatttacagagccatccaaaccaacattacttgcttccattctataaacatagctatgtgatgaaaaatcctttgaaatcaacctctct |
35051553 |
T |
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