View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3631_high_1 (Length: 623)

Name: NF3631_high_1
Description: NF3631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3631_high_1
NF3631_high_1
[»] chr4 (2 HSPs)
chr4 (34-357)||(53998074-53998405)
chr4 (360-535)||(9816870-9817046)
[»] chr5 (1 HSPs)
chr5 (54-357)||(25700669-25700979)
[»] chr1 (3 HSPs)
chr1 (235-359)||(13088132-13088257)
chr1 (414-495)||(18493887-18493968)
chr1 (360-497)||(18495682-18495819)
[»] chr3 (2 HSPs)
chr3 (38-201)||(55494499-55494674)
chr3 (360-476)||(8518909-8519025)
[»] chr8 (2 HSPs)
chr8 (359-500)||(19365713-19365854)
chr8 (360-477)||(11694519-11694636)
[»] scaffold0357 (1 HSPs)
scaffold0357 (463-517)||(54-108)
[»] scaffold0058 (1 HSPs)
scaffold0058 (463-517)||(74785-74839)
[»] scaffold0566 (1 HSPs)
scaffold0566 (393-497)||(8049-8153)
[»] scaffold0106 (1 HSPs)
scaffold0106 (385-497)||(23695-23807)
[»] chr2 (1 HSPs)
chr2 (360-476)||(24953797-24953913)
[»] scaffold0624 (1 HSPs)
scaffold0624 (393-500)||(2050-2157)
[»] chr6 (1 HSPs)
chr6 (382-479)||(7387329-7387426)


Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 34 - 357
Target Start/End: Complemental strand, 53998405 - 53998074
Alignment:
Q  34 atcccgtagatgcaagcatgaaaaaggaattgtgagcggcgaccagttagcaagaagactatttagggttttctatagtccacttttcttttcag----- 128  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||         
T  53998405 atcccgtagatgcaagcatgaaaaaggaactgtgagcggcggccagttagcaagaagactatttagggttttctatagtccactttgcttttcagtatct 53998306  T
Q  129 -gcccatttcttttttaccaaaatgtggcccatgtgctatgtctatttgtgtttcttttaaccgaagaaaacaaaacaatgtatgttttannnnnnnnn- 226  Q
     ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||               
T  53998305 ggcccatttcttttttaccaaaatgtggcccacgtgttatgtctatttgtgtttcttttaaccgaagaaaacaaaacaatgtattttttttttttttttt 53998206  T
Q  227 acctaaaacaacgcttcatgatgttgttgtgggggctttggaacaatagaaacgatatgatttggaaccaaaagcatttaagtgcacatgatatatgctt 326  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53998205 acctaaaacaacgcttcatgatgctgttgtgggggctttggaacaatagaaacgatatgatttggaaccaaaagcatttaagtgcacatgatatatgctt 53998106  T
Q  327 gaatgttaaccggttttgg-aggagtggtatg 357  Q
    |||||||||| |||||||| ||||||||||||    
T  53998105 gaatgttaactggttttggtaggagtggtatg 53998074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 535
Target Start/End: Original strand, 9816870 - 9817046
Alignment:
Q  360 cactacaccatttatcctttccagcaacatttaaaaaccgttgccagaacttctaaaatcgttgcctaatggaataggggacgattttcagaagtcccct 459  Q
    ||||||||||||||||||||  | ||||| |  ||||  ||||||||||||    ||| |||  ||||| || |||||||||| ||||| |  ||| |||    
T  9816870 cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactaaggaaaacgtcccctaaaggtataggggacgtttttcgggcgtctcct 9816969  T
Q  460 atacgagcgttgcctattgttttaggggacga-ttttcttgctctatgagcacacttttttcaatcgttgcctaaac 535  Q
    |||||||||| |||||| || || |||||||| ||||| || ||| |||||||| |||||  || ||| ||||||||    
T  9816970 atacgagcgtcgcctatagtctttggggacgatttttcatgttctttgagcacagtttttgaaaacgtcgcctaaac 9817046  T

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Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 54 - 357
Target Start/End: Complemental strand, 25700979 - 25700669
Alignment:
Q  54 aaaaaggaattgtgagcggcgaccagttagcaagaagactatttagggttttctatagtccacttttcttttca------ggcccatttcttttttacca 147  Q
    ||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||      ||||||||||||||||||||    
T  25700979 aaaaaggaagtgtgagcggtggccagttagcaagaagactatttagggttttctatagtccactttgcttttcaatatctggcccatttcttttttacca 25700880  T
Q  148 aaatgtggcccatgtgctatgtctatttgtgtttcttttaaccgaagaaaacaaaacaatgtatgttttannnnnnnnnacctaaaacaacgcttcatga 247  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||           | ||||||||||||||||||    
T  25700879 aaatgtggcccacgtgttatgtctatttgtgtttcttttaaccgaagaaaacaaaacaatgtatttttttttttttttaccttaaaacaacgcttcatga 25700780  T
Q  248 tgttgttgtgggggctttggaacaatagaaacgatatgatttggaaccaaaagcatttaagtgcacatgatatatgcttgaatgttaaccggttttgg-a 346  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  25700779 tgctgttgtgggggctttggaacaatagaaacgatatgatttggaaccaaaagcatttaagtgcacatgatatatgcttgaatgttaaccggttttggta 25700680  T
Q  347 ggagtggtatg 357  Q
    |||||||||||    
T  25700679 ggagtggtatg 25700669  T

