View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3630_low_8 (Length: 385)

Name: NF3630_low_8
Description: NF3630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3630_low_8
NF3630_low_8
[»] chr4 (27 HSPs)
chr4 (59-354)||(2330490-2330775)
chr4 (87-143)||(7148750-7148807)
chr4 (87-142)||(28663407-28663463)
chr4 (101-139)||(36740886-36740924)
chr4 (87-140)||(52274171-52274225)
chr4 (87-139)||(488435-488488)
chr4 (87-142)||(54412098-54412154)
chr4 (101-148)||(34633513-34633560)
chr4 (87-141)||(39932805-39932860)
chr4 (101-140)||(43136683-43136722)
chr4 (102-145)||(48238055-48238098)
chr4 (87-148)||(28074338-28074400)
chr4 (109-139)||(35124355-35124385)
chr4 (109-139)||(35405653-35405683)
chr4 (109-142)||(3564185-3564218)
chr4 (112-141)||(3564354-3564383)
chr4 (109-142)||(9153670-9153703)
chr4 (112-145)||(21216392-21216425)
chr4 (110-139)||(22273761-22273790)
chr4 (113-146)||(38345727-38345760)
chr4 (109-142)||(38345909-38345942)
chr4 (109-142)||(52700631-52700664)
chr4 (92-143)||(825795-825847)
chr4 (112-140)||(948223-948251)
chr4 (109-145)||(1374451-1374487)
chr4 (109-141)||(12022987-12023019)
chr4 (109-141)||(32628747-32628779)
[»] chr5 (14 HSPs)
chr5 (87-141)||(1942990-1943045)
chr5 (62-154)||(42706763-42706862)
chr5 (101-148)||(28625453-28625500)
chr5 (87-141)||(40696981-40697036)
chr5 (96-144)||(41419619-41419667)
chr5 (109-140)||(1372081-1372112)
chr5 (87-148)||(6125260-6125322)
chr5 (109-143)||(11163357-11163391)
chr5 (109-147)||(28970166-28970204)
chr5 (109-146)||(3520590-3520627)
chr5 (87-135)||(10274260-10274309)
chr5 (109-142)||(31637164-31637197)
chr5 (112-148)||(1576779-1576815)
chr5 (112-148)||(1608000-1608036)
[»] chr1 (15 HSPs)
chr1 (63-141)||(28870204-28870283)
chr1 (101-146)||(45267440-45267485)
chr1 (101-142)||(36178515-36178556)
chr1 (90-135)||(38781059-38781104)
chr1 (112-143)||(7145207-7145238)
chr1 (2-44)||(7537050-7537092)
chr1 (109-139)||(26946193-26946223)
chr1 (109-147)||(26988117-26988155)
chr1 (109-142)||(16225474-16225507)
chr1 (103-148)||(48819272-48819317)
chr1 (112-140)||(994622-994650)
chr1 (112-140)||(26946014-26946042)
chr1 (112-140)||(26988296-26988324)
chr1 (101-141)||(37431146-37431186)
chr1 (8-40)||(49315807-49315839)
[»] chr2 (8 HSPs)
chr2 (92-143)||(9140651-9140703)
chr2 (109-143)||(38215987-38216021)
chr2 (101-142)||(17317158-17317199)
chr2 (103-143)||(18276909-18276949)
chr2 (116-148)||(29774897-29774929)
chr2 (89-139)||(37419899-37419950)
chr2 (96-133)||(35997287-35997324)
chr2 (109-141)||(12223981-12224013)
[»] scaffold0015 (1 HSPs)
scaffold0015 (87-142)||(48823-48878)
[»] chr8 (12 HSPs)
chr8 (109-148)||(32131399-32131438)
chr8 (87-140)||(34286614-34286668)
chr8 (92-144)||(9130937-9130990)
chr8 (87-143)||(28879036-28879093)
chr8 (101-140)||(9781196-9781235)
chr8 (112-143)||(11460796-11460827)
chr8 (104-143)||(18396914-18396953)
chr8 (109-142)||(2019737-2019770)
chr8 (87-135)||(32213073-32213122)
chr8 (112-140)||(11460851-11460879)
chr8 (110-142)||(19925477-19925509)
chr8 (103-143)||(35168359-35168399)
[»] chr7 (12 HSPs)
chr7 (87-140)||(47511024-47511078)
chr7 (87-147)||(29378619-29378680)
chr7 (109-141)||(30181516-30181548)
chr7 (96-139)||(29778433-29778476)
chr7 (109-140)||(38372525-38372556)
chr7 (109-147)||(22515595-22515633)
chr7 (87-145)||(14691350-14691409)
chr7 (87-135)||(33288150-33288199)
chr7 (112-144)||(1053974-1054006)
chr7 (87-142)||(1054119-1054175)
chr7 (112-140)||(23119850-23119878)
chr7 (112-140)||(29390461-29390489)
[»] chr6 (4 HSPs)
chr6 (87-143)||(2034280-2034337)
chr6 (109-143)||(11795524-11795558)
chr6 (87-143)||(21025278-21025335)
chr6 (112-140)||(25430854-25430882)
[»] scaffold0071 (1 HSPs)
scaffold0071 (108-143)||(18101-18136)
[»] chr3 (9 HSPs)
chr3 (108-143)||(15444055-15444090)
chr3 (109-140)||(29270328-29270359)
chr3 (109-140)||(34707801-34707832)
chr3 (100-139)||(37601092-37601131)
chr3 (87-144)||(45331346-45331404)
chr3 (96-130)||(52421070-52421104)
chr3 (100-141)||(35480447-35480488)
chr3 (109-141)||(10272088-10272120)
chr3 (112-140)||(35480312-35480340)
[»] scaffold0022 (1 HSPs)
scaffold0022 (95-144)||(89313-89362)
[»] scaffold0024 (1 HSPs)
scaffold0024 (109-141)||(97115-97147)


Alignment Details
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 59 - 354
Target Start/End: Original strand, 2330490 - 2330775
Alignment:
Q  59 tgcttttttataaactaccttgacaaatataatacata-aaatttatttacttgcataagctcaaaaataagtcaatccaaacgggtcctaggtcaaaaa 157  Q
    |||||||  ||||||||| ||||||||||||||||||| ||||||||||||||    ||||| |||||||||||||||||| |||| |||||||||| ||    
T  2330490 tgcttttacataaactacattgacaaatataatacatataaatttatttactt----aagctaaaaaataagtcaatccaagcgggccctaggtcaataa 2330585  T
Q  158 gtgacacatttnnnnnnnnnnnnnnnctctaaaataaatgatggtttccactttaatgtaattttaattatttattttcttgagcaagtatatcatcttg 257  Q
    |||||||||||                 || ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2330586 gtgacacattttgtaaaaaaa-------ctgaaataaatgatggttttaactttaatgtaattttaattatttattttcttgagcaagtatatcatcttg 2330678  T
Q  258 tttttaatgtgtgtaaaatggtagaatgagaaaattattcaaaaatattgaaagtatttaatagcagtatgatcttaaatctttcttctcatgtata 354  Q
    |||||||||||||| |||||||| ||||  |||||||||| ||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||    
T  2330679 tttttaatgtgtgtgaaatggtaaaatgcaaaaattattctaaaatattggaagtagttaatagcattatgatcttaaatctttcttctcatgtata 2330775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 7148807 - 7148750
Alignment:
Q  87 ataatacataaaat-ttatttacttgcataagctcaaaaataagtcaatccaaacggg 143  Q
    |||||||||||||  ||||||| ||||||||||||||||||||| |||||||||||||    
T  7148807 ataatacataaaagcttatttatttgcataagctcaaaaataagccaatccaaacggg 7148750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 87 - 142
Target Start/End: Complemental strand, 28663463 - 28663407
Alignment:
Q  87 ataatacataaaattt-atttacttgcataagctcaaaaataagtcaatccaaacgg 142  Q
    |||||||||||||  | ||||| ||||||||||||||||||||||||||||||||||    
T  28663463 ataatacataaaagctcatttatttgcataagctcaaaaataagtcaatccaaacgg 28663407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 139
Target Start/End: Complemental strand, 36740924 - 36740886
Alignment:
Q  101 ttatttacttgcataagctcaaaaataagtcaatccaaa 139  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  36740924 ttatttatttgcataagctcaaaaataagtcaatccaaa 36740886  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 52274171 - 52274225
Alignment:
Q  87 ataatacataaaa-tttatttacttgcataagctcaaaaataagtcaatccaaac 140  Q
    ||||||||||||| |||||||| ||||||||||||||||||||| |||| |||||    
T  52274171 ataatacataaaagtttatttatttgcataagctcaaaaataagccaattcaaac 52274225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 488435 - 488488
Alignment:
Q  87 ataatacataaaat-ttatttacttgcataagctcaaaaataagtcaatccaaa 139  Q
    |||||||||||||  ||| ||| |||||||||||||||||||||||||||||||    
T  488435 ataatacataaaagcttacttatttgcataagctcaaaaataagtcaatccaaa 488488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 142
Target Start/End: Original strand, 54412098 - 54412154
Alignment:
Q  87 ataatacataaaa-tttatttacttgcataagctcaaaaataagtcaatccaaacgg 142  Q
    ||||||||||||| |||||||| ||||||||| | ||||||||| ||||||||||||    
T  54412098 ataatacataaaaatttatttatttgcataagttaaaaaataagccaatccaaacgg 54412154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 34633513 - 34633560
Alignment:
Q  101 ttatttacttgcataagctcaaaaataagtcaatccaaacgggtccta 148  Q
    ||||||| |||| |||||| |||||||||||||||||||| |||||||    
T  34633513 ttatttatttgcgtaagcttaaaaataagtcaatccaaacaggtccta 34633560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 87 - 141
Target Start/End: Original strand, 39932805 - 39932860
Alignment:
Q  87 ataatacataaaa-tttatttacttgcataagctcaaaaataagtcaatccaaacg 141  Q
    ||||||||||||| |||||||| ||||||||| | ||||||||||||||| |||||    
T  39932805 ataatacataaaagtttatttatttgcataagtttaaaaataagtcaatcgaaacg 39932860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 140
Target Start/End: Original strand, 43136683 - 43136722
Alignment:
Q  101 ttatttacttgcataagctcaaaaataagtcaatccaaac 140  Q
    ||||||| | ||||||||||||||||||||||||||||||    
T  43136683 ttatttattcgcataagctcaaaaataagtcaatccaaac 43136722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 145
Target Start/End: Complemental strand, 48238098 - 48238055
Alignment:
Q  102 tatttacttgcataagctcaaaaataagtcaatccaaacgggtc 145  Q
    |||||| |||||||| ||||||||||||||||| ||||||||||    
T  48238098 tatttatttgcataaactcaaaaataagtcaattcaaacgggtc 48238055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 28074400 - 28074338
Alignment:
Q  87 ataatacataaaat-ttatttacttgcataagctcaaaaataagtcaatccaaacgggtccta 148  Q
    |||||||||||||  ||||||| ||||||||||  ||||||||||||||||||| ||| ||||    
