View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3631_high_12 (Length: 305)

Name: NF3631_high_12
Description: NF3631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3631_high_12
NF3631_high_12
[»] chr6 (6 HSPs)
chr6 (13-289)||(10750164-10750439)
chr6 (130-208)||(10754597-10754675)
chr6 (130-201)||(18613088-18613159)
chr6 (128-254)||(10748682-10748807)
chr6 (130-201)||(992442-992513)
chr6 (144-203)||(32678632-32678691)
[»] chr3 (7 HSPs)
chr3 (130-203)||(31125751-31125824)
chr3 (130-201)||(38930471-38930542)
chr3 (130-201)||(53107639-53107710)
chr3 (130-207)||(47565677-47565754)
chr3 (130-201)||(34974803-34974874)
chr3 (130-201)||(53682982-53683053)
chr3 (155-191)||(32170504-32170540)
[»] chr1 (21 HSPs)
chr1 (130-207)||(22908318-22908395)
chr1 (130-201)||(39972786-39972857)
chr1 (130-203)||(48049405-48049478)
chr1 (130-202)||(29812825-29812897)
chr1 (130-202)||(48040172-48040244)
chr1 (130-202)||(48053126-48053198)
chr1 (130-202)||(48054678-48054750)
chr1 (130-201)||(48042225-48042296)
chr1 (130-203)||(48041322-48041395)
chr1 (129-202)||(48050608-48050681)
chr1 (130-202)||(5126503-5126575)
chr1 (130-202)||(48033102-48033174)
chr1 (130-202)||(48034710-48034782)
chr1 (130-202)||(48035757-48035829)
chr1 (130-202)||(48055942-48056014)
chr1 (130-202)||(48042834-48042906)
chr1 (130-198)||(48050016-48050084)
chr1 (129-202)||(48048641-48048715)
chr1 (147-202)||(29813666-29813721)
chr1 (130-197)||(48036725-48036792)
chr1 (132-191)||(48054322-48054381)
[»] chr2 (7 HSPs)
chr2 (130-206)||(6801054-6801130)
chr2 (130-202)||(35926125-35926197)
chr2 (130-201)||(39990580-39990651)
chr2 (130-204)||(35920134-35920208)
chr2 (130-205)||(6796493-6796568)
chr2 (130-205)||(7181560-7181635)
chr2 (130-201)||(13326996-13327067)
[»] chr7 (4 HSPs)
chr7 (130-201)||(23780469-23780540)
chr7 (130-201)||(43920607-43920678)
chr7 (130-201)||(40706106-40706177)
chr7 (139-196)||(46064797-46064854)
[»] chr4 (3 HSPs)
chr4 (130-201)||(38393563-38393634)
chr4 (130-202)||(49152535-49152607)
chr4 (139-196)||(26929298-26929355)


Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 289
Target Start/End: Original strand, 10750164 - 10750439
Alignment:
Q  13 gaacctgtgaagtattttttatcttcaaaaaatagaacaaatgaatatattagnnnnnnnnnctttccaaaaatagaacaaatgaagcattcattttgta 112  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||    
T  10750164 gaacccgtgaagtattttttatcttcaaaaaatagaacaaatgaatatattagtttttttt-ctttccaaaaatagaacaaatgaagcattcattttgta 10750262  T
Q  113 tgtaataaaaagggatgggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccctttttgacatt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10750263 tgtaataaaaagggatgggggcattccgagaattgaactcgggacctcttgcaccctaagcgagaatcataccactagatcaaatgccctttttgacatt 10750362  T
Q  213 tctcatcctcaacattaacccataaaagcattgattatattttgatgaatcaataaactatatacacctcacaaaac 289  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  10750363 tctcatcctcaacattaacccataaaagcattcattatattttgatgaatcgataaactatatacacctcacaaaac 10750439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 130 - 208
Target Start/End: Original strand, 10754597 - 10754675
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccctttttga 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10754597 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccctttttga 10754675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 18613159 - 18613088
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccc 201  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18613159 ggggcattccgagaattaaactcgggacctctcgcaccctaagcaagaatcataccactagatcaaatgccc 18613088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 128 - 254
Target Start/End: Original strand, 10748682 - 10748807
Alignment:
Q  128 tgggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccctttttgacatttctcatcctcaacat 227  Q
    ||||||||||||||||||||| |||| |||||||| |||||||| ||||||||||| ||||||| ||||||||||||   | ||||||||| ||||||||    
T  10748682 tgggggcattccgagaattgagctcgagacctctcacaccctaaacgagaatcatatcactagaccaaatgccctttacaatatttctcat-ctcaacat 10748780  T
Q  228 taacccataaaagcattgattatattt 254  Q
    |||  ||||||| |||| || ||||||    
T  10748781 taatacataaaaacattcataatattt 10748807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 992442 - 992513
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccc 201  Q
    ||||||||| |||||| |||||| ||||||||||||||| |||||||||||||||||||||| |||||||||    
T  992442 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 992513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 32678632 - 32678691
Alignment:
Q  144 attgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccctt 203  Q
    ||||||||| ||||||||| ||||| |||||||||||||||||||||| |||||||||||    
T  32678632 attgaactcaggacctctcacacccaaagcgagaatcataccactagaccaaatgccctt 32678691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 130 - 203
Target Start/End: Complemental strand, 31125824 - 31125751
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccctt 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31125824 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccctt 31125751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 38930471 - 38930542
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccc 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38930471 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 38930542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 53107710 - 53107639
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccc 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  53107710 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 53107639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 47565677 - 47565754
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccctttttg 207  Q
