View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3631_low_13 (Length: 296)
Name: NF3631_low_13
Description: NF3631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3631_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 46 - 285
Target Start/End: Complemental strand, 32603011 - 32602772
Alignment:
| Q |
46 |
catagcatcataatgatgtatgtattgttatgaggaaaatgaagactacagctattatattcaattcattcatctagtggacaaactgacggaagaacaa |
145 |
Q |
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| T |
32603011 |
catagcatcataatgatgtatgtattgttatgaggaaaatgaagactacagctattatattcaattcattcatctagtggacaaactgacggaagaacaa |
32602912 |
T |
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| Q |
146 |
aatatcatttccattttgaataacaatattaattgcatgttggccaatgtcagaaatcatcaaattgcttgcatggttggtcttatatataccactataa |
245 |
Q |
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| T |
32602911 |
aatatcatttccattttgaataacaatattaattgcatgttggccaatgtcagaaatcatcaaattgcttgcatggttggtcttatatataccactataa |
32602812 |
T |
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| Q |
246 |
agttatgcaatattcatcatccttcaatattcacaggttc |
285 |
Q |
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| T |
32602811 |
agttatgcaatattcatcatccttcattattcataggttc |
32602772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 94 - 179
Target Start/End: Complemental strand, 32592837 - 32592752
Alignment:
| Q |
94 |
cagctattatattcaattcattcatctagtggacaaactgacggaagaacaaaatatcatttccattttgaataacaatattaatt |
179 |
Q |
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| T |
32592837 |
cagctattatattcaatccattcatctagtggacaaactgacggaagaaactaatatcatttccattttgaataacaatattaatt |
32592752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 179 - 267
Target Start/End: Complemental strand, 32592720 - 32592635
Alignment:
| Q |
179 |
tgcatgttggccaatgtcagaaatcatcaaattgcttgcatggttggtcttatatataccactataaagttatgcaatattcatcatcc |
267 |
Q |
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| T |
32592720 |
tgcatgttggccgatatcagaaatcatcaaattgcttgcatggt---tcttatatataccactctaaggttatgcaatattcatcatcc |
32592635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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