T  28074400 ataatacataaaagcttatttatttgcataagcgaaaaaataagtcaatccaaatgggcccta 28074338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 139
Target Start/End: Complemental strand, 35124385 - 35124355
Alignment:
Q  109 ttgcataagctcaaaaataagtcaatccaaa 139  Q
    |||||||||||||||||||||||||||||||    
T  35124385 ttgcataagctcaaaaataagtcaatccaaa 35124355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 139
Target Start/End: Complemental strand, 35405683 - 35405653
Alignment:
Q  109 ttgcataagctcaaaaataagtcaatccaaa 139  Q
    |||||||||||||||||||||||||||||||    
T  35405683 ttgcataagctcaaaaataagtcaatccaaa 35405653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 142
Target Start/End: Complemental strand, 3564218 - 3564185
Alignment:
Q  109 ttgcataagctcaaaaataagtcaatccaaacgg 142  Q
    ||||||||||||||||| ||||||||||||||||    
T  3564218 ttgcataagctcaaaaacaagtcaatccaaacgg 3564185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 141
Target Start/End: Original strand, 3564354 - 3564383
Alignment:
Q  112 cataagctcaaaaataagtcaatccaaacg 141  Q
    ||||||||||||||||||||||||||||||    
T  3564354 cataagctcaaaaataagtcaatccaaacg 3564383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 142
Target Start/End: Original strand, 9153670 - 9153703
Alignment:
Q  109 ttgcataagctcaaaaataagtcaatccaaacgg 142  Q
    |||||||||||| |||||||||||||||||||||    
T  9153670 ttgcataagctctaaaataagtcaatccaaacgg 9153703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 145
Target Start/End: Original strand, 21216392 - 21216425
Alignment:
Q  112 cataagctcaaaaataagtcaatccaaacgggtc 145  Q
    |||||||| |||||||||||||||||||||||||    
T  21216392 cataagctaaaaaataagtcaatccaaacgggtc 21216425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 139
Target Start/End: Complemental strand, 22273790 - 22273761
Alignment:
Q  110 tgcataagctcaaaaataagtcaatccaaa 139  Q
    ||||||||||||||||||||||||||||||    
T  22273790 tgcataagctcaaaaataagtcaatccaaa 22273761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 146
Target Start/End: Complemental strand, 38345760 - 38345727
Alignment:
Q  113 ataagctcaaaaataagtcaatccaaacgggtcc 146  Q
    ||||||||||||||||| ||||||||||||||||    
T  38345760 ataagctcaaaaataagccaatccaaacgggtcc 38345727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 142
Target Start/End: Original strand, 38345909 - 38345942
Alignment:
Q  109 ttgcataagctcaaaaataagtcaatccaaacgg 142  Q
    ||||||||||||||| ||||||||||||||||||    
T  38345909 ttgcataagctcaaacataagtcaatccaaacgg 38345942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 142
Target Start/End: Original strand, 52700631 - 52700664
Alignment:
Q  109 ttgcataagctcaaaaataagtcaatccaaacgg 142  Q
    |||||||||||| |||||||||||||||||||||    
T  52700631 ttgcataagctctaaaataagtcaatccaaacgg 52700664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 143
Target Start/End: Original strand, 825795 - 825847
Alignment:
Q  92 acataaaat-ttatttacttgcataagctcaaaaataagtcaatccaaacggg 143  Q
    ||||||||| ||||||| ||||||||||| |||||| || |||||||||||||    
T  825795 acataaaatcttatttatttgcataagctaaaaaattagccaatccaaacggg 825847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 140
Target Start/End: Original strand, 948223 - 948251
Alignment:
Q  112 cataagctcaaaaataagtcaatccaaac 140  Q
    |||||||||||||||||||||||||||||    
T  948223 cataagctcaaaaataagtcaatccaaac 948251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 1374451 - 1374487
Alignment:
Q  109 ttgcataagctcaaaaataagtcaatccaaacgggtc 145  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  1374451 ttgcataagctcaaaaataagccaatccaaatgggtc 1374487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 12023019 - 12022987
Alignment:
Q  109 ttgcataagctcaaaaataagtcaatccaaacg 141  Q
    |||||||||||| ||||||||||||||||||||    
T  12023019 ttgcataagctctaaaataagtcaatccaaacg 12022987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 32628779 - 32628747
Alignment:
Q  109 ttgcataagctcaaaaataagtcaatccaaacg 141  Q
    ||||||||||||||||||||| |||||||||||    
T  32628779 ttgcataagctcaaaaataagacaatccaaacg 32628747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 1943045 - 1942990
Alignment:
Q  87 ataatacataaaat-ttatttacttgcataagctcaaaaataagtcaatccaaacg 141  Q
    |||||||||||||  ||||||||||||||||||||||||||||| |||||||||||    