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Target: chr1 (Bit Score: 86; Significance: 8e-41; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 235 - 359
Target Start/End: Original strand, 13088132 - 13088257
Alignment:
Q  235 caacgcttcatgatgttgttgtgggggctttggaacaatagaaacgatatgatttggaaccaaaagcatttaagtgcacatgatatatgcttgaatgtta 334  Q
    ||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||    
T  13088132 caacgcttcatgatgctgttgtgaggactttggaacaatagaaacgatatgatttggaaccaaaaacatttagttgcacatgatatatgcttgaatgtta 13088231  T
Q  335 accggttttgg-aggagtggtatgcg 359  Q
    || |||||||| || |||||||||||    
T  13088232 actggttttggcagaagtggtatgcg 13088257  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 414 - 495
Target Start/End: Original strand, 18493887 - 18493968
Alignment:
Q  414 aaaatcgttgcctaatggaataggggacgattttcagaagtcccctatacgagcgttgcctattgttttaggggacgatttt 495  Q
    |||||||||||||||  |||||||||||| |||||||| ||| ||||||||||||| ||||| |||||  || |||||||||    
T  18493887 aaaatcgttgcctaagagaataggggacgcttttcagacgtctcctatacgagcgtcgcctaatgtttagggcgacgatttt 18493968  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 360 - 497
Target Start/End: Original strand, 18495682 - 18495819
Alignment:
Q  360 cactacaccatttatcctttccagcaacatttaaaaaccgttgccagaacttctaaaatcgttgcctaatggaataggggacgattttcagaagtcccct 459  Q
    ||||||||||||||||||||  | ||||| |  ||||  ||||||||||||   |||| |||  ||||| || |||||||||| ||||| || ||| |||    
T  18495682 cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacgtcccctaaaggtataggggacgtttttcggacgtctcct 18495781  T
Q  460 atacgagcgttgcctattgttttaggggacgattttct 497  Q
    |||||||||| |||||| || |  ||||||| ||||||    
T  18495782 atacgagcgtcgcctatagtctatggggacgtttttct 18495819  T

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Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 38 - 201
Target Start/End: Original strand, 55494499 - 55494674
Alignment:
Q  38 cgtagatgcaagcatgaaaaaggaattgtgagcggcgaccagttagcaagaagactatttagggttttctatagtccacttt--tcttttca------gg 129  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||   |||||||      ||    
T  55494499 cgtagatgcaagcatgaaaaaggaagtgtgagcggcggccagttaacaagaagactatttagggttttctataatccactttgggcttttcactatgtgg 55494598  T
Q  130 cccatttcttttttaccaaaatgtggcccatgtgctatgtctatttgtgtttct----tttaaccgaagaaaacaa 201  Q
    |  |||||||||||||||||| ||||||||  || |||||||| ||||||||||    ||||||||||||||||||    
T  55494599 catatttcttttttaccaaaaggtggcccacatgttatgtctagttgtgtttcttttatttaaccgaagaaaacaa 55494674  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 476
Target Start/End: Original strand, 8518909 - 8519025
Alignment:
Q  360 cactacaccatttatcctttccagcaacatttaaaaaccgttgccagaacttctaaaatcgttgcctaatggaataggggacgattttcagaagtcccct 459  Q
    ||||||||||||||||||||  | ||||| |  ||||  ||||||||||||   |||| |||  ||||| || |||||||||| ||| | || ||| |||    
T  8518909 cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacgtcccctaaaggtataggggacgttttccggacgtctcct 8519008  T
Q  460 atacgagcgttgcctat 476  Q
    |||||||||| ||||||    
T  8519009 atacgagcgtcgcctat 8519025  T

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Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 359 - 500
Target Start/End: Original strand, 19365713 - 19365854
Alignment:
Q  359 gcactacaccatttatcctttccagcaacatttaaaaaccgttgccagaacttctaaaatcgttgcctaatggaataggggacgattttcagaagtcccc 458  Q
    |||| |||||||||||||| ||||| |||| || |||| |||||||||||||||||||| |||||||||||||  ||||||||| |||||||  ||| ||    
T  19365713 gcacgacaccatttatcctctccaggaacaattcaaaatcgttgccagaacttctaaaagcgttgcctaatggtttaggggacgtttttcaggtgtctcc 19365812  T
Q  459 tatacgagcgttgcctattgttttaggggacgattttcttgc 500  Q
    |||  |||||| ||| ||||| | |||||||| |||| ||||    
T  19365813 tatgtgagcgtcgccaattgtctaaggggacgctttttttgc 19365854  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 477
Target Start/End: Complemental strand, 11694636 - 11694519
Alignment:
Q  360 cactacaccatttatcctttccagcaacatttaaaaaccgttgccagaacttctaaaatcgttgcctaatggaataggggacgattttcagaagtcccct 459  Q
    ||||||| ||||||||||||  ||||||| || |||| ||||||| |||||   ||||||||  |||||  |||||||  ||| |||||||  ||| |||    
T  11694636 cactacagcatttatcctttatagcaacagttgaaaaacgttgcccgaactatgaaaatcgtcccctaagagaataggaaacgcttttcaggcgtctcct 11694537  T
Q  460 atacgagcgttgcctatt 477  Q
    || ||||||| |||||||    
T  11694536 atgcgagcgtcgcctatt 11694519  T

