View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3631_high_4 (Length: 447)
Name: NF3631_high_4
Description: NF3631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3631_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 35508197 - 35508621
Alignment:
| Q |
1 |
atcaatatcgtgtttagatgtgtcagtgatccttagatagtgagatatataaagttagttatgtgcacgttttgatgaatgctggtaagctaagcatgtg |
100 |
Q |
| |
|
||||||||||||||||||||||| | | |||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35508197 |
atcaatatcgtgtttagatgtgttactaatccgtagatagtgatatatataaagttagttatgtgcacgttttggtgaatgctggtaagctaagcatgtg |
35508296 |
T |
|
| Q |
101 |
gacacatagattgcgtgaggtgtccgaatgcataagaaatattgggagagataagaagtgat-----cactcattgacattagcacatgtaggttgagaa |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35508297 |
gacacatagattgcgtgaggtgtccgaatgcataagaaatattgggagagataagaagtgatctgatcactcattgacattagcacatgtaggttgagaa |
35508396 |
T |
|
| Q |
196 |
gttccctccatgtcgtgtaacctcccattacgtattctactttatataattaatattctatataatattcttatcatactccaaaagtaacttaatcata |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35508397 |
gttccctccatgtcgtgtaacctcccattacgtattctactttatataattaatattctatataatattcttatcatactccaaaagtaacttaatcata |
35508496 |
T |
|
| Q |
296 |
atacaataccataataatgaattgttgctttgcttgcgttgttaggcctatcctaatttctggtcactcaactatctccatagtctagctgtacgtattt |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
35508497 |
atacaataccataataatgaattgttgctttgcttgcgttgttaggcctatcctaatttctggtcactcaactatctccatagtctatctgtacgtattt |
35508596 |
T |
|
| Q |
396 |
aattgaacattaatttcttctatta |
420 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
35508597 |
aattgaacattaatttcttctatta |
35508621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 20923176 - 20923088
Alignment:
| Q |
50 |
taaagttagttatgtgcacgttttgatg-aatgctggtaagctaagcatgtggacacatagattgcgtgaggtgtccgaatgcataaga |
137 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
20923176 |
taaagttagttatgtgcacgtttttttggaatgctggtaagctaagcatgtggacacatacattgcgtgaggtgtccgaatgtataaga |
20923088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University