T  1943045 ataatacataaaaacttatttacttgcataagctcaaaaataagccaatccaaacg 1942990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 154
Target Start/End: Complemental strand, 42706862 - 42706763
Alignment:
Q  62 ttttttataaactaccttgacaa----at--ataatacataaaat-ttatttacttgcataagctcaaaaataagtcaatccaaacgggtcctaggtcaa 154  Q
    |||||||||||||||||||||||    ||  ||||||| |||||  ||||||| ||||||||||||||||||||| ||||||||||||| |||| |||||    
T  42706862 ttttttataaactaccttgacaagcttatgaataatacttaaaagcttatttatttgcataagctcaaaaataagccaatccaaacgggccctatgtcaa 42706763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 28625500 - 28625453
Alignment:
Q  101 ttatttacttgcataagctcaaaaataagtcaatccaaacgggtccta 148  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||    
T  28625500 ttatttatttgcataagctaaaaaataagtcaatccaaacgggcccta 28625453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 40697036 - 40696981
Alignment:
Q  87 ataatacataaaat-ttatttacttgcataagctcaaaaataagtcaatccaaacg 141  Q
    |||||||||||||  ||||||| |||||||||||||||||||||||||| ||||||    
T  40697036 ataatacataaaaacttatttatttgcataagctcaaaaataagtcaattcaaacg 40696981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 41419619 - 41419667
Alignment:
Q  96 aaaatttatttacttgcataagctcaaaaataagtcaatccaaacgggt 144  Q
    |||| ||||||| || ||||||||||||| |||||||||||||||||||    
T  41419619 aaaacttatttattttcataagctcaaaagtaagtcaatccaaacgggt 41419667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 140
Target Start/End: Original strand, 1372081 - 1372112
Alignment:
Q  109 ttgcataagctcaaaaataagtcaatccaaac 140  Q
    ||||||||||||||||||||||||||||||||    
T  1372081 ttgcataagctcaaaaataagtcaatccaaac 1372112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 6125322 - 6125260
Alignment:
Q  87 ataatacataaaa-tttatttacttgcataagctcaaaaataagtcaatccaaacgggtccta 148  Q
    ||||||||||||| |||||||| || |||||| |||||||||||||||| | |||||| ||||    
T  6125322 ataatacataaaagtttatttatttacataagttcaaaaataagtcaattcgaacgggaccta 6125260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 11163357 - 11163391
Alignment:
Q  109 ttgcataagctcaaaaataagtcaatccaaacggg 143  Q
    ||||||||||| |||||||||||||||||||||||    
T  11163357 ttgcataagctaaaaaataagtcaatccaaacggg 11163391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 147
Target Start/End: Original strand, 28970166 - 28970204
Alignment:
Q  109 ttgcataagctcaaaaataagtcaatccaaacgggtcct 147  Q
    ||||||||||||||||||||| |||||||||| ||||||    
T  28970166 ttgcataagctcaaaaataagccaatccaaacaggtcct 28970204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 3520590 - 3520627
Alignment:
Q  109 ttgcataagctcaaaaataagtcaatccaaacgggtcc 146  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  3520590 ttgcataagctaaaaaataagtcaatccaaacaggtcc 3520627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 10274309 - 10274260
Alignment:
Q  87 ataatacataaaat-ttatttacttgcataagctcaaaaataagtcaatc 135  Q
    |||||| ||||||| ||||||| |||||||| ||||||||||||||||||    
T  10274309 ataatatataaaatcttatttatttgcataaactcaaaaataagtcaatc 10274260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 142
Target Start/End: Original strand, 31637164 - 31637197
Alignment:
Q  109 ttgcataagctcaaaaataagtcaatccaaacgg 142  Q
    ||||||||||||| ||||||||||||||||||||    
T  31637164 ttgcataagctcataaataagtcaatccaaacgg 31637197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 1576779 - 1576815
Alignment:
Q  112 cataagctcaaaaataagtcaatccaaacgggtccta 148  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  1576779 cataagctcaaaaataagccaatccaaacgggcccta 1576815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 148
Target Start/End: Complemental strand, 1608036 - 1608000
Alignment:
Q  112 cataagctcaaaaataagtcaatccaaacgggtccta 148  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  1608036 cataagctcaaaaataagccaatccaaacgggcccta 1608000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 141
Target Start/End: Complemental strand, 28870283 - 28870204
Alignment:
Q  63 tttttataaactaccttgacaaatataatacataaaa-tttatttacttgcataagctcaaaaataagtcaatccaaacg 141  Q
    |||| |||| |||| |||||||| ||||||||||||  |||||||| ||||||||||||||||||||| ||||| |||||    
T  28870283 ttttcataagctactttgacaaaaataatacataaatgtttatttatttgcataagctcaaaaataagccaatctaaacg 28870204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 45267485 - 45267440
Alignment:
