View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3630_low_6 (Length: 501)
Name: NF3630_low_6
Description: NF3630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3630_low_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 34568718 - 34568465
Alignment:
| Q |
18 |
catataatttccgtgtggatctgtcacagttgtcacaagtagcaacagataaactatgtgaaattaaattaaattaaagcttaaaaggtaaagctttgat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34568718 |
catataatttccgtgtggatctgtcacagttgtcacaagtagcaacagataaactatgtgaaattaaattaaattaaagcttaaaaggtaaagctttgat |
34568619 |
T |
|
| Q |
118 |
ttgcttacactacaaaatcaataatttatattatatacattttatgcattatttatgctgaataagccagccaagttgaaaagggaccttttttccttgt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34568618 |
ttgcttacactacaaaatcaataatttatattatatacattttatgcattatttatgctgaataagccagccaagttgaaaagggaccttttttccttgt |
34568519 |
T |
|
| Q |
218 |
ctttaagcctcaaagcctatatatagagaaatttcacacaaacttttcattcaa |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34568518 |
ctttaagcctcaaagcctatatatagagaaatttcacacaaacttttcattcaa |
34568465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 337 - 483
Target Start/End: Complemental strand, 34568399 - 34568253
Alignment:
| Q |
337 |
aaaatagttagtatgggtcttgagattgaacaagaacacccttgtgttgaactttcaaatattgcaacttctgaaactcatggagaaaattctccatact |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34568399 |
aaaatagttagtatgggtcttgagattgaacaagaacacccttgtgttgaactttcaaatattgcaacttctgaaactcatggagaaaattctccatact |
34568300 |
T |
|
| Q |
437 |
ttgctggatggaaagcctatgatgaaaacccttatcatgaaataact |
483 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34568299 |
ttgctggatggaaagcctatgatgaaaacccttatcatgaaataact |
34568253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 377 - 483
Target Start/End: Complemental strand, 42790626 - 42790520
Alignment:
| Q |
377 |
cttgtgttgaactttcaaatattgcaacttctgaaactcatggagaaaattctccatactttgctggatggaaagcctatgatgaaaacccttatcatga |
476 |
Q |
| |
|
||||||| |||||||||| ||||||| |||||| |||||||||||||| || || |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42790626 |
cttgtgtacaactttcaaacattgcaatttctgacactcatggagaaaactcaccctactttgctggatggaaagcatatgatgaaaacccttatcatga |
42790527 |
T |
|
| Q |
477 |
aataact |
483 |
Q |
| |
|
| ||||| |
|
|
| T |
42790526 |
attaact |
42790520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 377 - 483
Target Start/End: Complemental strand, 42800166 - 42800060
Alignment:
| Q |
377 |
cttgtgttgaactttcaaatattgcaacttctgaaactcatggagaaaattctccatactttgctggatggaaagcctatgatgaaaacccttatcatga |
476 |
Q |
| |
|
||||||| |||||||||| ||||||| |||||| |||||||||||||| || || |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42800166 |
cttgtgtacaactttcaaacattgcaatttctgacactcatggagaaaactcaccctactttgctggatggaaagcatatgatgaaaacccttatcatga |
42800067 |
T |
|
| Q |
477 |
aataact |
483 |
Q |
| |
|
| ||||| |
|
|
| T |
42800066 |
attaact |
42800060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University