    ||||||||| |||||| |||||| ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||    
T  47565677 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctgtttg 47565754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 34974874 - 34974803
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccc 201  Q
    ||||||||| |||||| |||||| ||||||||||||||| |||||||||||||||||||||| |||||||||    
T  34974874 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 34974803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 53683053 - 53682982
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccc 201  Q
    ||||||||| |||||| |||||| ||||||||||||||| |||||||||||||||||||||| |||||||||    
T  53683053 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 53682982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 32170540 - 32170504
Alignment:
Q  155 gacctctcgcaccctaagcgagaatcataccactaga 191  Q
    |||||||||||||| |||| |||||||||||||||||    
T  32170540 gacctctcgcaccccaagctagaatcataccactaga 32170504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 22908395 - 22908318
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccctttttg 207  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  22908395 ggggcattccgagaattgaactcgagacctctcgcaccctaagcgagaatcataccactagaccaaatgccctttttg 22908318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 39972786 - 39972857
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccc 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39972786 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 39972857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 130 - 203
Target Start/End: Complemental strand, 48049478 - 48049405
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccctt 203  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  48049478 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctt 48049405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 29812825 - 29812897
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccct 202  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  29812825 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 29812897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 48040244 - 48040172
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccct 202  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  48040244 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 48040172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 48053198 - 48053126
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccct 202  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||    
T  48053198 ggggcattccgagaattgaactcgggacctctcgcacccaaagcgagaattataccactagaccaaatgccct 48053126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 48054750 - 48054678
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccct 202  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||| ||||||||||    
T  48054750 ggggcattccgagaattgaactcggaacctctcgcacccaaagcgagaatcatacctctagaccaaatgccct 48054678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 48042296 - 48042225
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccc 201  Q
    |||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||| |||||||||    
T  48042296 ggggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 48042225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 130 - 203
Target Start/End: Complemental strand, 48041395 - 48041322
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccctt 203  Q
    ||||||||| |||||| |||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  48041395 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctt 48041322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 48050681 - 48050608
Alignment:
Q  129 gggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccct 202  Q
    |||||||||| |||||| |||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  48050681 gggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 48050608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 5126575 - 5126503
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccct 202  Q
    ||||||||| |||||| |||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  5126575 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 5126503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 48033174 - 48033102
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccct 202  Q
    ||||||||| |||||| |||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  48033174 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 48033102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 48034782 - 48034710
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccct 202  Q
    ||||||||| |||||| |||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  48034782 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 48034710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 48035829 - 48035757
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccct 202  Q
    ||||||||| |||||| |||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  48035829 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 48035757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 48056014 - 48055942
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccct 202  Q
    ||||||||| |||||| |||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  48056014 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 48055942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 48042906 - 48042834
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccct 202  Q
    ||||||||| |||||| |||||| || |||||||||||| |||||||||||||||||||||| ||||||||||    