Q  101 ttatttacttgcataagctcaaaaataagtcaatccaaacgggtcc 146  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||    
T  45267485 ttatttatttgcataagctcaaaaataagtcaatccaaacaggtcc 45267440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 36178556 - 36178515
Alignment:
Q  101 ttatttacttgcataagctcaaaaataagtcaatccaaacgg 142  Q
    ||||||| |||||||||||||||| |||||||||||||||||    
T  36178556 ttatttatttgcataagctcaaaagtaagtcaatccaaacgg 36178515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 38781104 - 38781059
Alignment:
Q  90 atacataaaatttatttacttgcataagctcaaaaataagtcaatc 135  Q
    |||||||||| ||||||| ||||||||||||||||||||| |||||    
T  38781104 atacataaaacttatttatttgcataagctcaaaaataagccaatc 38781059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 143
Target Start/End: Complemental strand, 7145238 - 7145207
Alignment:
Q  112 cataagctcaaaaataagtcaatccaaacggg 143  Q
    ||||||||||||||||||||||||||||||||    
T  7145238 cataagctcaaaaataagtcaatccaaacggg 7145207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 7537050 - 7537092
Alignment:
Q  2 ggttaagagagaggtagagacaaagtcaccgaactcaaagtca 44  Q
    ||||| ||||||| |||||||||||||||| ||||||||||||    
T  7537050 ggttaggagagagatagagacaaagtcaccaaactcaaagtca 7537092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 139
Target Start/End: Original strand, 26946193 - 26946223
Alignment:
Q  109 ttgcataagctcaaaaataagtcaatccaaa 139  Q
    |||||||||||||||||||||||||||||||    
T  26946193 ttgcataagctcaaaaataagtcaatccaaa 26946223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 147
Target Start/End: Complemental strand, 26988155 - 26988117
Alignment:
Q  109 ttgcataagctcaaaaataagtcaatccaaacgggtcct 147  Q
    |||||||||||||||||||| |||||||||||| |||||    
T  26988155 ttgcataagctcaaaaataattcaatccaaacgtgtcct 26988117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 142
Target Start/End: Complemental strand, 16225507 - 16225474
Alignment:
Q  109 ttgcataagctcaaaaataagtcaatccaaacgg 142  Q
    |||||||||||| |||||||||||||||||||||    
T  16225507 ttgcataagctctaaaataagtcaatccaaacgg 16225474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 48819317 - 48819272
Alignment:
Q  103 atttacttgcataagctcaaaaataagtcaatccaaacgggtccta 148  Q
    ||||| ||||||||||||||||||||| ||||||||| ||| ||||    
T  48819317 atttatttgcataagctcaaaaataagccaatccaaatgggcccta 48819272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 140
Target Start/End: Complemental strand, 994650 - 994622
Alignment:
Q  112 cataagctcaaaaataagtcaatccaaac 140  Q
    |||||||||||||||||||||||||||||    
T  994650 cataagctcaaaaataagtcaatccaaac 994622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 140
Target Start/End: Complemental strand, 26946042 - 26946014
Alignment:
Q  112 cataagctcaaaaataagtcaatccaaac 140  Q
    |||||||||||||||||||||||||||||    
T  26946042 cataagctcaaaaataagtcaatccaaac 26946014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 140
Target Start/End: Original strand, 26988296 - 26988324
Alignment:
Q  112 cataagctcaaaaataagtcaatccaaac 140  Q
    |||||||||||||||||||||||||||||    
T  26988296 cataagctcaaaaataagtcaatccaaac 26988324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 37431186 - 37431146
Alignment:
Q  101 ttatttacttgcataagctcaaaaataagtcaatccaaacg 141  Q
    ||||||| ||||| ||||||||||||||| |||||||||||    
T  37431186 ttatttatttgcacaagctcaaaaataagccaatccaaacg 37431146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 49315807 - 49315839
Alignment:
Q  8 gagagaggtagagacaaagtcaccgaactcaaa 40  Q
    ||||||| |||||||||||||||||||||||||    
T  49315807 gagagagatagagacaaagtcaccgaactcaaa 49315839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 92 - 143
Target Start/End: Complemental strand, 9140703 - 9140651
Alignment:
Q  92 acataaaa-tttatttacttgcataagctcaaaaataagtcaatccaaacggg 143  Q
    |||||||| ||||||||  ||||||||||||||||||||||||||||||||||    
T  9140703 acataaaagtttatttatatgcataagctcaaaaataagtcaatccaaacggg 9140651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 38216021 - 38215987
Alignment:
Q  109 ttgcataagctcaaaaataagtcaatccaaacggg 143  Q
    |||||||||||||||||||||||||||||||||||    
T  38216021 ttgcataagctcaaaaataagtcaatccaaacggg 38215987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 17317199 - 17317158
Alignment:
Q  101 ttatttacttgcataagctcaaaaataagtcaatccaaacgg 142  Q
    ||||||| || |||||||||||||||||||||||||||||||    
