View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3631_high_10 (Length: 321)
Name: NF3631_high_10
Description: NF3631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3631_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 102 - 298
Target Start/End: Complemental strand, 7653351 - 7653155
Alignment:
| Q |
102 |
agaagtgttgtgtatgagagcgtcttacaaatcggactactttagatattggtggttaaattggtagtttacattctttttatctctcctaatgtacacc |
201 |
Q |
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| T |
7653351 |
agaagtgttgtgtatgagagcgtcttacaattcggactactttagaaattggtggttaaattggtagtttacattatttttatctctcctaatgtacacc |
7653252 |
T |
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| Q |
202 |
ttgagtatgaaatccatagttctaacaccataataagtgctatagtaatagatgctctaaaatccaatccatacaaagtacgccaacctttgcgcag |
298 |
Q |
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| T |
7653251 |
ttgagtatgaaatccatagttctaacaccataataagtgctatagtaatagatgctctaaaatccaatccatacaaagtacgccaacctttgcgcag |
7653155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 7653795 - 7653708
Alignment:
| Q |
8 |
ggtagatagacgaaatgaaaaaattattataaactttcacagataagtagtggtattgaagttggaaccccaattataatatcggcat |
95 |
Q |
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| T |
7653795 |
ggtagatagacgaaatgaaaaaattattataaactctcacacataagtagaggtattggagttggaaccccgattataatatcggcat |
7653708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 41897951 - 41897906
Alignment:
| Q |
10 |
tagatagacgaaatgaaaaaattattataaactttcacagataagt |
55 |
Q |
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| T |
41897951 |
tagatagacgaaatgacaaaattattataaactcacacacataagt |
41897906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 36136861 - 36136895
Alignment:
| Q |
8 |
ggtagatagacgaaatgaaaaaattattataaact |
42 |
Q |
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| T |
36136861 |
ggtagatagacgaaatgacaaaattattataaact |
36136895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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