View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3631_low_3 (Length: 507)
Name: NF3631_low_3
Description: NF3631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3631_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 11 - 488
Target Start/End: Original strand, 45289805 - 45290279
Alignment:
| Q |
11 |
cacagatatgacacagacacatcgacaacaataataatttgagaaaaatgatataattgaacgaaatcacatatgttggacacgtgggacacactttcaa |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||| |
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| T |
45289805 |
cacatatatgacacagacacatcgacaacaataataatttgagaaaaatgatataattgaatgtaatcacatattttggacacgtgggacacactttcaa |
45289904 |
T |
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| Q |
111 |
ttagaagcaactgacttgataataaagtttgacttttgagcaactatatgagtaaaaatgacttacaaagattgtgagaagaataacaagaatcaaaatt |
210 |
Q |
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| T |
45289905 |
tcagaagcaactgacttgataataaagtttgacttttgagcaactatatgaataaaaatgacttacaaagattgtgagaagaataacaagaatcaaaatt |
45290004 |
T |
|
| Q |
211 |
gaatatccagagtgattggggaaatcatcaaagaattttctagctacaaaagcacagaaaacagcaacaggagcaatcacaagaaagagcgttgtaaata |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45290005 |
gaatatccagagtgattggggaaatcatcaaagaattttctagctacaaaagcacagaaaacagcaacaggagcaatcacaagaaagagcgttgtaaata |
45290104 |
T |
|
| Q |
311 |
tagatttcacatcaggtccaaatataaacctccctccaagaaaaaacacctgnnnnnnnnnnnnnngtagtattagtaatgataattaaacaatagaaaa |
410 |
Q |
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| T |
45290105 |
tagatttcacatcaggtccaaatataaacctccctccaagaaaaaacacctg---aaaaaaaaaaagtagtattagtaatgataattaaacaatagaaaa |
45290201 |
T |
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| Q |
411 |
gcttaattaatccttatataattaaggcttaacttacgttatttcctttccaagcgcgataaattctgatgagcgaag |
488 |
Q |
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| T |
45290202 |
gcttaattaatccttatataattaaggcttaacttacgttatttcctttccaagcgcgataaattctgatgagcgaag |
45290279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 46191422 - 46191381
Alignment:
| Q |
16 |
atatgacacagacacatcgacaacaataataatttgagaaaa |
57 |
Q |
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| T |
46191422 |
atatgacacggacacatcgacaccaataataatttgagaaaa |
46191381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 36013873 - 36013811
Alignment:
| Q |
19 |
tgacacagacacatcgacaacaataataatttgagaaaaatgatataattgaacgaaatcaca |
81 |
Q |
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| T |
36013873 |
tgacactgacacattgacaatgataataatttgagaaaaatgacataattcaatgtaatcaca |
36013811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 12310799 - 12310837
Alignment:
| Q |
20 |
gacacagacacatcgacaacaataataatttgagaaaaa |
58 |
Q |
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| T |
12310799 |
gacacagacacatcgacatcgataataatttgagaaaaa |
12310837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 32850085 - 32850029
Alignment:
| Q |
33 |
cgacaacaataataatttgagaaaaatgatataattgaacgaaatcacatatgttgga |
90 |
Q |
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| T |
32850085 |
cgacaacagtaataatttgagaaaattg-tataattgaatataatcacatatgttgga |
32850029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 31514978 - 31515038
Alignment:
| Q |
26 |
gacacatcgacaacaataataatttgagaaaaatgatataattgaacgaaatcacatatgt |
86 |
Q |
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||||||| ||||||| |||||||||||||||| || || |||||| | |||||||||||| |
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| T |
31514978 |
gacacatagacaacactaataatttgagaaaatagagattattgaatgtaatcacatatgt |
31515038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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