T  17317199 ttatttatttacataagctcaaaaataagtcaatccaaacgg 17317158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 18276949 - 18276909
Alignment:
Q  103 atttacttgcataagctcaaaaataagtcaatccaaacggg 143  Q
    ||||| |||||||||||||||||||||||||||||| ||||    
T  18276949 atttatttgcataagctcaaaaataagtcaatccaagcggg 18276909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 29774897 - 29774929
Alignment:
Q  116 agctcaaaaataagtcaatccaaacgggtccta 148  Q
    |||||||||||||||||||||||||||||||||    
T  29774897 agctcaaaaataagtcaatccaaacgggtccta 29774929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 37419950 - 37419899
Alignment:
Q  89 aatacataaaat-ttatttacttgcataagctcaaaaataagtcaatccaaa 139  Q
    |||||||||||  ||||||| |||||||||||||||| ||||||||||||||    
T  37419950 aatacataaaagcttatttatttgcataagctcaaaattaagtcaatccaaa 37419899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 35997324 - 35997287
Alignment:
Q  96 aaaatttatttacttgcataagctcaaaaataagtcaa 133  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  35997324 aaaacttatttatttgcataagctcaaaaataagtcaa 35997287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 141
Target Start/End: Original strand, 12223981 - 12224013
Alignment:
Q  109 ttgcataagctcaaaaataagtcaatccaaacg 141  Q
    ||||||||||||||||||||| |||||||||||    
T  12223981 ttgcataagctcaaaaataagccaatccaaacg 12224013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 87 - 142
Target Start/End: Original strand, 48823 - 48878
Alignment:
Q  87 ataatacataaaatttatttacttgcataagctcaaaaataagtcaatccaaacgg 142  Q
    ||||||||||||| ||||| | ||| |||||||| |||||||||||||||||||||    
T  48823 ataatacataaaagttattaatttgtataagctcgaaaataagtcaatccaaacgg 48878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 148
Target Start/End: Complemental strand, 32131438 - 32131399
Alignment:
Q  109 ttgcataagctcaaaaataagtcaatccaaacgggtccta 148  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  32131438 ttgcataagctcaaaaataagtcaatccaaatgggtccta 32131399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 34286614 - 34286668
Alignment:
Q  87 ataatacataaaat-ttatttacttgcataagctcaaaaataagtcaatccaaac 140  Q
    |||||||||||||  ||||||| || |||||||||||||||||||||||||||||    
T  34286614 ataatacataaaagcttatttatttacataagctcaaaaataagtcaatccaaac 34286668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 9130990 - 9130937
Alignment:
Q  92 acataaaa-tttatttacttgcataagctcaaaaataagtcaatccaaacgggt 144  Q
    |||||||| |||||||| ||||||||||||||||  ||||||||||||||||||    
T  9130990 acataaaagtttatttatttgcataagctcaaaatcaagtcaatccaaacgggt 9130937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 28879093 - 28879036
Alignment:
Q  87 ataatacataaaat-ttatttacttgcataagctcaaaaataagtcaatccaaacggg 143  Q
    |||||||||||||  ||||||| ||||||||||||||||||||| |||| ||||||||    
T  28879093 ataatacataaaagcttatttatttgcataagctcaaaaataagccaattcaaacggg 28879036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 140
Target Start/End: Complemental strand, 9781235 - 9781196
Alignment:
Q  101 ttatttacttgcataagctcaaaaataagtcaatccaaac 140  Q
    ||||||| |||||||||||| |||||||||||||||||||    
T  9781235 ttatttatttgcataagctctaaaataagtcaatccaaac 9781196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 143
Target Start/End: Original strand, 11460796 - 11460827
Alignment:
Q  112 cataagctcaaaaataagtcaatccaaacggg 143  Q
    ||||||||||||||||||||||||||||||||    
T  11460796 cataagctcaaaaataagtcaatccaaacggg 11460827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 104 - 143
Target Start/End: Complemental strand, 18396953 - 18396914
Alignment:
Q  104 tttacttgcataagctcaaaaataagtcaatccaaacggg 143  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  18396953 tttatttgcataagctcaaaaataagccaatccaaacggg 18396914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 142
Target Start/End: Original strand, 2019737 - 2019770
Alignment:
Q  109 ttgcataagctcaaaaataagtcaatccaaacgg 142  Q
    |||||||||||| |||||||||||||||||||||    
T  2019737 ttgcataagctctaaaataagtcaatccaaacgg 2019770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 32213073 - 32213122
Alignment:
Q  87 ataatacataaaat-ttatttacttgcataagctcaaaaataagtcaatc 135  Q
    |||||||||||||  ||||||| ||||||||||| |||||||||||||||    
T  32213073 ataatacataaaagcttatttatttgcataagcttaaaaataagtcaatc 32213122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 140
