View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3631_high_7 (Length: 388)
Name: NF3631_high_7
Description: NF3631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3631_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 333
Target Start/End: Complemental strand, 36440650 - 36440336
Alignment:
| Q |
19 |
gaactgtccatgaagaatcaagtcagatttctaacaaacagatttactaactatgtgcctctatctagagccacataagttccctaagaatttaatatca |
118 |
Q |
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| T |
36440650 |
gaactgtccatgaagaatcaagtcagatttctaacaaacagatttactaactatgtgcctctatctagagccacataagttccctaagaatttaatatca |
36440551 |
T |
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| Q |
119 |
tgcaactaccaaggtaccaatttttcaatttttagttgtatgtctcaatcacactcctttactcacaggacccatatataacaactcatgcatattcatc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36440550 |
tgcaactaccaaggtaccaatttttcaatttttagttgtatgtctcaatcgcactcctttactcacaggacccatatataacaactcatgcatattcatc |
36440451 |
T |
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| Q |
219 |
cccagatcagcacgcattctcatcattaatgataaaagtaactcaaattcaacttgttcatttctaatccttttcactcatcaaatgctattcataacac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36440450 |
cccagatcagcacgcattctcatcattaatgataaaagtaactcaaattcaacttgttcatttctaatccttttcactcatcaaatgctattcataacac |
36440351 |
T |
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| Q |
319 |
catgaaagaggttcc |
333 |
Q |
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||||||||||||||| |
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| T |
36440350 |
catgaaagaggttcc |
36440336 |
T |
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