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Target: scaffold0357 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0357
Description:

Target: scaffold0357; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 463 - 517
Target Start/End: Original strand, 54 - 108
Alignment:
Q  463 cgagcgttgcctattgttttaggggacgattttcttgctctatgagcacactttt 517  Q
    ||||||| |||||||||||||||||||||||||||  |||| || ||||||||||    
T  54 cgagcgtcgcctattgttttaggggacgattttctcactctttgggcacactttt 108  T

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Target: scaffold0058 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 463 - 517
Target Start/End: Original strand, 74785 - 74839
Alignment:
Q  463 cgagcgttgcctattgttttaggggacgattttcttgctctatgagcacactttt 517  Q
    ||||||| |||||||||||||||||||||||||||  |||| || ||||||||||    
T  74785 cgagcgtcgcctattgttttaggggacgattttctcactctttgggcacactttt 74839  T

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Target: scaffold0566 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0566
Description:

Target: scaffold0566; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 393 - 497
Target Start/End: Complemental strand, 8153 - 8049
Alignment:
Q  393 aaaaccgttgccagaacttctaaaatcgttgcctaatggaataggggacgattttcagaagtcccctatacgagcgttgcctattgttttaggggacgat 492  Q
    |||| |||||||||||||   |||||||||||| ||   ||||||||||| |||||||  |||  |||||||||||| |||||| || | |||||||| |    
T  8153 aaaaacgttgccagaactatgaaaatcgttgccaaagacaataggggacgtttttcaggcgtcttctatacgagcgtcgcctatagtctaaggggacgct 8054  T
Q  493 tttct 497  Q
    |||||    
T  8053 tttct 8049  T

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Target: scaffold0106 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 385 - 497
Target Start/End: Original strand, 23695 - 23807
Alignment:
Q  385 aacatttaaaaaccgttgccagaacttctaaaatcgttgcctaatggaataggggacgattttcagaagtcccctatacgagcgttgcctattgttttag 484  Q
    ||||||| |||| |||||||||||||   |||||||||||| ||   ||||||||||| |||||||  | |  |||||||||| |||||||| || | ||    
T  23695 aacatttgaaaagcgttgccagaactatgaaaatcgttgccaaagacaataggggacgtttttcaggcgacttctatacgagcattgcctatagtctaag 23794  T
Q  485 gggacgattttct 497  Q
    |||||| ||||||    
T  23795 gggacgcttttct 23807  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 476
Target Start/End: Complemental strand, 24953913 - 24953797
Alignment:
Q  360 cactacaccatttatcctttccagcaacatttaaaaaccgttgccagaacttctaaaatcgttgcctaatggaataggggacgattttcagaagtcccct 459  Q
    ||||||||||||||||||||  | ||||| |  ||||  ||||||||||||   |||| |||  ||||| || ||| |||||| |||||||  ||| |||    
T  24953913 cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacgtcccctaaaggtatatgggacgtttttcaggcgtctcct 24953814  T
Q  460 atacgagcgttgcctat 476  Q
    |||||||||||||||||    
T  24953813 atacgagcgttgcctat 24953797  T

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Target: scaffold0624 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0624
Description:

Target: scaffold0624; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 500
Target Start/End: Complemental strand, 2157 - 2050
Alignment:
Q  393 aaaaccgttgccagaacttctaaaatcgttgcctaatggaataggggacgattttcagaagtcccctatacgagcgttgcctattgttttaggggacgat 492  Q
    |||| |||||||||||||   ||||| |||||| ||  ||||||||||||||||| ||  |||  |||||||||||| |||||| || | |||| ||| |    
T  2157 aaaatcgttgccagaactatgaaaattgttgccaaagagaataggggacgattttgaggcgtcttctatacgagcgtcgcctatagtctaagggcacgtt 2058  T
Q  493 tttcttgc 500  Q
    ||||||||    
T  2057 tttcttgc 2050  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 479
Target Start/End: Complemental strand, 7387426 - 7387329
Alignment:
Q  382 agcaacatttaaaaaccgttgccagaacttctaaaatcgttgcctaatggaataggggacgattttcagaagtcccctatacgagcgttgcctattgt 479  Q
    ||||||| || ||||  ||||||||||||   |||| ||||||||||  ||||||| || |||||||||  ||| |||||  ||||||||||||||||    
T  7387426 agcaacagttgaaaattgttgccagaactgtgaaaaacgttgcctaaaagaataggcgatgattttcaggcgtctcctatgtgagcgttgcctattgt 7387329  T

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