Target Start/End: Original strand, 11460851 - 11460879
Alignment:
Q  112 cataagctcaaaaataagtcaatccaaac 140  Q
    |||||||||||||||||||||||||||||    
T  11460851 cataagctcaaaaataagtcaatccaaac 11460879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 19925477 - 19925509
Alignment:
Q  110 tgcataagctcaaaaataagtcaatccaaacgg 142  Q
    ||||||||||| |||||||||||||||||||||    
T  19925477 tgcataagctctaaaataagtcaatccaaacgg 19925509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 35168399 - 35168359
Alignment:
Q  103 atttacttgcataagctcaaaaataagtcaatccaaacggg 143  Q
    ||||| || |||||||||||||||||| |||||||||||||    
T  35168399 atttatttacataagctcaaaaataagccaatccaaacggg 35168359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 140
Target Start/End: Complemental strand, 47511078 - 47511024
Alignment:
Q  87 ataatacataaaat-ttatttacttgcataagctcaaaaataagtcaatccaaac 140  Q
    |||||||||||||  ||||||| ||||||||||||||||||||| ||||||||||    
T  47511078 ataatacataaaagcttatttatttgcataagctcaaaaataagccaatccaaac 47511024  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 29378680 - 29378619
Alignment:
Q  87 ataatacataaaat-ttatttacttgcataagctcaaaaataagtcaatccaaacgggtcct 147  Q
    |||||||||||||  ||||||| ||||||||||||||| ||||| |||||||||| ||||||    
T  29378680 ataatacataaaagcttatttatttgcataagctcaaagataagccaatccaaacaggtcct 29378619  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 30181548 - 30181516
Alignment:
Q  109 ttgcataagctcaaaaataagtcaatccaaacg 141  Q
    |||||||||||||||||||||||||||||||||    
T  30181548 ttgcataagctcaaaaataagtcaatccaaacg 30181516  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 139
Target Start/End: Complemental strand, 29778476 - 29778433
Alignment:
Q  96 aaaatttatttacttgcataagctcaaaaataagtcaatccaaa 139  Q
    |||||||||||| ||||||||||| |||||||||||||| ||||    
T  29778476 aaaatttatttatttgcataagctaaaaaataagtcaattcaaa 29778433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 140
Target Start/End: Complemental strand, 38372556 - 38372525
Alignment:
Q  109 ttgcataagctcaaaaataagtcaatccaaac 140  Q
    ||||||||||||||||||||||||||||||||    
T  38372556 ttgcataagctcaaaaataagtcaatccaaac 38372525  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 147
Target Start/End: Original strand, 22515595 - 22515633
Alignment:
Q  109 ttgcataagctcaaaaataagtcaatccaaacgggtcct 147  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  22515595 ttgcataagctcaaatataagtcaatccaaatgggtcct 22515633  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 14691350 - 14691409
Alignment:
Q  87 ataatacataaaa--tttatttacttgcataagctcaaaaataagtcaatccaaacgggtc 145  Q
    |||||||||||||  |||||||| ||||| ||| ||||||| |||||||||||||||||||    
T  14691350 ataatacataaaagctttatttatttgca-aagttcaaaaacaagtcaatccaaacgggtc 14691409  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 33288150 - 33288199
Alignment:
Q  87 ataatacataaaat-ttatttacttgcataagctcaaaaataagtcaatc 135  Q
    |||||||||||||  ||||||| ||||||||||||||||||| |||||||    
T  33288150 ataatacataaaagcttatttatttgcataagctcaaaaatatgtcaatc 33288199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 1054006 - 1053974
Alignment:
Q  112 cataagctcaaaaataagtcaatccaaacgggt 144  Q
    |||| ||||||||||||||||||||||||||||    
T  1054006 catatgctcaaaaataagtcaatccaaacgggt 1053974  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 142
Target Start/End: Original strand, 1054119 - 1054175
Alignment:
Q  87 ataatacataaaat-ttatttacttgcataagctcaaaaataagtcaatccaaacgg 142  Q
    |||||||||||||  ||||||| |||||||||||||||| ||||| ||| |||||||    
T  1054119 ataatacataaaagcttatttatttgcataagctcaaaactaagtgaatacaaacgg 1054175  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 140
Target Start/End: Complemental strand, 23119878 - 23119850
Alignment:
Q  112 cataagctcaaaaataagtcaatccaaac 140  Q
    |||||||||||||||||||||||||||||    
T  23119878 cataagctcaaaaataagtcaatccaaac 23119850  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 140
Target Start/End: Complemental strand, 29390489 - 29390461
Alignment:
Q  112 cataagctcaaaaataagtcaatccaaac 140  Q
    |||||||||||||||||||||||||||||    
T  29390489 cataagctcaaaaataagtcaatccaaac 29390461  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 2034280 - 2034337
Alignment:
Q  87 ataatacataaaat-ttatttacttgcataagctcaaaaataagtcaatccaaacggg 143  Q