T  48042906 ggggcattcagagaatcgaactccgggcctctcgcacccaaagcgagaatcataccactagaccaaatgccct 48042834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 48050084 - 48050016
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatg 198  Q
    |||||||||||||||| |||||||| ||||||| ||||| |||||||||||||||||||||| ||||||    
T  48050084 ggggcattccgagaatcgaactcggaacctctcacacccaaagcgagaatcataccactagaccaaatg 48050016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 48048715 - 48048641
Alignment:
Q  129 gggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccacta-gatcaaatgccct 202  Q
    |||||||||||||||||  |||| |||||||||||||||| |||||||||| ||||||||| || ||||||||||    
T  48048715 gggggcattccgagaatcaaacttgggacctctcgcacccaaagcgagaatgataccactaggaccaaatgccct 48048641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 29813666 - 29813721
Alignment:
Q  147 gaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccct 202  Q
    |||||| ||||||||||||||| |||||||||||| ||||||||| ||||||||||    
T  29813666 gaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccct 29813721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 197
Target Start/End: Complemental strand, 48036792 - 48036725
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaat 197  Q
    ||||||||| ||||||  ||||| |||||||| |||||| |||||||||||||||||||||| |||||    
T  48036792 ggggcattcggagaatcaaactccggacctctggcacccaaagcgagaatcataccactagaccaaat 48036725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 48054381 - 48054322
Alignment:
Q  132 ggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactaga 191  Q
    ||||||| |||||| |||||| ||||||||||||||| |||||||||||||  |||||||    
T  48054381 ggcattctgagaatcgaactcaggacctctcgcacccaaagcgagaatcatttcactaga 48054322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 130 - 206
Target Start/End: Original strand, 6801054 - 6801130
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgcccttttt 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  6801054 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgcccatttt 6801130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 35926125 - 35926197
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccct 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35926125 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccct 35926197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 39990651 - 39990580
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccc 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39990651 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 39990580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 35920134 - 35920208
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgcccttt 204  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| || |||||||||    
T  35920134 ggggcattccgagaattgaacttgggacctctcgcaccctaagcaagaatcataccactagaccagatgcccttt 35920208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 6796568 - 6796493
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccctttt 205  Q
    ||||||||| |||||| |||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  6796568 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctttt 6796493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 7181635 - 7181560
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccctttt 205  Q
    ||||||||| |||||| |||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  7181635 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctttt 7181560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 13326996 - 13327067
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccc 201  Q
    ||||||||| |||||| |||||| ||||||||||||||| |||||||||||||||||||||| |||||||||    
T  13326996 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 13327067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 23780540 - 23780469
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccc 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  23780540 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 23780469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 43920678 - 43920607
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccc 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  43920678 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 43920607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 40706177 - 40706106
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccc 201  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||    
T  40706177 ggggcattccgagaattgaactcgggacctctcgcaccttaagcgagaatcatacaactagaccaaatgccc 40706106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 46064797 - 46064854
Alignment:
Q  139 cgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaa 196  Q
    ||||||| ||||||  |||||||||||||| |||||||||||||||||||||| ||||    
T  46064797 cgagaatcgaactcacgacctctcgcacccgaagcgagaatcataccactagaccaaa 46064854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 38393563 - 38393634
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccc 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38393563 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 38393634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 49152535 - 49152607
Alignment:
Q  130 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaatgccct 202  Q
    ||||||||| |||||| |||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  49152535 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 49152607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 26929298 - 26929355
Alignment:
Q  139 cgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagatcaaa 196  Q
    ||||||| ||||||  |||||||||||||| |||||||||||||||||||||| ||||    
T  26929298 cgagaatcgaactcacgacctctcgcacccgaagcgagaatcataccactagaccaaa 26929355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University