    |||||||||||||  ||||||| ||||||||||||||||| ||| |||||||||||||    
T  2034280 ataatacataaaagcttatttatttgcataagctcaaaaacaagccaatccaaacggg 2034337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 11795558 - 11795524
Alignment:
Q  109 ttgcataagctcaaaaataagtcaatccaaacggg 143  Q
    ||||||||||||| |||||||||||||||||||||    
T  11795558 ttgcataagctcagaaataagtcaatccaaacggg 11795524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 21025278 - 21025335
Alignment:
Q  87 ataatacataaaat-ttatttacttgcataagctcaaaaataagtcaatccaaacggg 143  Q
    |||||||||||||  ||||||| ||||||||||| |||||| || |||||||||||||    
T  21025278 ataatacataaaagcttatttatttgcataagctaaaaaattagccaatccaaacggg 21025335  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 140
Target Start/End: Original strand, 25430854 - 25430882
Alignment:
Q  112 cataagctcaaaaataagtcaatccaaac 140  Q
    |||||||||||||||||||||||||||||    
T  25430854 cataagctcaaaaataagtcaatccaaac 25430882  T

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Target: scaffold0071 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 108 - 143
Target Start/End: Complemental strand, 18136 - 18101
Alignment:
Q  108 cttgcataagctcaaaaataagtcaatccaaacggg 143  Q
    ||||||||||||||||||||||||||||||| ||||    
T  18136 cttgcataagctcaaaaataagtcaatccaatcggg 18101  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 108 - 143
Target Start/End: Original strand, 15444055 - 15444090
Alignment:
Q  108 cttgcataagctcaaaaataagtcaatccaaacggg 143  Q
    ||||||||||||||||||||||||||||||| ||||    
T  15444055 cttgcataagctcaaaaataagtcaatccaatcggg 15444090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 140
Target Start/End: Complemental strand, 29270359 - 29270328
Alignment:
Q  109 ttgcataagctcaaaaataagtcaatccaaac 140  Q
    ||||||||||||||||||||||||||||||||    
T  29270359 ttgcataagctcaaaaataagtcaatccaaac 29270328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 140
Target Start/End: Original strand, 34707801 - 34707832
Alignment:
Q  109 ttgcataagctcaaaaataagtcaatccaaac 140  Q
    ||||||||||||||||||||||||||||||||    
T  34707801 ttgcataagctcaaaaataagtcaatccaaac 34707832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 100 - 139
Target Start/End: Original strand, 37601092 - 37601131
Alignment:
Q  100 tttatttacttgcataagctcaaaaataagtcaatccaaa 139  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  37601092 tttatttatttgcataagctctaaaataagtcaatccaaa 37601131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 45331346 - 45331404
Alignment:
Q  87 ataatacataaaat-ttatttacttgcataagctcaaaaataagtcaatccaaacgggt 144  Q
    |||||||||||||  ||||||| || |||||||| ||||||||| ||||||||||||||    
T  45331346 ataatacataaaaggttatttatttacataagctaaaaaataagccaatccaaacgggt 45331404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 130
Target Start/End: Complemental strand, 52421104 - 52421070
Alignment:
Q  96 aaaatttatttacttgcataagctcaaaaataagt 130  Q
    |||||||||||| ||||||||||||||||||||||    
T  52421104 aaaatttatttatttgcataagctcaaaaataagt 52421070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 35480447 - 35480488
Alignment:
Q  100 tttatttacttgcataagctcaaaaataagtcaatccaaacg 141  Q
    ||||||||  |||||||||| |||||||||||||||||||||    
T  35480447 tttatttatctgcataagctaaaaaataagtcaatccaaacg 35480488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 10272120 - 10272088
Alignment:
Q  109 ttgcataagctcaaaaataagtcaatccaaacg 141  Q
    ||||||||||| |||||||||||||||||||||    
T  10272120 ttgcataagctaaaaaataagtcaatccaaacg 10272088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 140
Target Start/End: Complemental strand, 35480340 - 35480312
Alignment:
Q  112 cataagctcaaaaataagtcaatccaaac 140  Q
    |||||||||||||||||||||||||||||    
T  35480340 cataagctcaaaaataagtcaatccaaac 35480312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 89313 - 89362
Alignment:
Q  95 taaaatttatttacttgcataagctcaaaaataagtcaatccaaacgggt 144  Q
    ||||| || |||| ||||||||||| ||||||||||||||||||| ||||    
T  89313 taaaacttttttatttgcataagcttaaaaataagtcaatccaaatgggt 89362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 97147 - 97115
Alignment:
Q  109 ttgcataagctcaaaaataagtcaatccaaacg 141  Q
    ||||| |||||||||||||||||||||||||||    
T  97147 ttgcaaaagctcaaaaataagtcaatccaaacg 97115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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